fix types of pacbio dto attributes

Clinical-Genomics · Jul 29, 2024 · 0103b45 · 0103b45
1 parent b9c23ea
commit 0103b45
Showing 1 changed file with 13 additions and 10 deletions.
diff --git a/cg/services/post_processing/pacbio/data_transfer_service/dto.py b/cg/services/post_processing/pacbio/data_transfer_service/dto.py
@@ -10,27 +10,29 @@ class PacBioSequencingRunDTO(BaseModel):
     type: DeviceType
     well: str
     plate: int
-    movie_time_hours: int
+    movie_time_hours: int | None
     hifi_reads: int
     hifi_yield: int
-    hifi_mean_read_length: int
+    hifi_mean_read_length: float
+    hifi_median_read_length: int
+    hifi_mean_length_n50: int
     hifi_median_read_quality: str
     percent_reads_passing_q30: float
     productive_zmws: int
     p0_percent: float
     p1_percent: float
     p2_percent: float
-    polymerase_mean_read_length: int
-    polymerase_read_length_n50: int
-    polymerase_mean_longest_subread: int
-    polymerase_longest_subread_n50: int
+    polymerase_mean_read_length: float
+    polymerase_read_length_n50: float
+    polymerase_mean_longest_subread: float
+    polymerase_longest_subread_n50: float
     control_reads: int
-    control_mean_read_length: int
+    control_mean_read_length: float
     control_mean_read_concordance: float
     control_mode_read_concordance: float
     failed_reads: int
     failed_yield: int
-    failed_mean_read_length: int
+    failed_mean_read_length: float
     movie_name: str
 
 
@@ -43,12 +45,13 @@ class PacBioSampleSequencingMetricsDTO(BaseModel):
     sample_internal_id: str
     hifi_reads: int
     hifi_yield: int
-    hifi_mean_read_length: int
+    hifi_mean_read_length: float
+    hifi_median_read_length: int
     hifi_median_read_quality: str
     percent_reads_passing_q30: float
     failed_reads: int
     failed_yield: int
-    failed_mean_read_length: int
+    failed_mean_read_length: float
 
 
 class PacBioDTOs(PostProcessingDTOs):