'is not a readable non-empty FASTA file'

[rlporter24]

Hi,

I am trying to run prokka from the docker image, and keep encountering the error that my input '* is not a readable non-empty FASTA file'. The files I have tested are non empty, readable, and in the fasta format, but I tested the plasmid.fna included in the repo just to be sure, and encountered the same issue.

The files details are here:

And an example run and error output are here:

Please let me know if there are any other details I can provide to get this cleared up.

[rlporter24]

Just to follow up, I've verified that the three conditions met previously are met for this input:

[mikailbala]

I think you need to mount the input directory so docker can access the file.

docker run -v :/mnt staphb/prokka:latest prokka --outdir /mnt/annotation /mnt/contigs.fa