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installation problem #424

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brophyj opened this issue Aug 19, 2023 · 5 comments
Open

installation problem #424

brophyj opened this issue Aug 19, 2023 · 5 comments

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@brophyj
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brophyj commented Aug 19, 2023

I can't install sl3 and the problem seems to be the package imputeMIssings is not available on cran or GitHub.

R> install_github("tlverse/sl3@devel")
Downloading GitHub repo tlverse/sl3@devel
Skipping 1 packages not available: imputeMissings
── R CMD build ──────────────────────────────────────────────────────────────────────────────────────────────────────────
✔  checking for file ‘/private/var/folders/vz/g1j5pr8n7tg786zcwmv2dx8c0000gp/T/RtmpfjYW9M/remotesb0051fb03685/tlverse-sl3-fa669c7/DESCRIPTION’ ...
─  preparing ‘sl3’:
✔  checking DESCRIPTION meta-information ...
─  installing the package to process help pages
         -----------------------------------
   ERROR: dependency ‘imputeMissings’ is not available for package ‘sl3’
─  removing ‘/private/var/folders/vz/g1j5pr8n7tg786zcwmv2dx8c0000gp/T/RtmpsQleDd/Rinst1107e74f92463/sl3’
         -----------------------------------
   ERROR: package installation failed
Error: Failed to install 'sl3' from GitHub:
  ! System command 'R' failed
R> session_info()
─ Session info ────────────────────────────────────────────────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.3.1 (2023-06-16)
 os       macOS Ventura 13.4.1
 system   x86_64, darwin20
 ui       RStudio
 language (EN)
 collate  en_US.UTF-8
 ctype    en_US.UTF-8
 tz       America/Toronto
 date     2023-08-18
 rstudio  2023.06.0+421 Mountain Hydrangea (desktop)
 pandoc   3.1.1 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/ (via rmarkdown)

─ Packages ────────────────────────────────────────────────────────────────────────────────────────────────────────────
 ! package     * version date (UTC) lib source
   backports     1.4.1   2021-12-13 [1] CRAN (R 4.3.0)
   broom       * 1.0.5   2023-06-09 [1] CRAN (R 4.3.0)
   cachem        1.0.8   2023-05-01 [1] CRAN (R 4.3.0)
   callr         3.7.3   2022-11-02 [1] CRAN (R 4.3.0)
   cli           3.6.1   2023-03-23 [1] CRAN (R 4.3.0)
   colorspace    2.1-0   2023-01-23 [1] CRAN (R 4.3.0)
   crayon        1.5.2   2022-09-29 [1] CRAN (R 4.3.0)
   curl          5.0.1   2023-06-07 [1] CRAN (R 4.3.0)
   desc          1.4.2   2022-09-08 [1] CRAN (R 4.3.0)
   devtools    * 2.4.5   2022-10-11 [1] CRAN (R 4.3.0)
 V digest        0.6.32  2023-07-07 [1] CRAN (R 4.3.0) (on disk 0.6.33)
   distill     * 1.5     2022-09-07 [1] CRAN (R 4.3.0)
   downlit       0.4.2   2022-07-05 [1] CRAN (R 4.3.0)
   dplyr       * 1.1.2   2023-04-20 [1] CRAN (R 4.3.0)
   ellipsis      0.3.2   2021-04-29 [1] CRAN (R 4.3.0)
   evaluate      0.21    2023-05-05 [1] CRAN (R 4.3.0)
   fansi         1.0.4   2023-01-22 [1] CRAN (R 4.3.0)
   farver        2.1.1   2022-07-06 [1] CRAN (R 4.3.0)
   fastmap       1.1.1   2023-02-24 [1] CRAN (R 4.3.0)
 V fs            1.6.2   2023-07-20 [1] CRAN (R 4.3.0) (on disk 1.6.3)
   generics      0.1.3   2022-07-05 [1] CRAN (R 4.3.0)
 V ggplot2     * 3.4.2   2023-08-14 [1] CRAN (R 4.3.0) (on disk 3.4.3)
   glue          1.6.2   2022-02-24 [1] CRAN (R 4.3.0)
   gtable        0.3.3   2023-03-21 [1] CRAN (R 4.3.0)
   HistData    * 0.9-1   2023-08-09 [1] CRAN (R 4.3.0)
 V htmltools     0.5.5   2023-08-10 [1] CRAN (R 4.3.0) (on disk 0.5.6)
   htmlwidgets   1.6.2   2023-03-17 [1] CRAN (R 4.3.0)
   httpuv        1.6.11  2023-05-11 [1] CRAN (R 4.3.0)
   janitor     * 2.2.0   2023-02-02 [1] CRAN (R 4.3.0)
   knitr         1.43    2023-05-25 [1] CRAN (R 4.3.0)
   labeling      0.4.2   2020-10-20 [1] CRAN (R 4.3.0)
   later         1.3.1   2023-05-02 [1] CRAN (R 4.3.0)
   lifecycle     1.0.3   2022-10-07 [1] CRAN (R 4.3.0)
   lubridate     1.9.2   2023-02-10 [1] CRAN (R 4.3.0)
   magrittr      2.0.3   2022-03-30 [1] CRAN (R 4.3.0)
   memoise       2.0.1   2021-11-26 [1] CRAN (R 4.3.0)
   mime          0.12    2021-09-28 [1] CRAN (R 4.3.0)
   miniUI        0.1.1.1 2018-05-18 [1] CRAN (R 4.3.0)
   munsell       0.5.0   2018-06-12 [1] CRAN (R 4.3.0)
   pillar        1.9.0   2023-03-22 [1] CRAN (R 4.3.0)
   pkgbuild      1.4.2   2023-06-26 [1] CRAN (R 4.3.0)
   pkgconfig     2.0.3   2019-09-22 [1] CRAN (R 4.3.0)
   pkgload       1.3.2   2022-11-16 [1] CRAN (R 4.3.0)
   prettyunits   1.1.1   2020-01-24 [1] CRAN (R 4.3.0)
   processx      3.8.2   2023-06-30 [1] CRAN (R 4.3.0)
   profvis       0.3.8   2023-05-02 [1] CRAN (R 4.3.0)
   promises      1.2.0.1 2021-02-11 [1] CRAN (R 4.3.0)
   ps            1.7.5   2023-04-18 [1] CRAN (R 4.3.0)
 V purrr         1.0.1   2023-08-10 [1] CRAN (R 4.3.0) (on disk 1.0.2)
   R6            2.5.1   2021-08-19 [1] CRAN (R 4.3.0)
 V Rcpp          1.0.10  2023-07-06 [1] CRAN (R 4.3.0) (on disk 1.0.11)
   remotes       2.4.2   2021-11-30 [1] CRAN (R 4.3.0)
   rlang         1.1.1   2023-04-28 [1] CRAN (R 4.3.0)
 V rmarkdown     2.22    2023-08-14 [1] CRAN (R 4.3.0) (on disk 2.24)
   rprojroot     2.0.3   2022-04-02 [1] CRAN (R 4.3.0)
   rstudioapi    0.14    2022-08-22 [1] CRAN (R 4.3.0)
   scales        1.2.1   2022-08-20 [1] CRAN (R 4.3.0)
   sessioninfo   1.2.2   2021-12-06 [1] CRAN (R 4.3.0)
   shiny         1.7.4   2022-12-15 [1] CRAN (R 4.3.0)
   snakecase     0.11.0  2019-05-25 [1] CRAN (R 4.3.0)
   stringi       1.7.12  2023-01-11 [1] CRAN (R 4.3.0)
   stringr       1.5.0   2022-12-02 [1] CRAN (R 4.3.0)
   tibble        3.2.1   2023-03-20 [1] CRAN (R 4.3.0)
   tidyr         1.3.0   2023-01-24 [1] CRAN (R 4.3.0)
   tidyselect    1.2.0   2022-10-10 [1] CRAN (R 4.3.0)
   timechange    0.2.0   2023-01-11 [1] CRAN (R 4.3.0)
   urlchecker    1.0.1   2021-11-30 [1] CRAN (R 4.3.0)
   usethis     * 2.2.1   2023-06-23 [1] CRAN (R 4.3.0)
   utf8          1.2.3   2023-01-31 [1] CRAN (R 4.3.0)
   vctrs         0.6.3   2023-06-14 [1] CRAN (R 4.3.0)
   withr         2.5.0   2022-03-03 [1] CRAN (R 4.3.0)
 V xfun          0.39    2023-08-09 [1] CRAN (R 4.3.0) (on disk 0.40)
   xtable        1.8-4   2019-04-21 [1] CRAN (R 4.3.0)
   yaml          2.3.7   2023-01-23 [1] CRAN (R 4.3.0)

 [1] /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library

 V ── Loaded and on-disk version mismatch.

───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
@olivierlabayle
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olivierlabayle commented Aug 21, 2023 •
edited
Loading

Hi, same problem here trying to install tlverse!

─  installing the package to process help pages
         -----------------------------------
   ERROR: dependency ‘imputeMissings’ is not available for package ‘sl3’
─  removing ‘/private/var/folders/t1/kx5d52vs4kg8v_d4hhmg193c0000gn/T/RtmpL5PveW/Rinstec9a470423cb/sl3’
         -----------------------------------
   ERROR: package installation failed
Error: Failed to install 'tlverse' from GitHub:
  Failed to install 'sl3' from GitHub:
  ! System command 'R' failed
In addition: Warning message:
package ‘imputeMissings’ is not available for this version of R

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages

@olivierlabayle
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Work around:

curl https://cran.r-project.org/src/contrib/Archive/imputeMissings/imputeMissings_0.0.3.tar.gz -o imputeMissings.tar.gz
tar -zxf imputeMissings.tar.gz
R
devtools::install("imputeMissings/")

@brophyj
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brophyj commented Aug 21, 2023

Easy fix, that works!
Thanks

@jeskowagner
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For convenience, you should also be able to install imputeMissings straight from the former CRAN-source:

devtools::install_github("cran/imputeMissings")

@blind-contours
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Collaborator

This issue should be fixed on devel now so you can download: devtools::install_github("tlverse/sl3@devel")

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@brophyj @jeskowagner @olivierlabayle @blind-contours