- none
- Very minor fix - just change pyspeckit.__doc__
- Virtually nothing, just compatibility stuff
- Compatibility #287: fix for mpl3
- Minor #283: fix incorrect use of _traceback variable in fiteach
- Enhancement #282: Allow instantiation from things with .hdus
- Enhancement #267: Improved NH3 fit defaults
- Bugfix #266: Fix an ammonia normalization issue
- Enhancement #257: Implement multi-component guessing for non-gaussian models
- Enhancement #256: New NH3 model
- Bugfix #249: Fix includemask initialization
- Bugfix #248: Prevent zero-width interactive guesses
- Bugfix #245: Corrections to powerlaw baseline fitting
- Bugfix #244: Fix typo in array arithmetic
- Bugfix #233: Fix problem retrieving multicomponent NH3 models
- Minor #210, #212: add cold_ammonia to the registry
- Bugfix #175: Fixed an error when indexing dxarr
- Minor #178: error message typo fixed
- Bugfix #159: Cube fitting was incorrectly ignoring some pixels. Fixed.
- Bugfix #176: Force fits to operate on float64s because float32s were giving gnorm=0 errors.
- Minor #180: In cube fitting, default to Integral=False
- Bugfix #135: Clear fits from plots each time a new one is made to avoid a memory leak
- Bugfix #183: Fix the usage of the reference value in doppler convention equivalency creation in line_ids
- Bugfix #185: Prevent divide-by-zero error in renormalization
- Minor #188,#189,#197,#200: Some py3 compatibility updates (especially for CLASS)
- Minor #186,#191,#192,#195: fix links, badges
- Bugfix #194: fix an infinite loop bug in cube init
- Bugfix #182: fix cube copying
- Enhancement #196: updated cube tests
- Bugfix #202: Fix filling fraction definition
- Docs #203: Add contributors section
- Bugfix #205: Make a figure if no figure exists
- Bugfix #207: clobber->overwrite to handle upstream astropy changes
- Bugfix #206: Fix units in
hydrogen.find_lines- Bugfix #209: have to index with integers in numpy >= 1.12
- Bugfix #211,#214: Fix rescaling for multi-component fits
- Bugfix #215: some text restructuring and fixes for default font sizes in matplotlib 2.0. An improved error message when units are pixels. Some bug fixes related to 'reset' in fitting. Documentation for hill5
- Bugfix #216: len(pars) division for python 3 fixed in ammonia code
- Bugfix #218,#219: fix return parsing of parallelized fits
- Enhancement #217: Parallelize get_modelcube
- Bugfix #223: fix lmfit parameter issue
- Enhancement #170: Added a
cold_ammoniamodel, which uses a specific set of approximations to fit the rotational temperature and retrieve the kinetic temperature- Bugfix #166: Spectrum objects should, and now do, inherit the registry from their parents. This is critical for fitting non-default models to cubes
- Bugfix #163: Allow parameter cubes that have NaNs to be loaded
- Enhancement #161: Cleaned up moment-specified guesses for cubes
- Enhancement #160: Added multiply ionized RRLs to the RRL models
- Enhancement #156: NaN pixels are treated as though they were masked out (previously, numpy masked arrays had to be used for this functionality)
- Bugfix #154: pyspeckit script upgraded to py3 compatible
- Bugfix #152: SpectroscopicAxis comparisons did not properly yield booleans due to an inheritance error.
- Bugfix #147: Spectrum arithmetic was being allowed between spectrum objects with different X-axes. This has been disallowed, and a test has been added.
- Enhancement #147:
from_spectrum1dimplemented to instantiate apyspeckit.Spectrumfrom aspecutils.Spectrum1Dobject- Bugfix #128: fiteach would try to measure an integral even if the spectral fit failed
- MAJOR bugfix #136: There was an error in the equation used to create the Ammonia model that would result in fits reporting incorrect values of the column density. The Ammonia model has been substantially refactored, removing the
thinoption in favor of putting the thin approximation into its own function.
- MAJOR bugfix #125: Discovered a major issue introduced in #122 in which a typo in the radiative transfer equation results in an incorrect model
Major change: this is the first version of pyspeckit fully compatible with python3.
- Bugfixes: #92, #93 related to fiteach, parameter validation, spectroscopic axis array handling, in_range checks, and the ammonia fit and plot wrapper. Also includes an update to the versioning scheme such that dev versions (like 0.1.18.dev) will include a git devstring when possible.
- Bugfix #91: Offset of 0.13 km/s between ammonia frequency used and that in the LOVAS catalog
- Bugfix #90: Allow fitting of multiple peaks interactively (again)
- Enhancement #89: Allow data to be passed to Spectrum as a quantity
- Bugfix #88: line_ids needed to handle quantities
- Enhancement #85: Remove hard-coded T_A* label
- Bugfix #82: Fix a loophole in which parameters were not checked for being in bounds when passed as guesses
- Addition #99: fiteach example with NIR data cubes, specfit example using user-created model, and a guide to installing pyspeckit via GitHub.
- Enhancement #100: Display EQW highlighting at appropriate location
- Addition #102: New N2D+ model
- Bugfix #105: Ammonia thin works (though it is still not recommended)
- Bugfix #106: Baselines were dependent on the X-axis coordinate unit.
- Enhancement #108, 110, 111, 112: Python 3 compatibility
- Bugfix #113: Improved plotting & robustness of measure_fwhm, especially when baseline is not subtracted
- Bugfix #115: py3ify steppify
- Enhancement #117/#119: Better error messages when using
SpectralCube.load_modeland more robust figure (re-)opening (if you closed a figure created by spectral cube and then tried to plot again, it would result in a crash. This behavior was never supported, so it is not a bugfix, but now the behavior should work)- Bugfix #118: Re-fitting within a given window sometimes failed, possibly due to how matplotlib handles event handlers. Refactoring should make this much more robust.
- Enhancement #120: astropy-helpers + travis-ci related infrastructure update
- Bugfix #121: Use correct variable name in N2D+ degeneracy
- Bugfix #122: Informative errors on file reading & exact RT equation in
hyperfinemodel- Addition #124: LTE model
- Bugfixes: #67, #69, #71, #74, #75 related to fiteach
- Bugfix for error bar plotting (PR #76, issue #78)
- Documentation cleanup and enhancement (#77)
- Major refactor: use astropy's Quantity and units to replace pyspeckit's minimalist unit framework. You may see deprecation warnings as a result! (pyspeckit#26)
- The refactor led to many subsequent bugfixes: #61, #55, #51, and others
- Removal of the peakbgfit default method: instead, the default is to treat all fits as multifits. Changes came from #32, #25
- New ammonia models (#28, #50): absorption against a background source and treating each line independently without a temperature connecting them
- Bugfix: write_fit is part of Cube, not CubeStack
- Bugfix: excludefit must occur after selectregion if fit_plotted_area is True
- API change: For the fitter & baseliner, data selection is end-inclusive
- if specified in world coordinates
- Bugfix: numpy 1.8 added a "writeable" flag that broke units; that is now
- corrected http://docs.scipy.org/doc/numpy/reference/generated/numpy.ndarray.flags.html
- Baseline: add a fit method that is independent from button2action to make masking and fitting independent processes
- Added astropy as a dependency
- Converted to astropy-helper template for setup
- Changed 'units' -> 'unit' in Spectrum
- Baseline: add spline fitting
- Add Zenodo badge
- Allow parinfo to be used in place of guesses in specfit
- Bugfix: integral(direct=True) double-subtracted the baseline if it was
- already subtracted
- New Feature: Models now include analytic integrals (only implemented for
- Gaussian so far)
- New Feature: hyperfine models added that allow varying amplitudes & widths
- Cleanup excess data files
- Bugfixes in baseline fitting
- Added astropy.models interface
- New formaldehyde 218 GHz fitter
- Allow parinfo to be input as "guess=" or "parinfo="
- bugfix to EQW non-fitted ("empirical")
- bugfix: unit conversion with reference wavelength
- bugfix: interactive buttons "reconnected" each time
- new feature: voigt profile interactive guess now has 2 widths
- Added lineid_plot tools
- Baseline can fit power laws
- New TSPEC unmerged, IRAF fits readers
- astropy.io.fits compatibility fixes
- General bugfixes
- Voigt Profile Fitter - bugfix, previously abused notation / misused widths
- BUGFIX RELEASE
- Documentation updates
- Speed boost for model grids
- Some support for pymodelfit
- added emcee and pymc generators
- Added cross-correlation
- Added (some) unit tests
- New interactive slider widget for manipulating models (Spectrum.specfit.add_sliders())
- Subtle but very significant bug-fix: parinfo is now a single uniform list, based on the ParinfoList class.
- You can now fit based on what you see by using the 'use_window_limits=True' kwarg .. warning:: This changes the default behavior in interactive mode!
- lmfit-py can now be used for fitting via the 'use_lmfit' kwarg
- BUGFIX: SpectroscopicAxis can be converted between units even when scalar
- velocity frames are read from FITS headers following the VELDEF conventions
- H2CO fit / plot wrapper
- bugfixes
- setup.py no longer tries to write config files
- Added GBT (GBTIDL SDFITS file) and ALFALFA (ALFALFA idlsave .src) readers
- added extinction model (just a function, not a complete model yet)
- removed setuptools & distribute (they fail)
- added hydrogen.py to models
- first release to inherit from astropy's Spectrum1D
- some internal cleanup / refactoring
- override slicing (__getitem__ features)
- parallel moment & fitting in Cubes repaired
- added MIT license, moved mpfit and parallel_map inside pyspeckit as
- submodules
- bugfixes and versioning work
- Initial creation