DESCRIPTION

Package: compartmap
Type: Package
Title: A/B compartment inference from ATAC-seq and methylation array data
Description: Compartmap performs shrunken A/B compartment inference from ATAC-seq, BS-seq, and methylation arrays.
Version: 1.13.30
Date: 2021-06-25
Authors@R: c(person("Benjamin", "Johnson", role = c("aut", "cre"),
                    email = "ben.johnson@vai.org",),
             person("Tim", "Triche", role = c("aut")),
	     person("Hui", "Shen", role = c("aut")),
             person("Kasper", "Hansen", role = c("aut")),
             person("Jean-Philippe", "Fortin", role = c("aut")))
URL: https://github.com/biobenkj/compartmap
BugReports: https://github.com/biobenkj/compartmap/issues
Encoding: UTF-8
License: GPL-3 + file LICENSE
biocViews: Genetics, Epigenetics, ATACSeq, MethylSeq, MethylationArray, RNASeq
Depends: 
   R (>= 4.0.0),
   SummarizedExperiment,
	 RaggedExperiment,
	 BiocSingular,
	 bsseq,
	 HDF5Array,
   BSgenome.Hsapiens.UCSC.hg38,
   BSgenome.Mmusculus.UCSC.mm9
Imports: 
   GenomicRanges,
   gtools,
   parallel,
   grid,
	 viridis,
	 ggplot2,
   DelayedArray,
   Homo.sapiens,
   Mus.musculus,
   RColorBrewer,
   rtracklayer, 
	 DelayedMatrixStats,
	 impute,
	 Matrix
Suggests: covr,
          testthat,
          knitr,
          Rcpp
RoxygenNote: 7.1.1
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr