python API for WCP

Setup and tests on uboonegpvm

utility shell functions

path-remove ()
{
    local IFS=':';
    local NEWPATH;
    local DIR;
    local PATHVARIABLE=${2:-PATH};
    for DIR in ${!PATHVARIABLE};
    do  
        if [ "$DIR" != "$1" ]; then
            NEWPATH=${NEWPATH:+$NEWPATH:}$DIR;
        fi;
    done;
    export $PATHVARIABLE="$NEWPATH"
}

path-prepend ()
{
    path-remove "$1" "$2";
    local PATHVARIABLE="${2:-PATH}";
    export $PATHVARIABLE="$1${!PATHVARIABLE:+:${!PATHVARIABLE}}"
}

path-append ()
{
    path-remove "$1" "$2";
    local PATHVARIABLE="${2:-PATH}";
    export $PATHVARIABLE="${!PATHVARIABLE:+${!PATHVARIABLE}:}$1"
}

setup ups enviroments on uboonegpvm

source /cvmfs/uboone.opensciencegrid.org/products/setup_uboone.sh
setup uboonecode v08_00_00_42 -q e17:prof

setup numpy v1_14_3 -q e17:openblas:p2714b:prof
setup libtorch v1_0_1 -q e17:prof
setup SparseConvNet 8422a6f -q e17:prof

clone the WCP repo

git clone [email protected]:BNLIF/wire-cell.git
cd wire-cell
git submodule init
git submodule update

compile WCP

Configure (change prefix as needed)

env CC=gcc CXX=g++ FC=gfortran ./waf-tools/waf configure \
    --with-root="$ROOTSYS" \
    --boost-includes="$BOOST_INC" \
    --boost-libs="$BOOST_LIB" \
    --boost-mt \
    --with-fftw="$FFTW_FQ_DIR" \
    --with-fftw-include="$FFTW_INC" \
    --with-fftw-lib="$FFTW_LIBRARY" \
    --with-eigen="$EIGEN_DIR" \
    --with-glpk="$GLPK_FQ_DIR/" --with-glpk-include="$GLPK_INC" --with-glpk-lib="$GLPK_LIB" \
    --with-python="$PYTHON_ROOT/" --with-python-include="$PYTHON_INCLUDE" --with-python-lib="$PYTHON_LIB" \
    --prefix="/uboone/app/users/$USER/products/wire-cell/"

Build and install:

./waf-tools/waf -p install

envs for local build test

# use local build of WCP
# change WCP_FQ_DIR as needed
WCP_FQ_DIR=/uboone/app/users/$USER/products/wire-cell/
path-prepend $WCP_FQ_DIR/lib/ LD_LIBRARY_PATH
path-prepend $WCP_FQ_DIR/lib64/ LD_LIBRARY_PATH
path-prepend $WCP_FQ_DIR/bin/ PATH

path-prepend $WCP_FQ_DIR/python PYTHONPATH

test python, C++ enviroment and communication

./build/pyutil/test_call_func test_funcs multiply 2 3

inputs for tests using wire-cell-prod-nue

link