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Continued support for --learn-lib? #1244

Answered by vdemichev
enonimos asked this question in Q&A
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Hi Todd,

This is no longer supported. The reason is basically that there are no known cases when this 'basic' predictor outperformed the deep learning one, hence the reason to discontinue. If the deep learning one really struggles with a particular modification, the solution is to use e.g. AlphaPeptDeep to generate a library for DIA-NN.

--strip-unknown-mods is now default in DIA-NN since 1.9, e.g. no need to turn it on.

Best,
Vadim

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