add admin view of new tables (#3265)(minor)

## Description

Closes Clinical-Genomics/add-new-tech#22

Add table **Illumina Flow Cell** to StatusDB with the same columns as the **Flowcell** table and the same operations (search and sort).

cg/server/admin.py

@@ -33,6 +33,12 @@ def view_priority(unused1, unused2, model, unused3):
     return Markup("%s" % model.priority.name) if model else ""
 
 
+def view_flow_cell_internal_id(unused1, unused2, model, unused3):
+    """column formatter for priority"""
+    del unused1, unused2, unused3
+    return Markup("%s" % model.device.internal_id)
+
+
 def view_case_sample_link(unused1, unused2, model, unused3):
     """column formatter to open the case-sample view"""
 
@@ -441,6 +447,52 @@ class AnalysisView(BaseView):
     form_extra_fields = {"workflow": SelectEnumField(enum_class=Workflow)}
 
 
+class IlluminaFlowCellView(BaseView):
+    """Admin view for Model.IlluminaSequencingRun"""
+
+    column_list = (
+        "internal_id",
+        "sequencer_type",
+        "sequencer_name",
+        "data_availability",
+        "has_backup",
+        "total_reads",
+        "total_undetermined_reads",
+        "percent_undetermined_reads",
+        "percent_q30",
+        "mean_quality_score",
+        "total_yield",
+        "yield_q30",
+        "cycles",
+        "demultiplexing_software",
+        "demultiplexing_software_version",
+        "sequencing_started_at",
+        "sequencing_completed_at",
+        "demultiplexing_started_at",
+        "demultiplexing_completed_at",
+        "archived_at",
+    )
+    column_formatters = {
+        "internal_id": view_flow_cell_internal_id,
+    }
+
+    column_default_sort = ("sequencing_completed_at", True)
+    column_filters = ["sequencer_type", "sequencer_name", "data_availability"]
+    column_editable_list = ["data_availability"]
+    column_searchable_list = ["sequencer_type", "sequencer_name", "device.internal_id"]
+    column_sortable_list = [
+        "sequencer_type",
+        "sequencer_name",
+        "data_availability",
+        "has_backup",
+        "sequencing_started_at",
+        "sequencing_completed_at",
+        "demultiplexing_started_at",
+        "demultiplexing_completed_at",
+        "archived_at",
+    ]
+
+
 class OrganismView(BaseView):
     """Admin view for Model.Organism"""
 

cg/server/app.py

@@ -6,6 +6,7 @@
 from flask_dance.contrib.google import google, make_google_blueprint
 from sqlalchemy.orm import scoped_session
 
+from cg.server import admin, api, ext, invoices
 from cg.store.database import get_scoped_session_registry
 from cg.store.models import (
     Analysis,
@@ -19,6 +20,7 @@
     Collaboration,
     Customer,
     Flowcell,
+    IlluminaSequencingRun,
     Invoice,
     Order,
     Organism,
@@ -29,8 +31,6 @@
     User,
 )
 
-from . import admin, api, ext, invoices
-
 
 def create_app():
     """Generate a flask application."""
@@ -128,6 +128,9 @@ def _register_admin_views():
     ext.admin.add_view(admin.FlowcellView(Flowcell, ext.db.session))
     ext.admin.add_view(admin.AnalysisView(Analysis, ext.db.session))
     ext.admin.add_view(admin.InvoiceView(Invoice, ext.db.session))
+    ext.admin.add_view(
+        admin.IlluminaFlowCellView(IlluminaSequencingRun, ext.db.session, name="Illumina Flow Cell")
+    )
 
 
 def _register_teardowns(app: Flask):

cg/store/models.py

@@ -406,9 +406,7 @@ def to_dict(self):
 class Collaboration(Base):
     __tablename__ = "collaboration"
     id: Mapped[PrimaryKeyInt]
-    internal_id: Mapped[Str32] = mapped_column(
-        unique=True,
-    )
+    internal_id: Mapped[Str32] = mapped_column(unique=True)
     name: Mapped[Str128]
     customers: Mapped[list[Customer]] = orm.relationship(
         secondary="customer_collaboration", back_populates="collaborations"