DESCRIPTION

Package: biscuiteer
Type: Package
Title: Convenience Functions for Biscuit
Description: A test harness for bsseq loading of Biscuit output, summarization
             of WGBS data over defined regions and in mappable samples, with or
             without imputation, dropping of mostly-NA rows, age estimates, etc.
Version: 1.17.3
Date: 2024-03-01
Authors@R: c(person("Tim", "Triche", role = c("aut")),
             person("Wanding", "Zhou", role = c("aut")),
             person("Benjamin", "Johnson", role = c("aut")),
             person("Jacob", "Morrison", role = c("aut", "cre"),
                    email = "jacob.morrison@vai.org"),
            person("Lyong", "Heo", role = c("aut")),
            person("James", "Eapen", role = c("aut")))
URL: https://github.com/trichelab/biscuiteer
BugReports: https://github.com/trichelab/biscuiteer/issues
License: GPL-3
Depends: R (>= 4.1.0), 
         biscuiteerData,
         bsseq
Imports: readr,
         qualV,
         Matrix, 
         impute,
         HDF5Array,
         S4Vectors, 
         Rsamtools,
         data.table,
         Biobase,
         GenomicRanges,
         IRanges,
         BiocGenerics,
         VariantAnnotation,
         DelayedMatrixStats,
         SummarizedExperiment,
         GenomeInfoDb,
         Mus.musculus,
         Homo.sapiens,
         matrixStats,
         rtracklayer,
         QDNAseq,
         dmrseq,
         methods,
         utils,
         R.utils,
         gtools,
         BiocParallel
Suggests: DSS, 
          covr,
          knitr,
          rmarkdown,
          markdown,
          rlang,
          scmeth,
          pkgdown, 
          roxygen2,
          testthat,
          QDNAseq.hg19,
          QDNAseq.mm10,
          BiocStyle
biocViews: DataImport, MethylSeq, DNAMethylation
Encoding: UTF-8
RoxygenNote: 7.2.3
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr