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Release v1.0
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LukasBreitwieser committed Apr 8, 2021
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2 changes: 1 addition & 1 deletion CMakeLists.txt
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# Project name and current version. We do not specify any language for
# this project. Therefore, we will be able to check manually which compiler
# is detected on the system.
project(BioDynaMo LANGUAGES VERSION "0.1.0")
project(BioDynaMo LANGUAGES VERSION "1.0.0")

#---Set the locale to default C to prevent issued due to localization of commands---------------
# This is necessary as we for example call `clang -v` and parse its output. But on a localized
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22 changes: 22 additions & 0 deletions doc/blog/release_v1.0.md
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---
title: "BioDynaMo Version 1.0 Released"
date: "2021-04-09"
path: "/blog/release_v1.0/"
meta_description: ""
---

</br>

On behalf of the BioDynaMo team I am pleased to announce our first major release: BioDynaMo 1.0.

The following publication gives a good overview about BioDynaMo's features and capabilities.

**BioDynaMo: a general platform for scalable agent-based simulation** </br>
*Lukas Breitwieser, Ahmad Hesam, Jean de Montigny, Vasileios Vavourakis, Alexandros Iosif, Jack Jennings, Marcus Kaiser, Marco Manca, Alberto Di Meglio, Zaid Al-Ars, Fons Rademakers, Onur Mutlu, Roman Bauer* </br>
bioRxiv 2020.06.08.139949; doi: https://doi.org/10.1101/2020.06.08.139949

Please have a look at the [release notes](/docs/userguide/release_notes_v1.0/), [installation instructions](/docs/userguide/installation/) and [tutorials](/docs/userguide/hello_world/) for further information.

Thanks and enjoy! </br>
Lukas for the BioDynaMo team

4 changes: 4 additions & 0 deletions doc/sidebars/userguide.yaml
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items:
- title: OpenGL
link: /docs/userguide/opengl_issues/
- group: Release Notes
items:
- title: BioDynaMo v1.0
link: /docs/userguide/release_notes_v1.0/
- group: Changelog
items:
- title: Log
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79 changes: 79 additions & 0 deletions doc/user_guide/release_notes_v1.0.md
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---
title: "BioDynaMo Version 1.0 Release Notes"
date: "2020-04-09"
path: "/docs/userguide/release_notes_v1.0/"
toc: true
image: ""
sidebar: "userguide"
keywords:
-release
-v1.0
-1.0
---

BioDynaMo version 1.0 was released on April 9, 2021.

The following people have contributed to this first major version
(ordered by number of contributions):

* Lukas Breitwieser
* Ahmad Hesam
* Fons Rademakers
* Konstantinos Kanellis
* Jean de Montigny
* Roman Bauer
* Giovanni De Toni
* Jack Jennings
* Dorukhan Arslan
* Nam Nguyen
* Johannes Franz
* Lukasz Stempniewicz
* Robert Harakaly
* Sadyksaj
* Tobias Duswald
* Victor Drobny

## Main features

* A general API to implement and customize agent-based models
* A fully parallelized, high-performance simulation engine
* Ability to offload computations to GPUs of all major vendors
* Large-scale model support. BioDynaMo can simulate billions of agents on a single server.
* Predefined building blocks for simulations in neuroscience, oncology, and epidemiology
* Support for spherical and cylindrical agent geometries
* Diffusion methods: Euler, Runge-Kutta
* Multi-scale simulation support
* Visualization in ParaView
* Parameter configuration: JSON, C++ interpreter script, command line, or in-code
* Automatic backup and restore functionality using ROOT
* BioDynaMo Notebooks for rapid web-based prototyping


For a more detailed description of BioDynaMo's features and capabilities,
please have a look at the following publication:

**BioDynaMo: a general platform for scalable agent-based simulation** </br>
*Lukas Breitwieser, Ahmad Hesam, Jean de Montigny, Vasileios Vavourakis, Alexandros Iosif, Jack Jennings, Marcus Kaiser, Marco Manca, Alberto Di Meglio, Zaid Al-Ars, Fons Rademakers, Onur Mutlu, Roman Bauer* </br>
bioRxiv 2020.06.08.139949; doi: https://doi.org/10.1101/2020.06.08.139949


## Demos

BioDynaMo v1.0 comes with the following demos:

* Cell division
* Diffusion
* Soma clustering
* Tumor concept
* Epidemiology
* Gene regulation
* Parameters
* Multiple simulations
* Makefile project

## Supported Platforms

* Ubuntu 18.04, 20.04
* CentOS 7
* macOS 10.15 and macOS 11.1

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