Should pass tests, may occassionally hang on functionality, but w/e, LFG #30

	# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: treespace-test

	on:
	push:

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.9", "3.10", "3.11"]

	steps:
	- name: Checkout project sources
	uses: actions/checkout@v4

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	bash install.sh
	python -m pip install --upgrade pip
	python -m pip install flake8 pytest coverage
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi

	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics

	- name: Compile the Random Phylogenetic network generator
	run: \|
	cd phylo_generator
	make
	cd ..

	- name: Test with pytest and obtain code coverage
	run: \|
	coverage run -m pytest test

	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v4
	with:
	token: ${{ secrets.CODECOV_TOKEN }}

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