env.yaml

name: covmark
channels:
  - defaults
  - conda-forge
  - bioconda
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=1_gnu
  - bamtocov=2.5.0=h38613fd_1
  - bamtools=2.5.1=h9a82719_9
  - bedtools=2.30.0=h7d7f7ad_2
  - bzip2=1.0.8=h7f98852_4
  - c-ares=1.18.1=h7f98852_0
  - ca-certificates=2021.10.8=ha878542_0
  - covtobed=1.3.5=h36a6f06_0
  - curl=7.81.0=h2574ce0_0
  - htslib=1.14=h5138463_1
  - hyperfine=1.12.0=habb4d0f_0
  - krb5=1.19.2=hcc1bbae_3
  - ld_impl_linux-64=2.36.1=hea4e1c9_2
  - libbigwig=0.4.6=h1b8c3c0_1
  - libcurl=7.81.0=h2574ce0_0
  - libdeflate=1.9=h7f98852_0
  - libedit=3.1.20191231=he28a2e2_2
  - libev=4.33=h516909a_1
  - libffi=3.4.2=h7f98852_5
  - libgcc-ng=11.2.0=h1d223b6_12
  - libgomp=11.2.0=h1d223b6_12
  - libnghttp2=1.46.0=h812cca2_0
  - libnsl=2.0.0=h7f98852_0
  - libssh2=1.10.0=ha56f1ee_2
  - libstdcxx-ng=11.2.0=he4da1e4_12
  - libuuid=2.32.1=h14c3975_1000
  - libzlib=1.2.11=h36c2ea0_1013
  - megadepth=1.1.3=h00214ad_1
  - mosdepth=0.3.3=hdfd78af_1
  - ncurses=6.2=h58526e2_4
  - openssl=1.1.1l=h7f98852_0
  - pcre=8.45=h9c3ff4c_0
  - python=3.10.2=h62f1059_0_cpython
  - python_abi=3.10=2_cp310
  - readline=8.1=h46c0cb4_0
  - samtools=1.14=hb421002_0
  - sqlite=3.37.0=h9cd32fc_0
  - tk=8.6.11=h27826a3_1
  - tomli=2.0.0=pyhd8ed1ab_1
  - tzdata=2021e=he74cb21_0
  - xz=5.2.5=h516909a_1
  - zlib=1.2.11=h36c2ea0_1013
  - pip:
    - coverage==6.3.1
prefix: /local/miniconda3/envs/covmark