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Can we get correct p-values and FDRs in ssgsea now? #223

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Peevin opened this issue Sep 21, 2023 · 1 comment
Open

Can we get correct p-values and FDRs in ssgsea now? #223

Peevin opened this issue Sep 21, 2023 · 1 comment

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@Peevin
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Peevin commented Sep 21, 2023

Hi, thank you so much for your charming implementation.
I saw in your GitHub issue responses that ssgsea couldn't obtain correct p-values and FDRs, but that was in 2019. Has this issue been fixed now, and can we obtain correct p-values and FDRs by setting the permutation parameter in ssgsea?
@zqfang
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zqfang commented Oct 2, 2023

I'm sorry. FDR and p-values for ssGSEA won't be implemented.

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@zqfang @Peevin