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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 23 16

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  4. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

  5. dynamic-foraging-task dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    Python 5 4

  6. exa-spim-hardware exa-spim-hardware Public

    5

Repositories

Showing 10 of 268 repositories
  • aind-metadata-entry-js Public

    Metadata entry using javascript

    AllenNeuralDynamics/aind-metadata-entry-js’s past year of commit activity
    JavaScript 1 MIT 2 11 1 Updated Oct 24, 2024
  • aind-fip-dff Public

    This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

    AllenNeuralDynamics/aind-fip-dff’s past year of commit activity
    Python 0 MIT 0 4 0 Updated Oct 24, 2024
  • Aind.Behavior.ExperimentLauncher Public

    Source for for a minimal framework that can be used to build experimental interfaces

    AllenNeuralDynamics/Aind.Behavior.ExperimentLauncher’s past year of commit activity
    Python 1 MIT 0 4 0 Updated Oct 24, 2024
  • lamf_analysis_lims Public

    Dev site for testing analysis pipelines and qc for learning mFISH project. Anything related to 2p data (plus behavior and spatial transcriptomics)

    AllenNeuralDynamics/lamf_analysis_lims’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 24, 2024
  • aind-ophys-utils Public

    Repo for Ophys utils

    AllenNeuralDynamics/aind-ophys-utils’s past year of commit activity
    Python 0 MIT 0 35 2 Updated Oct 24, 2024
  • metadata-chatbot Public

    LLM (Anthropic Claude) based chatbot that can query, ingest and summarize metadata in a conversational form

    AllenNeuralDynamics/metadata-chatbot’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 24, 2024
  • aind-data-transfer-service Public

    FastAPI service to run data compression and transfer jobs on the hpc

    AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity
    Python 1 MIT 0 15 (1 issue needs help) 0 Updated Oct 24, 2024
  • aind-metadata-service Public

    Service to retrieve Labtracks/Sharepoint info using a REST API

    AllenNeuralDynamics/aind-metadata-service’s past year of commit activity
    Python 3 MIT 1 26 0 Updated Oct 24, 2024
  • aind-watchdog-service Public

    Data staging service that prepares acquistion data for cloud upload to Amazon S3 and Code Ocean processing.

    AllenNeuralDynamics/aind-watchdog-service’s past year of commit activity
    Python 2 MIT 1 19 2 Updated Oct 24, 2024
  • view Public

    Model/View for exa-spim

    AllenNeuralDynamics/view’s past year of commit activity
    Python 3 1 10 1 Updated Oct 24, 2024
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