Cant kekulize molecule while running get_vocab.py

[rogerthat-0420]

while running get_vocab.py on an experiment dataset of the first 40 lines in data/chembl/all.txt , i get the following error message :

I've tried going to the respective line in chem_utils.py and checking it out, but everything seems to be fine there. What could be the issue?

[hasaki321]

I have the same problem as you while following the guide in the README.
My enviorment:
Python 3.9.17
rdkit 2023.03.2
networkx 2.8.7
torch 2.0.1

[sabagh1994]

Hi @hasaki321 and @rogerthat-0420. Were you able to solve this issue? I have the same problem.

[rogerthat-0420]

I have the same problem as you while following the guide in the README. My enviorment: Python 3.9.17 rdkit 2023.03.2 networkx 2.8.7 torch 2.0.1

Hi @hasaki321 and @rogerthat-0420. Were you able to solve this issue? I have the same problem.

I dont have this issue anymore. i think working with python 3.12, rdkit 2024.3.1 and torch 2.4.1 solved the issues. Lmk if yall sill face an issue.