fix(change coltype illumina sequencing run) (#3277) (patch)

# Description

Change column type from float to biginteger

alembic/versions/2024_05_27_ec2db27c06e3_adjust_col_type.py

@@ -0,0 +1,35 @@
+"""adjust-col-type
+
+Revision ID: ec2db27c06e3
+Revises: 18e3b2aba252
+Create Date: 2024-05-27 08:47:58.856322
+
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision = "ec2db27c06e3"
+down_revision = "18e3b2aba252"
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    op.alter_column(
+        table_name="illumina_sequencing_run",
+        column_name="yield_q30",
+        type_=sa.types.BigInteger(),
+        existing_type=sa.types.Float(),
+    )
+
+
+def downgrade():
+    op.alter_column(
+        table_name="illumina_sequencing_run",
+        column_name="yield_q30",
+        type_=sa.types.Float(),
+        existing_type=sa.types.BigInteger(),
+    )

cg/store/models.py

@@ -1040,7 +1040,7 @@ class IlluminaSequencingRun(InstrumentRun):
     percent_q30: Mapped[Num_6_2 | None]
     mean_quality_score: Mapped[Num_6_2 | None]
     total_yield: Mapped[BigInt | None]
-    yield_q30: Mapped[Num_6_2 | None]
+    yield_q30: Mapped[BigInt | None]
     cycles: Mapped[int | None]
     demultiplexing_software: Mapped[Str32 | None]
     demultiplexing_software_version: Mapped[Str32 | None]