From f8b9bfc8303ea3e414862e0b56f089d004625aa5 Mon Sep 17 00:00:00 2001 From: wasserth Date: Mon, 22 Jul 2024 16:01:52 +0200 Subject: [PATCH] update brain structures documentation --- CHANGELOG.md | 3 +++ README.md | 3 ++- totalsegmentator/map_to_binary.py | 4 ++-- 3 files changed, 7 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 9e085e7bb..6ebff6955 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,4 +1,7 @@ ## Master + + +## Release 2.4.0 * add brain structures * add liver vessels * greatly improved phase classification model diff --git a/README.md b/README.md index 25a001767..981c8c782 100644 --- a/README.md +++ b/README.md @@ -78,8 +78,9 @@ Available with a license (free licenses available for non-commercial usage [here * **appendicular_bones**: patella, tibia, fibula, tarsal, metatarsal, phalanges_feet, ulna, radius, carpal, metacarpal, phalanges_hand * **tissue_types**: subcutaneous_fat, torso_fat, skeletal_muscle * **tissue_types_mr**: subcutaneous_fat, torso_fat, skeletal_muscle (for MR images) +* **brain_structures**: brainstem, subarachnoid_space, venous_sinuses, septum_pellucidum, cerebellum, caudate_nucleus, lentiform_nucleus, insular_cortex, internal_capsule, ventricle, central_sulcus, frontal_lobe, parietal_lobe, occipital_lobe, temporal_lobe, thalamus * **vertebrae_body**: vertebral body of all vertebrae (without the vertebral arch) -* **face**: face_region +* **face**: face_region (for anonymization) Usage: ``` diff --git a/totalsegmentator/map_to_binary.py b/totalsegmentator/map_to_binary.py index 3917339d6..bd3929ec0 100644 --- a/totalsegmentator/map_to_binary.py +++ b/totalsegmentator/map_to_binary.py @@ -372,9 +372,9 @@ 3: "liver" }, "brain_structures": { - 1: "brainstem", + 1: "brainstem", # + brain_parenchyma 2: "subarachnoid_space", - 3: "venous_sinuses", + 3: "venous_sinuses", # + dural folds 4: "septum_pellucidum", 5: "cerebellum", 6: "caudate_nucleus",