add manifest to all nextfow pipelines

Clinical-Genomics · Sep 6, 2024 · 98dd755 · 98dd755
1 parent f429b92
commit 98dd755
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Showing 4 changed files with 24 additions and 2 deletions.
diff --git a/cg/resources/raredisease_bundle_filenames.yaml b/cg/resources/raredisease_bundle_filenames.yaml
@@ -1078,3 +1078,9 @@
   path_index: ~
   step: nextflow-config
   tag: nextflow-config
+- format: json
+  id: CASEID
+  path: PATHTOCASE/manifest.json
+  path_index: ~
+  step: manifest
+  tag: manifest
diff --git a/cg/resources/rnafusion_bundle_filenames.yaml b/cg/resources/rnafusion_bundle_filenames.yaml
@@ -135,3 +135,9 @@
   path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_insertSize.json
   step: multiqc
   tag: multiqc-picard-insert-size
+- format: json
+  id: CASEID
+  path: PATHTOCASE/manifest.json
+  path_index: ~
+  step: manifest
+  tag: manifest
diff --git a/cg/resources/taxprofiler_bundle_filenames.yaml b/cg/resources/taxprofiler_bundle_filenames.yaml
@@ -94,5 +94,9 @@
   path_index: ~
   step: multiqc-json
   tag: multiqc-kraken
-
-
+- format: json
+  id: CASEID
+  path: PATHTOCASE/manifest.json
+  path_index: ~
+  step: manifest
+  tag: manifest
diff --git a/cg/resources/tomte_bundle_filenames.yaml b/cg/resources/tomte_bundle_filenames.yaml
@@ -190,3 +190,9 @@
   path_index: ~
   step: multiqc
   tag: multiqc-picard-insert-size
+- format: json
+  id: CASEID
+  path: PATHTOCASE/manifest.json
+  path_index: ~
+  step: manifest
+  tag: manifest