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improve core functionalities for CLI #53

Merged
merged 35 commits into from
May 7, 2024
Merged

improve core functionalities for CLI #53

merged 35 commits into from
May 7, 2024

Commits on Apr 26, 2024

  1. Merge branch 'master' into cli

    @abearab
    abearab committed Apr 26, 2024
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Commits on May 1, 2024

  1. Merge branch 'master' into cli

    @abearab
    abearab committed May 1, 2024
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  2. refactor fq2cnt to counter

    @abearab
    abearab committed May 1, 2024
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Commits on May 2, 2024

  1. remove ,

    @abearab
    abearab committed May 2, 2024
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  2. add map_to_library_single_guide function

    @abearab
    abearab committed May 2, 2024
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  3. add load_cas9_sgRNA_library function

    @abearab
    abearab committed May 2, 2024
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  4. update Counter module

    @abearab
    abearab committed May 2, 2024
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  5. convert library to polars

    @abearab
    abearab committed May 2, 2024
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  6. no index

    @abearab
    abearab committed May 2, 2024
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  7. fix copy 

    https://stackoverflow.com/questions/76077950/how-do-you-copy-a-dataframe-in-polars
    @abearab
    abearab committed May 2, 2024
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  8. add verbose

    @abearab
    abearab committed May 2, 2024
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  9. fix a missing variable

    @abearab
    abearab committed May 2, 2024
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  10. trim first

    @abearab
    abearab committed May 2, 2024
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  11. rename recomb to recombinant

    @abearab
    abearab committed May 2, 2024
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  12. support recombinants

    @abearab
    abearab committed May 2, 2024
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  13. fix index

    @abearab
    abearab committed May 2, 2024
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Commits on May 3, 2024

  1. fix get_recombinant input

    @abearab
    abearab committed May 3, 2024
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  2. fix column names

    @abearab
    abearab committed May 3, 2024
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  3. fix rename for polars

    @abearab
    abearab committed May 3, 2024
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Commits on May 5, 2024

  1. add index_col as input arg

    @abearab
    abearab committed May 5, 2024
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  2. add index_col as input arg

    @abearab
    abearab committed May 5, 2024
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  3. mend

    @abearab
    abearab committed May 5, 2024
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Commits on May 6, 2024

  1. try parallel on samples

    @abearab
    abearab committed May 6, 2024
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  2. mend

    @abearab
    abearab committed May 6, 2024
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  3. use multiprocessing

    @abearab
    abearab committed May 6, 2024
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  4. typo

    @abearab
    abearab committed May 6, 2024
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  5. use multiprocessing

    @abearab
    abearab committed May 6, 2024
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  6. use multiprocessing

    @abearab
    abearab committed May 6, 2024
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  7. add todo line

    @abearab
    abearab committed May 6, 2024
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  8. use multiprocess

    @abearab
    abearab committed May 6, 2024
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  9. add NotImplementedError for parallel option

    @abearab
    abearab committed May 6, 2024
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  10. mend

    @abearab
    abearab committed May 6, 2024
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Commits on May 7, 2024

  1. allow unmapped return

    @abearab
    abearab committed May 7, 2024
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  2. improve Counter class

    @abearab
    abearab committed May 7, 2024
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  3. new file for counter module

    @abearab
    abearab committed May 7, 2024
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