build.xml

<?xml version="1.0" encoding="iso-8859-1"?>
<project name="java-genomics-toolkit" default="jar" basedir=".">
  <description>
    build the toolkit
  </description>

  <!-- set global properties for this build -->
  <property name="version" value="1.1.0" />
  <property name="buildnumber" value="1" />
  <property name="copyright" value="Copyright &#xa9; 2011 Timothy Palpant" />
  <property name="reports"   location="reports"/>
  <property name="reports.junit"   location="${reports}/junit"/>
  <property name="reports.junit.xml"   location="${reports.junit}/xml"/>

  <!-- directory variables -->
  <property name="src" location="src" />
  <property name="test" location="test" />
  <property name="build" location="build" />
  <property name="dist" location="dist" />
  <property name="lib" location="lib" />
  <property name="docs" location="docs" />

  <path id="classpath">
    <fileset dir="${lib}">
      <include name="**/*.jar" />
    </fileset>
  </path>

  <!-- compile all Java code -->
  <target name="compile" description="compile the scripts">
    <!-- Create the build directory structure used by compile -->
    <mkdir dir="${build}" />

    <!-- Compile the java code from ${src} into ${build} -->
    <javac srcdir="${src}" destdir="${build}" source="1.7" target="1.7" debug="true">
      <classpath refid="classpath" />
    </javac>

    <!-- Compile the java code from ${test} into ${build} -->
    <javac srcdir="${test}" destdir="${build}" source="1.7" target="1.7" debug="true">
      <classpath location="${build}" />
      <classpath refid="classpath" />
    </javac>
  </target>

  <!-- package all Java code into a JAR file -->
  <target name="jar" depends="compile" description="generate the jarfile">
    <!-- Create the distribution directory -->
    <mkdir dir="${dist}" />

    <!-- Put everything in ${build} into the jar file -->
    <jar jarfile="${dist}/${ant.project.name}.jar" manifest="META-INF/MANIFEST.MF">
      <fileset dir="${build}">
        <!--
			Include all the application classes, but
			don't include the test classes.
		-->
        <include name="**/*.class" />
        <exclude name="**/*Test.class" />
      </fileset>
    </jar>
  </target>

  <target name="test" depends="compile" description="run the unit tests">
    <mkdir dir="${reports}" />
    <mkdir dir="${reports.junit}" />
    <mkdir dir="${reports.junit.xml}" />

    <junit fork="true" forkmode="once" dir="${basedir}" failureProperty="test.failed">
      <classpath location="${build}" />
      <classpath refid="classpath" />

      <formatter type="xml" />
      <batchtest todir="${reports.junit.xml}">
        <fileset dir="${test}">
          <include name="**/*Test.java" />
          <exclude name="**/Abstract*Test.java" />
        </fileset>
      </batchtest>
    </junit>

    <junitreport todir="${reports.junit.xml}">
      <fileset dir="${reports.junit.xml}">
        <include name="TEST-*.xml" />
      </fileset>
      <report format="frames" todir="${reports.junit}" />
    </junitreport>
  </target>
  
  <target name="javadoc" description="generate javadocs">
    <mkdir dir="${docs}" />
    <javadoc destdir="${docs}">
	  <fileset dir="${src}" includes="**/*.java" />
	</javadoc>
  </target>

  <target name="clean" description="clean up">
    <delete dir="${build}" />
    <delete dir="${dist}"/>
    <delete dir="${reports}"/>
    <delete dir="${docs}"/>
  </target>
</project>