.pre-commit-config.yaml

repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.4.0
    hooks:
      - id: trailing-whitespace
        args: [--markdown-linebreak-ext=md, --markdown-linebreak-ext=pandoc]
        exclude: "^Tests/Data/.*|^web/static|^Documentation/.vale/.*|.*\\.patch"
      - id: check-added-large-files
        args: [--maxkb 1024]
      - id: check-merge-conflict
      - id: check-xml
        exclude: '^Tests/Data/.*\.xml'
      - id: check-yaml
        exclude: "^scripts/ci/.*|.cmake-format.yaml"
      - id: check-toml
      - id: check-executables-have-shebangs
      - id: check-shebang-scripts-are-executable
      - id: check-json
      - id: fix-byte-order-marker
        exclude: "^Documentation/.vale/.*"
      - id: mixed-line-ending
        exclude: ".*\\.vtu"
  - repo: https://github.com/psf/black
    rev: 23.1.0
    hooks:
      - id: black
        exclude: "LinearMFront/generate_ref.py"
  # Run black on markdown notebooks
  - repo: https://github.com/nbQA-dev/nbQA
    rev: 1.7.0
    hooks:
      - id: nbqa-black
        additional_dependencies: [jupytext, black==23.1.0]
  - repo: https://github.com/codespell-project/codespell
    rev: v2.2.2
    hooks:
      - id: codespell
        exclude: 'Tests/Data/.*|.*\.ya?ml|.*\.bib|^web/content/imprint.md|^GeoLib/IO/XmlIO/OpenGeoSysSTN.xsd|^Applications/FileIO/Legacy/OGSIOVer4.cpp|^scripts/cmake/CPM.cmake|Documentation/.vale/.*|.*\.ipynb|.*\.svg'
  - repo: https://github.com/cheshirekow/cmake-format-precommit
    rev: v0.6.13
    hooks:
      - id: cmake-format
        additional_dependencies: ["cmakelang[YAML]"]
        args: [--config=.cmake-format.yaml]
        exclude: "CPM.cmake|FindFilesystem.cmake|FindMKL.cmake|JSONParser.cmake|Tests.cmake"
      - id: cmake-lint
        additional_dependencies: ["cmakelang[YAML]"]
        exclude: "CPM.cmake|FindFilesystem.cmake|FindMKL.cmake|JSONParser.cmake|BuildExternalProject.cmake"
  - repo: https://github.com/igorshubovych/markdownlint-cli
    rev: v0.33.0
    hooks:
      - id: markdownlint
  - repo: local
    hooks:
      - id: git-diff-check
        name: Run git diff --check
        entry: git diff --check --cached -- ':!*.md' ':!*.pandoc' ':!*.asc' ':!*.dat' ':!*.ts'
        language: system
        exclude: "Tests/Data/.*|web/static/images/xsd"
        stages: [commit, manual]
      - id: file-extensions
        name: Check file extensions
        entry: scripts/hooks/pre-commit-file-extensions.sh
        language: system
        files: '.*\.cpp'
        stages: [commit, manual]
      - id: git-clang-format
        name: git-clang-format
        entry: bash -c 'if command -v git-clang-format &> /dev/null; then git clang-format; else exit 0; fi'
        language: system
        pass_filenames: false
        files: \.(h|cpp)$
  - repo: https://github.com/errata-ai/vale
    rev: v2.24.4
    hooks:
      - id: vale
        name: vale sync
        pass_filenames: false
        args: [sync]
      - id: vale
        args: [--output=line, --minAlertLevel=error]
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: "v0.5.0"
    hooks:
      - id: ruff
        types_or: [python, pyi, jupyter]
        args: [--output-format=full]
  # A variant of the ruff hook above that automatically applies proposed fixes.
  # Runs only manually.
  # Run this hook (and all other manual hooks if any) with:
  # pre-commit run --hook-stage manual
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: "v0.5.0"
    hooks:
      - id: ruff
        types_or: [python, pyi, jupyter]
        args: [--output-format=full, --fix, --exit-non-zero-on-fix]
        stages: [manual]
  # Enable on demand, run with
  #     pre-commit run --all-files clang-format
  #
  # - repo: https://github.com/pocc/pre-commit-hooks
  #   rev: master
  #   hooks:
  #     - id: clang-format
  #       args: ["-i"]