Fix fixture

Clinical-Genomics · Jan 15, 2025 · 60441c3 · 60441c3
1 parent 29ca54f
commit 60441c3
Showing 1 changed file with 11 additions and 6 deletions.
diff --git a/tests/fixture_plugins/orders_fixtures/order_to_submit_fixtures.py b/tests/fixture_plugins/orders_fixtures/order_to_submit_fixtures.py
@@ -10,8 +10,13 @@
 from cg.models.orders.order import OrderIn
 from cg.services.order_validation_service.workflows.balsamic.models.order import BalsamicOrder
 from cg.services.order_validation_service.workflows.fastq.models.order import FastqOrder
+from cg.services.order_validation_service.workflows.microbial_fastq.models.order import (
+    MicrobialFastqOrder,
+)
+from cg.services.order_validation_service.workflows.microsalt.models.order import MicrosaltOrder
 from cg.services.order_validation_service.workflows.mip_dna.models.order import MipDnaOrder
 from cg.services.order_validation_service.workflows.mip_rna.models.order import MipRnaOrder
+from cg.services.order_validation_service.workflows.mutant.models.order import MutantOrder
 from cg.services.order_validation_service.workflows.pacbio_long_read.models.order import PacbioOrder
 
 
@@ -126,6 +131,7 @@ def all_orders_to_submit(
     fluffy_order_to_submit: dict,
     metagenome_order_to_submit: dict,
     microbial_order_to_submit: dict,
+    microbial_fastq_order_to_submit: dict,
     mip_dna_order_to_submit: dict,
     mip_rna_order_to_submit: dict,
     pacbio_order_to_submit: dict,
@@ -141,15 +147,14 @@ def all_orders_to_submit(
         OrderType.METAGENOME: OrderIn.parse_obj(
             metagenome_order_to_submit, project=OrderType.METAGENOME
         ),
-        # OrderType.MICROSALT: OrderIn.parse_obj(
-        #    microbial_order_to_submit, project=OrderType.MICROSALT
-        # ),
+        OrderType.MICROBIAL_FASTQ: MicrobialFastqOrder.model_validate(
+            microbial_fastq_order_to_submit
+        ),
+        OrderType.MICROSALT: MicrosaltOrder.model_validate(microbial_order_to_submit),
         OrderType.MIP_DNA: MipDnaOrder.model_validate(mip_dna_order_to_submit),
         OrderType.MIP_RNA: MipRnaOrder.model_validate(mip_rna_order_to_submit),
         OrderType.PACBIO_LONG_READ: PacbioOrder.model_validate(pacbio_order_to_submit),
         # OrderType.RML: OrderIn.parse_obj(rml_order_to_submit, project=OrderType.RML),
         # OrderType.RNAFUSION: RnaFusionOrder.model_validate(rnafusion_order_to_submit),
-        # OrderType.SARS_COV_2: OrderIn.parse_obj(
-        #    sarscov2_order_to_submit, project=OrderType.SARS_COV_2
-        # ),
+        OrderType.SARS_COV_2: MutantOrder.model_validate(sarscov2_order_to_submit),
     }