Extract analyses endpoints (#3546)

cg/server/api.py

@@ -1,29 +1,14 @@
 import logging
 from http import HTTPStatus
-from flask import Blueprint, abort, g, jsonify, request
+from flask import Blueprint, abort, g, jsonify
 
-from cg.server.ext import db
 from cg.server.endpoints.utils import before_request
-from cg.store.models import Analysis
 
 LOG = logging.getLogger(__name__)
 BLUEPRINT = Blueprint("api", __name__, url_prefix="/api/v1")
 BLUEPRINT.before_request(before_request)
 
 
-@BLUEPRINT.route("/analyses")
-def get_analyses():
-    """Return analyses."""
-    if request.args.get("status") == "delivery":
-        analyses: list[Analysis] = db.get_analyses_to_deliver_for_pipeline()
-    elif request.args.get("status") == "upload":
-        analyses: list[Analysis] = db.get_analyses_to_upload()
-    else:
-        analyses: list[Analysis] = db.get_analyses()
-    parsed_analysis: list[dict] = [analysis_obj.to_dict() for analysis_obj in analyses[:30]]
-    return jsonify(analyses=parsed_analysis, total=len(analyses))
-
-
 @BLUEPRINT.route("/me")
 def get_user_information():
     """Return information about current user."""

cg/server/app.py

@@ -8,6 +8,7 @@
 
 from cg.server import admin, api, ext, invoices
 from cg.server.app_config import app_config
+from cg.server.endpoints.analyses import ANALYSES_BLUEPRINT
 from cg.server.endpoints.flow_cells import FLOW_CELLS_BLUEPRINT
 from cg.server.endpoints.orders import ORDERS_BLUEPRINT
 from cg.server.endpoints.applications import APPLICATIONS_BLUEPRINT
@@ -98,6 +99,8 @@ def logged_in(blueprint, token):
     app.register_blueprint(SAMPLES_BLUEPRINT)
     app.register_blueprint(POOLS_BLUEPRINT)
     app.register_blueprint(FLOW_CELLS_BLUEPRINT)
+    app.register_blueprint(ANALYSES_BLUEPRINT)
+
     _register_admin_views()
 
     ext.csrf.exempt(api.BLUEPRINT)
@@ -107,6 +110,7 @@ def logged_in(blueprint, token):
     ext.csrf.exempt(ORDERS_BLUEPRINT)
     ext.csrf.exempt(POOLS_BLUEPRINT)
     ext.csrf.exempt(FLOW_CELLS_BLUEPRINT)
+    ext.csrf.exempt(ANALYSES_BLUEPRINT)
 
     @app.route("/")
     def index():

cg/server/endpoints/analyses.py

@@ -0,0 +1,21 @@
+from flask import Blueprint, jsonify, request
+
+from cg.server.ext import db
+from cg.server.endpoints.utils import before_request
+from cg.store.models import Analysis
+
+ANALYSES_BLUEPRINT = Blueprint("analyses", __name__, url_prefix="/api/v1")
+ANALYSES_BLUEPRINT.before_request(before_request)
+
+
+@ANALYSES_BLUEPRINT.route("/analyses")
+def get_analyses():
+    """Return analyses."""
+    if request.args.get("status") == "delivery":
+        analyses: list[Analysis] = db.get_analyses_to_deliver_for_pipeline()
+    elif request.args.get("status") == "upload":
+        analyses: list[Analysis] = db.get_analyses_to_upload()
+    else:
+        analyses: list[Analysis] = db.get_analyses()
+    parsed_analysis: list[dict] = [analysis_obj.to_dict() for analysis_obj in analyses[:30]]
+    return jsonify(analyses=parsed_analysis, total=len(analyses))