load graph using nexus #92
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| name: Test the contribution | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| env: | |
| apt_options: -o Acquire::Retries=3 | |
| PETSC_DIR: /usr/lib/petscdir/petsc3.15/x86_64-linux-gnu-real | |
| PETSC_VERSION: "3.15.1" | |
| PYTHON_VERSION: "3.11" | |
| jobs: | |
| test: | |
| name: Build and test the contribution | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Set up Python | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ env.PYTHON_VERSION }} | |
| - name: Setup MPI | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: openmpi | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Install system packages for MPI and PETSc | |
| run: | | |
| sudo apt-get ${{ env.apt_options }} update -y | |
| sudo apt-get ${{ env.apt_options }} install libopenmpi-dev libpetsc-real3.15-dev | |
| - name: Install petsc4py and other test dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools | |
| python -m pip install tox-gh-actions | |
| - name: Cache petsc4py build | |
| id: cache-petsc4py | |
| uses: actions/cache@v3 | |
| env: | |
| cache-name: cache-petsc4py | |
| with: | |
| path: venv | |
| key: ${{ runner.os }}-build-${{ env.cache-name}}-${{ env.PETSC_VERSION }}-py${{ env.PYTHON_VERSION }} | |
| # FIXME Once PETSc is updated to a more reasonable version, one should attempt to | |
| # build a wheel instead of installing into a virtual environment. This wheel can then | |
| # be referred to directly in Tox, and we can avoid passing PYTHONPATH around. | |
| - name: Build petsc4py | |
| if: steps.cache-petsc4py.outputs.cache-hit != 'true' | |
| run: | | |
| python -m venv venv | |
| . ./venv/bin/activate | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install "cython<3" numpy | |
| git clone --branch "v${{ env.PETSC_VERSION }}" --depth 1 https://gitlab.com/petsc/petsc.git | |
| cd petsc/src/binding/petsc4py | |
| python -m pip install . | |
| - name: Run tox | |
| run: | | |
| tox -e py${{ env.PYTHON_VERSION }} | |
| env: | |
| PYTHONPATH: ${{ github.workspace }}/venv/lib/python${{ env.PYTHON_VERSION }}/site-packages |