Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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dynamic-foraging-task
dynamic-foraging-task PublicBonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control
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Repositories
- aind-fip-dff Public
This capsule takes an input raw NWB file of fiber data and creates processed DFF traces
AllenNeuralDynamics/aind-fip-dff’s past year of commit activity - Aind.Behavior.ExperimentLauncher Public
Source for for a minimal framework that can be used to build experimental interfaces
AllenNeuralDynamics/Aind.Behavior.ExperimentLauncher’s past year of commit activity - lamf_analysis_lims Public
Dev site for testing analysis pipelines and qc for learning mFISH project. Anything related to 2p data (plus behavior and spatial transcriptomics)
AllenNeuralDynamics/lamf_analysis_lims’s past year of commit activity - metadata-chatbot Public
LLM (Anthropic Claude) based chatbot that can query, ingest and summarize metadata in a conversational form
AllenNeuralDynamics/metadata-chatbot’s past year of commit activity - aind-data-transfer-service Public
FastAPI service to run data compression and transfer jobs on the hpc
AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity - aind-watchdog-service Public
Data staging service that prepares acquistion data for cloud upload to Amazon S3 and Code Ocean processing.
AllenNeuralDynamics/aind-watchdog-service’s past year of commit activity