DESCRIPTION

Package: xtail
Type: Package
Title: Genome-wide assessment of differential translations with ribosome profiling data
Version: 1.2.0
Authors@R:
    c(person("Zhengtao", "Xiao", email="xzt13@tsinghua.org.cn",
             role = c("aut","cre")),
      person("Qin", "Zou", role = "aut"),
      person("Yu", "Liu", role = "aut"),
      person("Xuerui", "Yang", role = "aut"),
      person("Rongyao", "Huang", email = "THUhry12@163.com", role = "ctb"))
Description: 
    The xtail package implements the method of the same name to discover the 
    genes undergoing differential translation across two different experiment 
    conditions using both RNA-seq data and ribosome profiling data. For 
    estimation the method relies on DESeq2. For visualizing the results
    plotting functions are available as well.
License:
    GPL (>= 3) | file LICENSE
Encoding: UTF-8
NeedsCompilation: yes
biocViews: 
    Software, DifferentialExpression
Depends:
    R (>= 4.0), 
    DESeq2,
    S4Vectors,
    BiocGenerics
Imports:
    methods,
    stats,
    utils,
    parallel,
    Rcpp (> 0.10.1),
    matrixStats,
    SummarizedExperiment,
    locfit,
    ggplot2
Suggests:
    knitr,
    rmarkdown,
    BiocStyle,
    testthat
Collate:
    'xtail-package.R'
    'xtail-class.R'
    'RcppExports.R'
    'wrapper-functions.R'
    'estimate-functions.R'
    'xtail.R'
    'runXtail.R'
    'plot-utils.R'
    'plot-fc.R'
    'plot-r.R'
    'plot-volcano.R'
LinkingTo:
    Rcpp,
    RcppArmadillo
VignetteBuilder: knitr
URL: https://github.com/xryanglab/xtail
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1