- Xenonflow now cleans up the remote directory when a job completes
- Xenonflow now cleans up the output directory correctly when deleting a job
- Added an option to the sourceDirectory config that controls deleting the input to a job when it is completed.
- Adding cwl compliance check and fixed a bunch of related bugs
- Reduced logging output
- Fixed various bugs
- Fixed a number of crashes related to the tests ran by the compliance test.
- Fixing output bug when parameter has # in its id
- Fixing file and directory array location wrangling
- Fixed directory tests and staging
- Fixing directory path staging for cwl check: nr85 directory_input_docker
- Various bugfixes
- Fixed uri's supplied by xenonflow when runing behind a proxy server
- Updated admin interface to connect to the backend using its current location
- You can now add xenonflow_jobid or xenonflow_jobname as input to a workflow to be run xenonflow will then supply these values automatically.
- Added XENONFLOW_FILES environment variable for use in the config.yml
- Split SourceFileSystem setting into sourceFileSystem for inputs and cwlFileSystem for workflow storage
- Added check on job submission whether the referenced workflow exists on the cwlFileSystem
- Added /workflows api that supplies a list of available workflows in the cwlFileSystem
- Upgrade admin interface to Angular 11
- Upgrade to Xenon 3
- Fixed pending jobs throwing an error
Output file serving and cwl parsing updates
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Output files are now served if they are stored on the local filesystem
- This requires a new config block with a parameter "hosted" set to true: targetFileSystem: adaptor: file location: /home/bweel/Documents/projects/xenon-flow/output/ hosted: true
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Output file paths are now set to this location if used
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Parsing of cwl has been updated to support Maps in addition to arrays for inputs and outputs
- First pre-release
- Updated to Xenon 2.1.0