Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Spike in control contigs are in separate bam from genomic contigs #36

Open
swils6 opened this issue Nov 2, 2021 · 1 comment
Open

Spike in control contigs are in separate bam from genomic contigs #36

swils6 opened this issue Nov 2, 2021 · 1 comment

Comments

@swils6
Copy link
Collaborator

swils6 commented Nov 2, 2021

Currently, the way my pipeline works is that it outputs a bam for the spike-in controls, and another for the genomic contigs. Due to this, I cannot run scan_genomic_contigs() because if I run on only the spike-in bam, there are no genomic contigs present.

Can we have a function to load in spike in data and make GLM and another function to load in genomic contigs to use GLM on?
@swils6
Copy link
Collaborator Author

swils6 commented Nov 2, 2021

disregard - I have the spikes loaded in separately now.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@swils6