Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error when adding 'gene' feature to 50k feature and running 'Filter, Normalize & Reduce' #4

Open
Pacomito opened this issue Mar 7, 2022 · 0 comments

Comments

@Pacomito
Copy link
Member

Pacomito commented Mar 7, 2022

3 Samples in 50k :
T_460684H_H3K27me3_50000
SA_AD1766_H3K27me3_50000
SA_AG5988_H3K27me3_50000

Samples are sparse matrices & have same names for 50kbp and feature
Adding the gene features worked fine but the bug occured when clicking on 'Filter, Normalize & Reduce' with the features 'gene' selected (fitering only features).

Warning: Error in $<-.data.frame: replacement has 1016 rows, data has 1771
  86: stop
  85: $<-.data.frame
  83: num_cell_after_QC_filt_scExp
  82: output$num_cell_after_QC_filt [/home/pprompsy/R/x86_64-pc-linux-gnu-library/4.1/ChromSCape/server.R#946]
   2: shiny::runApp
   1: launchApp
[1] "Data loading..."
Running on alternative experiment :gene
Timing stopped at: 0.004 0 0.004
Warning: Error in h: error in evaluating the argument 'x' in selecting a method for function 'print': ChromSCape::create_scExp - datamatrix and annot should containthe same number of cells
  2: shiny::runApp
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant