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Upgrade cvode#286

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spco wants to merge 10 commits intoAtChem:masterAtChem/AtChem2:masterfrom spco:upgrade_cvodespco/AtChem2:upgrade_cvodeCopy head branch name to clipboard

+5,930-5,920

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Commits on Aug 22, 2018

• First attempt at upgrade. Largely works, with small-ish errors, but needs more exploration (and only solverType==2 is tested in the testsuite).

  

  Sam Cox

  committed
  0f5a498

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• Correct lapack/blas locations in cvode install.

  

  Sam Cox

  committed
  50833c2

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• Temporarily change cvode location.

  

  Sam Cox

  committed
  b5151d7

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• Add missing SUNMATRIX module initialization in the DENSE solver case (solverType==3).

  

  Sam Cox

  committed
  8869c1f

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• Move to cvode 3.1.2 and fix FORT_LIB.

  

  Sam Cox

  committed
  56b04ee

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• Fix style in atchem.f90.

  

  Sam Cox

  committed
  c5da7cd

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• Fix style in outputFunctions.f90 (whitespace).

  

  Sam Cox

  committed
  96603ef

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• Explore cvode 3 directory.

  

  Sam Cox

  committed
  f53e49b

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• Remove ls, and fix DYLD_LIBRARY_PATH for new cvode install.

  

  Sam Cox

  committed
  f198757

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Commits on Aug 23, 2018

• Add changes to output files. None seem to be major, based on looking at the output of the plotting tools.

  

  Sam Cox

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  b24f468

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