diff --git a/download_urls.yml b/download_urls.yml index 33914fa..c52baee 100644 --- a/download_urls.yml +++ b/download_urls.yml @@ -58,12 +58,12 @@ - url: ftp://ftp.clinicalgenome.org/ClinGen_gene_curation_list_GRCh37.tsv - url: ftp://ftp.clinicalgenome.org/ClinGen_gene_curation_list_GRCh38.tsv -- url: https://storage.googleapis.com/gtex_analysis_v8/annotations/GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt +- url: https://storage.cloud.google.com/adult-gtex/bulk-gex/v8/rna-seq/GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt excerpt_strategy: strategy: no-excerpt count: null -- url: https://storage.googleapis.com/gtex_analysis_v8/rna_seq_data/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct.gz +- url: https://storage.cloud.google.com/adult-gtex/bulk-gex/v8/rna-seq/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct.gz excerpt_strategy: strategy: manual count: null diff --git a/excerpt-data/2295c2a0487d0dab/url.txt b/excerpt-data/2295c2a0487d0dab/url.txt deleted file mode 100644 index d22392c..0000000 --- a/excerpt-data/2295c2a0487d0dab/url.txt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:ce3752f6604f5e7c8b219777d805a4b911dfc3ff88260db85a50064b05bfa68e -size 119 diff --git a/excerpt-data/2295c2a0487d0dab/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct.gz b/excerpt-data/95e8d788836873e9/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct.gz similarity index 100% rename from excerpt-data/2295c2a0487d0dab/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct.gz rename to excerpt-data/95e8d788836873e9/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct.gz diff --git a/excerpt-data/95e8d788836873e9/url.txt b/excerpt-data/95e8d788836873e9/url.txt new file mode 100644 index 0000000..2bdc79c --- /dev/null +++ b/excerpt-data/95e8d788836873e9/url.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3c0be28ae237143a1b1143b6e129be9e652346c01c4c7f9b924ba0857c247732 +size 122 diff --git a/excerpt-data/9e484a896c7516d6/url.txt b/excerpt-data/9e484a896c7516d6/url.txt deleted file mode 100644 index 1b00028..0000000 --- a/excerpt-data/9e484a896c7516d6/url.txt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:bbd6d3ca32a3e18599513f06b88bac0c8896685a79af7e84c4f723a9ef2900b8 -size 112 diff --git a/excerpt-data/9e484a896c7516d6/GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt b/excerpt-data/d0a5951ccb4cd824/GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt similarity index 100% rename from excerpt-data/9e484a896c7516d6/GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt rename to excerpt-data/d0a5951ccb4cd824/GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt diff --git a/excerpt-data/d0a5951ccb4cd824/url.txt b/excerpt-data/d0a5951ccb4cd824/url.txt new file mode 100644 index 0000000..90f8837 --- /dev/null +++ b/excerpt-data/d0a5951ccb4cd824/url.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4d9cc185d363d4d24c084b1e78bbc4c6e21cd06c1147a0b14e1405cf5ef3ffce +size 116 diff --git a/rules/work/genes/gtex.smk b/rules/work/genes/gtex.smk index db16658..c33792e 100644 --- a/rules/work/genes/gtex.smk +++ b/rules/work/genes/gtex.smk @@ -34,11 +34,11 @@ rule genes_gtex_v8_download: # -- download GTex v8 gene expression data r""" wget --no-check-certificate \ -O {output.attributes} \ - https://storage.googleapis.com/gtex_analysis_v8/annotations/GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt + https://storage.cloud.google.com/adult-gtex/bulk-gex/v8/rna-seq/GTEx_Analysis_v8_Annotations_SampleAttributesDS.txt wget --no-check-certificate \ -O {output.genes_tpm} \ - https://storage.googleapis.com/gtex_analysis_v8/rna_seq_data/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct.gz + https://storage.cloud.google.com/adult-gtex/bulk-gex/v8/rna-seq/GTEx_Analysis_2017-06-05_v8_RNASeQCv1.1.9_gene_tpm.gct.gz md5sum {output.attributes} > {output.attributes_md5} md5sum {output.genes_tpm} > {output.genes_tpm_md5}