3.7.2

What's Changed

• [Release 3.7.2]: make sure sdist is also published by @heerener in #229

Full Changelog: 3.7.1...3.7.2

3.7.1

What's Changed

• [Release 3.7.1]: fix publishing to PyPI by using trusted publisher by @WeinaJi in #228

Full Changelog: 3.7.0...3.7.1

3.7.0

What's Changed

• Have a pre-stdinit hook, to be used by replace_axon by @ferdonline in #189
• Fix the Python 3.12 version inconsistency in GitHub actions cache by @WeinaJi in #194
• Switch astrocyte mod file from mcd to cadifus. by @WeinaJi in #193
• Crash test mode by @ferdonline in #190
• Pin Python versions by @ferdonline in #196
• Crash-test mode: Speed up synapse loading by @ferdonline in #191
• Synapse reading fixes by @ferdonline in #197
• Fix ReadtheDocs PR build failure by @WeinaJi in #199
• Fix multiple issues with Memory Load Balance for MMB run by @st4rl3ss in #185
• BBPBGLIB-1042 Don't return early from target_gids, enable intersection by @ferdonline in #198
• Migrate unit tests to GitHub by @WeinaJi in #175
• [REP-91] Avoid raising exception when point process is missing in a section by @jorblancoa in #202
• CoreNeuron Rebalancer by @ferdonline in #206
• ConnManager : Small readability improvements by @ferdonline in #200
• [BBPBGLIB-1059] Integrate Oren's gap junction compensation procedure into neurodamus by @WeinaJi in #195
• Fix: Avoid extraneous newline by @ferdonline in #212
• [BBPBGLIB-1184] Fix CoreNEURON reports restore functionality by @jorblancoa in #210
• Update docs for memory rebalance by @st4rl3ss in #211
• Rebalance tool: Fix record count. Enable using all files.dat entries by @ferdonline in #213
• Replace unmaintained docopt with docopt-ng by @matz-e in #215
• Fix issue #201: improve README by @WeinaJi in #216
• Fix Save/Restore coreneuron_input issue: create symlink to the save coreneuron_input folder by @WeinaJi in #214
• Replace the Sonata image with the recent neurodamus img by @ferdonline in #217
• Implement CLI --version by @ferdonline in #218
• Improve docs: for installation add link to neurodamus-models, others link to Wiki by @WeinaJi in #219
• Update DOI badge by @WeinaJi in #220
• Updated change log for 3.7.0 by @ferdonline in #209

Full Changelog: 3.6.0...3.7.0

3.6.0

What's Changed

• Read modifications list from libsonata API by @WeinaJi in #181
• [BBPBGLIB-975] Improved "signal" shot noise parameterization by @seirios in #187
• ChangeLog 3.6.0 by @jorblancoa in #188

New Contributors

• @seirios made their first contribution in #187

Full Changelog: 3.5.0...3.6.0

3.5.0

What's Changed

• Replay with NetCons in CoreNEURON as in NEURON by @WeinaJi in #173
• [BBPBGLIB-1167] Automatic balance loading and on-the-fly rebalance by @st4rl3ss in #178
• [BBPBGLIB-1175] Handle deleted sections correctly by @WeinaJi in #182
• Update ngv test to use V10 emodels by @WeinaJi in #183
• [BBPBGLIB-854] Implement a CLI option to run coreneuron in direct mode without writing model data to disk by @WeinaJi in #100
• Allow API configuration to preserve the axons during setup by @ferdonline in #155
• Change log 3.5.0 by @WeinaJi in #184

Full Changelog: 3.4.0...3.5.0

3.4.0

What's Changed

• [BBPBGLIB-1141] Remove HDF5reader.mod which is already replaced by libsonata by @WeinaJi in #162
• Optimize Dockerfile a bit by @matz-e in #176
• [BBPBGLIB-1152] Multi-cycle support for dry run estimate and instantiation by @st4rl3ss in #171
• Accurate synapse counts in dry-run (respect src target) by @ferdonline in #169
• Remove VecStim to use the version in neurodamus-models by @WeinaJi in #177
• Change log 3.4.0 by @WeinaJi in #179

Full Changelog: 3.3.0...3.4.0

3.3.0

What's Changed

• [BBPBGLIB-1137] Account for nonzero total current when using SEClamp; allow nonzero total current when simulating physical electrodes by @joseph-tharayil in #134
• Fix record_spikes for load balancing by @WeinaJi in #167
• Cache dependent packages in GH actions workflow by @WeinaJi in #166
• Add tests for python 3.9 to 3.12 by @jorblancoa in #124
• Avoid calling cleanup from destructor by @ferdonline in #168
• Trigger workflow when pushing to main by @WeinaJi in #172
• Tests with subprocess should capture streams by @ferdonline in #164
• [BBPBGLIB-1158] Add empirical mechanism to estimate simulation memory usage by @st4rl3ss in #165
• [BBPBGLIB-1122] Removing legacy RNGs, leaving only Random123 by @atemerev in #136
• [BBPBGLIB-739] Override UTF-8 for logging by @atemerev in #147
• ChangeLog 3.3.0 by @WeinaJi in #174

Full Changelog: 3.2.1...3.3.0

3.2.1

What's Changed

• Remove Report.hoc reference by @jorblancoa in #158
• [BBPBGLIB-1153] Allow disabling reports from SONATA config by @kbvw in #159
• Fix dead link from CONTRIBUTING.md to README.rst by @kbvw in #160
• [BBPBGLIB-1154] Add information about CORENEURONLIB in the Docker README by @WeinaJi in #161
• ChangeLog 3.2.1 by @WeinaJi in #163

New Contributors

• @kbvw made their first contribution in #159

Full Changelog: 3.2.0...3.2.1

3.2.0

What's Changed

• [BBPBGLIB-1139] Missing exception logging on configuration errors by @atemerev in #142
• Clean up wheel contents. by @matz-e in #144
• Hotfix to solve crashes when running on certain amount of ranks by @st4rl3ss in #141
• [BBPGBLIB-1147] Fixes crashes with KeyError when running sonataconf-sscx-O1 circuit on dry run by @st4rl3ss in #149
• Replay with SONATA spikes files by @WeinaJi in #150
• Update docker file with the new data location by @WeinaJi in #153
• Update online-lfp.rst by @joseph-tharayil in #152
• [BBPBGLIB-1145] Write gids without offset in WholeCell LB complexity file by @jorblancoa in #148
• [BBPGLIB-1148] Add support for gap junctions in dry run by @st4rl3ss in #151
• [BBPBGLIB-1057] Replace Report.hoc by report.py by @jorblancoa in #145
• ChangeLog 3.2.0 by @WeinaJi in #154

New Contributors

• @joseph-tharayil made their first contribution in #152

Full Changelog: 3.1.1...3.2.0

3.1.1

What's Changed

• Fix fetching error in GH workflow triggered by tag and ChangeLog for 3.1.1 by @WeinaJi in #139

Full Changelog: 3.1.0...3.1.1