Merge branch 'main' into jpf/proj-profile

AlgebraicJulia · Aug 1, 2024 · c29d58d · c29d58d
2 parents e60d006 + 912238f
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diff --git a/.github/workflows/build_quarto.yml b/.github/workflows/build_quarto.yml
@@ -5,7 +5,7 @@ on:
   pull_request:
 jobs:
   render:
-    uses: AlgebraicJulia/.github/.github/workflows/render_quarto.yml@main
+    uses: ./.github/workflows/render_quarto.yml
     with:
       build_all: false
       save_build: true

diff --git a/.github/workflows/render_quarto.yml b/.github/workflows/render_quarto.yml
@@ -0,0 +1,57 @@
+name: Render Quarto Website
+on:
+  workflow_call:
+    inputs:
+      build_all:
+        description: "Whether or not to delete the _freeze directory before rendering"
+        required: true
+        type: boolean
+      save_build:
+        description: "Whether or not to upload _site and _freeze artifacts"
+        required: true
+        type: boolean
+jobs:
+  render:
+    runs-on: ubuntu-latest
+    env:
+      # Work around GR segfault: https://github.com/jheinen/GR.jl/issues/422
+      GKSwstype: nul
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          persist-credentials: false
+      - name: Install Quarto
+        uses: quarto-dev/quarto-actions/setup@v2
+      - name: Intall LaTeX dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install graphviz pdf2svg dvisvgm
+          quarto install tinytex --update-path
+          tlmgr update --self
+          tlmgr install tikz-cd luatex85
+      - name: Install Julia
+        uses: julia-actions/setup-julia@v1
+        with:
+          version: 1.8
+      - name: Setup up Julia Project
+        run: |
+          python3 -m pip install jupyter
+          julia -e 'using Pkg; Pkg.activate("."); Pkg.instantiate();'
+      - name: Remove frozen posts
+        if: ${{ inputs.build_all }}
+        run: |
+          rm -rf _freeze _site
+      # TODO: IF RENDER FAILS, OPEN NEW ISSUE OF BROKEN POSTS
+      - name: Render Quarto Project
+        uses: quarto-dev/quarto-actions/render@v2
+      - uses: actions/upload-artifact@v3
+        if: ${{ inputs.save_build }}
+        with:
+          name: _site
+          path: _site
+      - uses: actions/upload-artifact@v3
+        if: ${{ inputs.save_build }}
+        with:
+          name: _freeze
+          path: _freeze
diff --git a/members/benbumpus.qmd b/members/benbumpus.qmd
@@ -4,8 +4,7 @@ image: images/benbumpus.png
 start_year: 2022
 date: 10/1/2022
 role: Research Assistant Professor
-degree: 
-program:
+degree: PhD
 status: Writing
 href: |- 
     <a href="merlinsnotebook.com" class="btn btn-secondary">Site</a>
@@ -14,6 +13,9 @@ tools:
     href: members/benbumpus.qmd
 about:
     template: solana
+    links:
+        - text: Website
+          href: https://bmbumpus.com/
 ---
 
 is a faculty research scientist and the lead of algorithms subprojects within the GATAS lab. 

diff --git a/members/lukemorris.qmd b/members/lukemorris.qmd
@@ -13,14 +13,18 @@ tools:
     href: members/lukemorris.qmd
 about:
     template: solana
+    links:
+        - text: Website
+          href: https://www.cise.ufl.edu/~luke.morris
+        - icon: Github
+          text: Github
+          href: https://github.com/lukem12345
 ---
 is leading development on the CombinatorialSpaces.jl and Decapodes.jl projects.
 
 ... for representing multiphysics models and automatically generating simulations from those representations.
 --- 
 
-[Personal Website](https://www.cise.ufl.edu/~luke.morris)
-
 I am interested in problems that applied scientists face when they do any computational work. In particular, I mean the problems of developing models faster, and making the models themselves faster and more accurate. I lead a couple of projects on this front: [Decapodes.jl](https://github.com/AlgebraicJulia/Decapodes.jl) and [CombinatorialSpaces.jl](https://github.com/AlgebraicJulia/CombinatorialSpaces.jl).
 
 We use techniques from Applied Category Theory (ACT) to represent models (as "Decapodes") and how models compose together. These models are systems of partial differential equations (PDEs). ACT - the "science of composition" - lets us analyze scientific models as mathematical objects in their own right. [Catlab.jl](https://algebraicjulia.github.io/Catlab.jl/stable/) - an ACT programming library - enables us to write a library in an ACT-programming style, without sacrificing performance. We use Catlab's implementation of "C-Sets" by specifying a small Decapode "schema", which produces an efficient in-memory database to store a model. Doing algebra on these models then becomes as efficient as performing database operations. It is quite natural to interpret a system of PDEs as a relational database, adopting the point of view that such systems describe how physical quantities relate to one another.

diff --git a/project/sheaves.qmd b/project/sheaves.qmd
@@ -26,14 +26,15 @@ listing:
       - ../members/benbumpus.qmd
       - ../members/wilmerleal.qmd
     categories: true
-    fields: [image, title, start_year, degree, program]
+    fields: [image, title, start_year, degree, role]
     sort: none
     page-size: 10
     field-display-names: 
       title: Name
       start_year: "Member Since"
       degree: "Degree"
       program: "Program"
+      role: "Role"
 ---
 
 [StructuredDecompositions.jl](https://github.com/AlgebraicJulia/StructuredDecompositions.jl)