DESCRIPTION

Package: rutilstimflutre
Title: Timothee Flutre's personal R code
Version: 0.170.1
Authors@R: c(
    person("Timothee", "Flutre", email="timothee.flutre@inrae.fr", role=c("aut", "ctb", "cre"), comment=c(ORCID="0000-0003-4489-4782")),
    person("Peter", "Carbonetto", role="aut", comment="function from varbvs example"),
    person("Dalel", "Ahmed", role="ctb", comment="few functions during internship"),
    person("Xiaoquan", "Wen", role="aut", comment="function via collaboration"),
    person("Daniel", "Shriner", role="aut", comment="function from article"),
    person("Bertrand", "Servin", role="aut", comment="function from article"),
    person("Eric", "Duchene", role="aut", comment="functions to filter SNP genotypes"),
    person("Gautier", "Sarah", role="aut", comment="functions to reformat SNP genotypes"),
    person("Agnes", "Doligez", role="ctb", comment="help on joinMap2backcross() and MIMQTL()"),
    person("Gota", "Morota", email="morota@unl.edu", role="ctb", comment="variance components estimation"),
    person("Julien", "Diot", email="juliendiot42@gmail.com", role="ctb", comment="subset a pedigree"),
    person("Charlotte", "Brault", email="charlotte.brault@inrae.fr", role="ctb", comment="JoinMap segregation types, SIMQTL(), MIMQTL()"),
    person("Jon", "White", email="jon.white@niab.com", role="ctb", comment="power analysis for GWAS")
    )
Description: Timothee Flutre's personal R package (+ parts from other contributors).
Depends:
    R (>= 3.2.0),
    data.table,
    lme4,
    Matrix,
    methods,
    Rcpp,
    stats
License: GPL-3 | AGPL-3
Copyright: INRAE
URL: https://github.com/timflutre/rutilstimflutre
BugReports: https://github.com/timflutre/rutilstimflutre/issues
Suggests:
    BiocGenerics,
    Biostrings,
    BGLR,
    BLR,
    boot,
    caret,
    coda,
    DBI,
    digest,
    GenomeInfoDb,
    GenomicRanges,
    ggbio,
    ggplot2,
    graphics,
    grDevices,
    gstat,
    gtools,
    igraph,
    INLA,
    IRanges,
    knitr,
    lattice,
    LDcorSV,
    lmerTest,
    loo,
    MASS,
    MuMIn,
    nlme,
    pdftools,
    qtl,
    QTLRel,
    qvalue,
    rjags,
    rgs3,
    rmarkdown,
    rrBLUP,
    Rsamtools,
    RSpectra,
    rstan,
    RSQLite,
    S4Vectors,
    scrm,
    SNPRelate,
    snpStats,
    sp,
    sparseMVN,
    SummarizedExperiment,
    testthat,
    utils,
    varbvs,
    VariantAnnotation
RoxygenNote: 7.3.1
Encoding: UTF-8
VignetteBuilder: knitr