qf - prefer ceed/types.h over ceed.h in qf source

examples/ceed/ex1-volume.h

@@ -5,7 +5,7 @@
 //
 // This file is part of CEED:  http://github.com/ceed
 
-#include <ceed.h>
+#include <ceed/types.h>
 
 /// A structure used to pass additional data to f_build_mass
 struct BuildContext {

examples/ceed/ex2-surface.h

@@ -5,7 +5,7 @@
 //
 // This file is part of CEED:  http://github.com/ceed
 
-#include <ceed.h>
+#include <ceed/types.h>
 
 /// A structure used to pass additional data to f_build_diff
 struct BuildContext {

examples/deal.II/bps-qfunctions.h

@@ -15,7 +15,7 @@
 //
 // ---------------------------------------------------------------------
 
-#include <ceed.h>
+#include <ceed/types.h>
 
 
 

examples/fluids/qfunctions/advection.h

@@ -7,8 +7,10 @@
 
 /// @file
 /// Advection initial condition and operator for Navier-Stokes example using PETSc
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 #include "advection_types.h"
 #include "newtonian_state.h"

examples/fluids/qfunctions/advection_types.h

@@ -6,7 +6,7 @@
 // This file is part of CEED:  http://github.com/ceed
 #pragma once
 
-#include <ceed.h>
+#include <ceed/types.h>
 #include "stabilization_types.h"
 
 typedef enum {

examples/fluids/qfunctions/blasius.h

@@ -7,7 +7,7 @@
 
 /// @file
 /// Operator for Navier-Stokes example using PETSc
-#include <ceed.h>
+#include <ceed/types.h>
 
 #include "newtonian_state.h"
 #include "newtonian_types.h"

examples/fluids/qfunctions/channel.h

@@ -7,8 +7,10 @@
 
 /// @file
 /// Operator for Navier-Stokes example using PETSc
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 #include "newtonian_state.h"
 #include "newtonian_types.h"

examples/fluids/qfunctions/densitycurrent.h

@@ -11,8 +11,10 @@
 // Model from:
 //   Semi-Implicit Formulations of the Navier-Stokes Equations: Application to
 //   Nonhydrostatic Atmospheric Modeling, Giraldo, Restelli, and Lauter (2010).
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 #include "newtonian_state.h"
 #include "newtonian_types.h"

examples/fluids/qfunctions/differential_filter.h

@@ -7,7 +7,7 @@
 //
 /// @file
 /// Implementation of differential filtering
-#include <ceed.h>
+#include <ceed/types.h>
 
 #include "differential_filter_enums.h"
 #include "newtonian_state.h"

examples/fluids/qfunctions/eulervortex.h

@@ -11,8 +11,10 @@
 
 // Model from:
 //   On the Order of Accuracy and Numerical Performance of Two Classes of Finite Volume WENO Schemes, Zhang, Zhang, and Shu (2011).
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 #include "utils.h"
 

examples/fluids/qfunctions/gaussianwave.h

@@ -7,8 +7,10 @@
 
 /// @file
 /// Thermodynamic wave propogation for testing freestream/non-reflecting boundary conditions. Proposed in Mengaldo et. al. 2014
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 #include "newtonian_state.h"
 #include "utils.h"

examples/fluids/qfunctions/grid_anisotropy_tensor.h

@@ -8,7 +8,7 @@
 /// @file
 /// Element anisotropy tensor, as defined in 'Invariant data-driven subgrid stress modeling in the strain-rate eigenframe for large eddy simulation'
 /// Prakash et al. 2022
-#include <ceed.h>
+#include <ceed/types.h>
 
 #include "utils.h"
 #include "utils_eigensolver_jacobi.h"

examples/fluids/qfunctions/inverse_multiplicity.h

@@ -4,7 +4,7 @@
 // SPDX-License-Identifier: BSD-2-Clause
 //
 // This file is part of CEED:  http://github.com/ceed
-#include <ceed.h>
+#include <ceed/types.h>
 
 // @brief Calculate the inverse of the multiplicity, reducing to a single component
 CEED_QFUNCTION(InverseMultiplicity)(void *ctx, CeedInt Q, const CeedScalar *const *in, CeedScalar *const *out) {

examples/fluids/qfunctions/mass.h

@@ -7,8 +7,10 @@
 
 /// @file
 /// Mass operator for Navier-Stokes example using PETSc
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 // *****************************************************************************
 // This QFunction applies the mass matrix to five interlaced fields.

examples/fluids/qfunctions/newtonian.h

@@ -7,9 +7,11 @@
 
 /// @file
 /// Operator for Navier-Stokes example using PETSc
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
 #include <stdlib.h>
+#endif
 
 #include "newtonian_state.h"
 #include "newtonian_types.h"

examples/fluids/qfunctions/newtonian_state.h

@@ -9,8 +9,11 @@
 /// Structs and helper functions regarding the state of a newtonian simulation
 #pragma once
 
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#include <stdbool.h>
+#endif
 
 #include "newtonian_types.h"
 #include "utils.h"

examples/fluids/qfunctions/newtonian_types.h

@@ -6,7 +6,10 @@
 // This file is part of CEED:  http://github.com/ceed
 #pragma once
 
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
+#include <stdbool.h>
+#endif
 
 #include "stabilization_types.h"
 

examples/fluids/qfunctions/setupgeo.h

@@ -7,8 +7,10 @@
 
 /// @file
 /// Geometric factors (3D) for Navier-Stokes example using PETSc
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 #include "setupgeo_helpers.h"
 #include "utils.h"

examples/fluids/qfunctions/setupgeo2d.h

@@ -7,7 +7,7 @@
 
 /// @file
 /// Geometric factors (2D) for Navier-Stokes example using PETSc
-#include <ceed.h>
+#include <ceed/types.h>
 #include "setupgeo_helpers.h"
 #include "utils.h"
 

examples/fluids/qfunctions/setupgeo_helpers.h

@@ -9,8 +9,10 @@
 /// Geometric factors (3D) for Navier-Stokes example using PETSc
 #pragma once
 
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 #include "utils.h"
 

examples/fluids/qfunctions/shocktube.h

@@ -10,8 +10,10 @@
 
 // Model from:
 //   On the Order of Accuracy and Numerical Performance of Two Classes of Finite Volume WENO Schemes, Zhang, Zhang, and Shu (2011).
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 #include "utils.h"
 

examples/fluids/qfunctions/stabilization.h

@@ -7,7 +7,7 @@
 
 /// @file
 /// Helper functions for computing stabilization terms of a newtonian simulation
-#include <ceed.h>
+#include <ceed/types.h>
 
 #include "newtonian_state.h"
 

examples/fluids/qfunctions/stg_shur14.h

@@ -12,9 +12,11 @@
 /// SetupSTG_Rand reads in the input files and fills in STGShur14Context.
 /// Then STGShur14_CalcQF is run over quadrature points.
 /// Before the program exits, TearDownSTG is run to free the memory of the allocated arrays.
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
 #include <stdlib.h>
+#endif
 
 #include "newtonian_state.h"
 #include "setupgeo_helpers.h"

examples/fluids/qfunctions/stg_shur14_type.h

@@ -6,7 +6,7 @@
 // This file is part of CEED:  http://github.com/ceed
 #pragma once
 
-#include <ceed.h>
+#include <ceed/types.h>
 
 #include "newtonian_types.h"
 

examples/fluids/qfunctions/strong_boundary_conditions.h

@@ -4,7 +4,7 @@
 // SPDX-License-Identifier: BSD-2-Clause
 //
 // This file is part of CEED:  http://github.com/ceed
-#include <ceed.h>
+#include <ceed/types.h>
 
 #include "setupgeo_helpers.h"
 

examples/fluids/qfunctions/taylorgreen.h

@@ -4,8 +4,10 @@
 // SPDX-License-Identifier: BSD-2-Clause
 //
 // This file is part of CEED:  http://github.com/ceed
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 #include "newtonian_state.h"
 #include "newtonian_types.h"

examples/fluids/qfunctions/turb_spanstats.h

@@ -4,7 +4,10 @@
 // SPDX-License-Identifier: BSD-2-Clause
 //
 // This file is part of CEED:  http://github.com/ceed
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
+#include <stdbool.h>
+#endif
 
 #include "newtonian_state.h"
 #include "turb_stats_types.h"

examples/fluids/qfunctions/utils.h

@@ -6,8 +6,10 @@
 // This file is part of CEED:  http://github.com/ceed
 #pragma once
 
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 #ifndef M_PI
 #define M_PI 3.14159265358979323846

examples/fluids/qfunctions/utils_eigensolver_jacobi.h

@@ -9,8 +9,10 @@
 /// Eigen system solver for symmetric NxN matrices. Modified from the CC0 code provided at https://github.com/jewettaij/jacobi_pd
 #pragma once
 
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 #include "utils.h"
 

examples/fluids/qfunctions/velocity_gradient_projection.h

@@ -4,7 +4,7 @@
 // SPDX-License-Identifier: BSD-2-Clause
 //
 // This file is part of CEED:  http://github.com/ceed
-#include <ceed.h>
+#include <ceed/types.h>
 
 #include "newtonian_state.h"
 #include "newtonian_types.h"

examples/mfem/bp1.h

@@ -5,7 +5,7 @@
 //
 // This file is part of CEED:  http://github.com/ceed
 
-#include <ceed.h>
+#include <ceed/types.h>
 
 /// A structure used to pass additional data to f_build_mass
 struct BuildContext {

examples/mfem/bp3.h

@@ -5,7 +5,7 @@
 //
 // This file is part of CEED:  http://github.com/ceed
 
-#include <ceed.h>
+#include <ceed/types.h>
 
 /// A structure used to pass additional data to f_build_diff and f_apply_diff
 struct BuildContext {

examples/petsc/qfunctions/area/areacube.h

@@ -8,8 +8,10 @@
 /// @file
 /// libCEED QFunctions for mass operator example for a scalar field on the sphere using PETSc
 
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 // -----------------------------------------------------------------------------
 // This QFunction sets up the geometric factor required for integration when reference coordinates have a different dimension than the one of physical

examples/petsc/qfunctions/area/areasphere.h

@@ -8,8 +8,10 @@
 /// @file
 /// libCEED QFunctions for mass operator example for a scalar field on the sphere using PETSc
 
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 // -----------------------------------------------------------------------------
 // This QFunction sets up the geometric factor required for integration when reference coordinates have a different dimension than the one of physical

examples/petsc/qfunctions/bps/bp1.h

@@ -8,8 +8,10 @@
 /// @file
 /// libCEED QFunctions for mass operator example using PETSc
 
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 // -----------------------------------------------------------------------------
 // This QFunction sets up the geometric factors required to apply the mass operator

examples/petsc/qfunctions/bps/bp1sphere.h

@@ -8,8 +8,10 @@
 /// @file
 /// libCEED QFunctions for mass operator example for a scalar field on the sphere using PETSc
 
-#include <ceed.h>
+#include <ceed/types.h>
+#ifndef CEED_RUNNING_JIT_PASS
 #include <math.h>
+#endif
 
 // -----------------------------------------------------------------------------
 // This QFunction sets up the geometric factors required for integration and coordinate transformations when reference coordinates have a different