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Replace imports of distutils. #385

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Replace imports of distutils. #385

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4 changes: 2 additions & 2 deletions bmtk/analyzer/spikes_analyzer.py
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Original file line number Diff line number Diff line change
Expand Up @@ -24,8 +24,8 @@
import numpy as np

try:
from distutils.version import LooseVersion
use_sort_values = LooseVersion(pd.__version__) >= LooseVersion('0.19.0')
from packaging.version import Version
use_sort_values = Version(pd.__version__) >= Version('0.19.0')

except:
use_sort_values = False
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4 changes: 2 additions & 2 deletions bmtk/utils/compile_mechanisms/compile_mechanisms.py
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
import os
import logging
from subprocess import call
from distutils.dir_util import copy_tree
from shutil import copytree


logger = logging.getLogger(__name__)
Expand All @@ -28,4 +28,4 @@ def copy_modfiles(mechanisms_dir, cached_dir=None):
cached_dir = os.path.join(local_path, '..', 'scripts/bionet/mechanisms')

logger.info('Copying mod files from {} to {}'.format(cached_dir, mechanisms_dir))
copy_tree(cached_dir, mechanisms_dir)
copytree(cached_dir, mechanisms_dir, dirs_exist_ok=True)
4 changes: 2 additions & 2 deletions bmtk/utils/create_environment/env_builder.py
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Expand Up @@ -27,7 +27,7 @@
from subprocess import call
from collections import OrderedDict
import logging
from distutils.dir_util import copy_tree
from shutil import copytree

from bmtk.utils.compile_mechanisms import copy_modfiles, compile_mechanisms

Expand Down Expand Up @@ -270,7 +270,7 @@ def _create_components_dir(self, components_dir, with_examples=True):

if with_examples:
logger.info(' Copying files from {}.'.format(src_dir))
copy_tree(src_dir, trg_dir)
copytree(src_dir, trg_dir, dirs_exist_ok=True)

# return components_config
self._circuit_config['components'] = components_config
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6 changes: 3 additions & 3 deletions bmtk/utils/sim_setup.py
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Expand Up @@ -29,7 +29,7 @@
from optparse import OptionParser
from collections import OrderedDict
import logging
from distutils.dir_util import copy_tree
from shutil import copytree


logger = logging.getLogger(__name__)
Expand Down Expand Up @@ -248,7 +248,7 @@ def _create_components_dir(self, components_dir, with_examples=True):

if with_examples:
logger.info(' Copying files from {}.'.format(src_dir))
copy_tree(src_dir, trg_dir)
copytree(src_dir, trg_dir, dirs_exist_ok=True)

# return components_config
self._circuit_config['components'] = components_config
Expand Down Expand Up @@ -852,4 +852,4 @@ def membrane_report_parser(option, opt, value, parser):
elif target_sim == 'filternet':
build_env_filternet(base_dir=base_dir, network_dir=options.network_dir, tstop=options.tstop,
include_examples=options.include_examples,
config_file=options.config_file)
config_file=options.config_file)
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