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added stockholm key; fixed width fasta; updated warning for calc button #3

added stockholm key; fixed width fasta; updated warning for calc button

added stockholm key; fixed width fasta; updated warning for calc button #3

Workflow file for this run

on:
push:
branches: [main, master]
pull_request:
branches: [main, master]
name: ci-cd
jobs:
test:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.python }})
strategy:
fail-fast: false
matrix:
config:
- {os: "ubuntu-20.04", python: "3.9.17"}
env:
APP: bridge-rna-designer
PORT: 8080
steps:
- id: "Checkout"
name: "Checkout code"
uses: actions/checkout@v3
- id: "Python"
name: "Set up Python"
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.config.python }}
- id: "Python-deps"
name: "Install app dependencies"
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
- id: "pytest-install"
name: "Install pytest"
run: |
pip install pytest
- id: "pytest-run"
name: "Run pytest"
shell: bash -l {0}
run: |
pytest -s tests
- id: "Google-Auth"
name: "Authenticate to Google Cloud"
uses: "google-github-actions/auth@v1"
with:
credentials_json: "${{ secrets.GOOGLE_CREDENTIALS }}"
- id: "gcloud-setup"
name: "Set up GCP Cloud SDK"
uses: google-github-actions/setup-gcloud@v1
with:
project_id: "${{ secrets.GCP_PROJECT_ID }}"
- id: "Docker-Auth"
name: "Docker authentication"
run: |
gcloud auth configure-docker us-west1-docker.pkg.dev --project ${{ secrets.GCP_PROJECT_ID }}
- id: "Docker-Build"
name: "Build and push container"
run: |
docker build -t "us-west1-docker.pkg.dev/${{ secrets.GCP_PROJECT_ID }}/${{ env.APP }}/${{ env.APP }}:${{ github.sha }}" . \
&& docker push "us-west1-docker.pkg.dev/${{ secrets.GCP_PROJECT_ID }}/${{ env.APP }}/${{ env.APP }}:${{ github.sha }}"
- id: "Deploy"
name: "Deploy to Cloud Run"
uses: google-github-actions/deploy-cloudrun@v1
with:
service: "${{ env.APP }}"
image: "us-west1-docker.pkg.dev/${{ secrets.GCP_PROJECT_ID }}/${{ env.APP }}/${{ env.APP }}:${{ github.sha }}"
region: "us-west1"
flags: >
--service-account=${{ secrets.GCP_SERVICE_ACCOUNT }}
--port=${{ env.PORT }}
--cpu=2
--memory=2Gi
--max-instances=1
--concurrency=80