GitHub - Ananth-Prakash/Rice_RNA_Ribosnitch: SNPs leading to RNA secondary structure changes in Rice

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SNPs leading to RNA secondary structure changes in Rice

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Name		Name	Last commit message	Last commit date
Latest commit History 50 Commits
9311_NewReference		9311_NewReference
Fold		Fold
SNP_calling		SNP_calling
Batch_compute_stop_counts_multimapping.sh		Batch_compute_stop_counts_multimapping.sh
Compute_stop_countsM.py		Compute_stop_countsM.py
Genomic_mapping_9311_HISAT2.sh		Genomic_mapping_9311_HISAT2.sh
Pipeline_README.txt		Pipeline_README.txt
Rescale_reactivity_Winsorize.pl		Rescale_reactivity_Winsorize.pl
SLURM_get_SNPconservation_3Kgenomes.sh		SLURM_get_SNPconservation_3Kgenomes.sh
SLURM_map_nuclconservationscores_genomic_to_transcriptomic_coords.sh		SLURM_map_nuclconservationscores_genomic_to_transcriptomic_coords.sh
Step-by-step_Protocol.txt		Step-by-step_Protocol.txt
Transcriptome_mapping_9311_Bowtie2.sh		Transcriptome_mapping_9311_Bowtie2.sh
calc_deltaG_from_datatables.pl		calc_deltaG_from_datatables.pl
countReads2M.py		countReads2M.py
get_snp_conservation_3Kgenomes.pl		get_snp_conservation_3Kgenomes.pl
index_builder_9311_ref_transcriptome.sh		index_builder_9311_ref_transcriptome.sh
index_builder_nipponbare_ref_genome.sh		index_builder_nipponbare_ref_genome.sh
map_nuclconservationscores_genome_transcriptome_coords.pl		map_nuclconservationscores_genome_transcriptome_coords.pl
qc_submit_jobs.sh		qc_submit_jobs.sh
stopcounts_coverage_fraction.pl		stopcounts_coverage_fraction.pl
trim_9311.sh		trim_9311.sh
trim_nipponbare.sh		trim_nipponbare.sh