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Parasim is a tool for robustness analysis. Given a SBML model, a property and perturbation set, it computes the robustness of model over the perturbation set with respect to the property. Perturbation set consists of intervals over model parameters and initial variable values. Properties are entered in the form of signal temporal logic formulae.

For more information about principles behind this tool see Bibliography.

Acknowledgement

Parasim was developed as a part of ongoing research at Systems Biology Laboratory at Faculty of Informatics Masaryk University.

Throughout 2012, the development was supported by Program for Support of Student Research and Development Projects (in Czech) also at Faculty of Informatics, which has in no small part contributed to the first parasim stable release as well as creation of this wiki.

[](http://www.fi.muni.cz) [](http://sybila.fi.muni.cz)

Downloads

Version	Changelog	Downloads
2.0.0.M1	[changelog] (https://github.com/sybila/parasim/issues?milestone=8&state=closed)	[Parasim] (http://repository-sybila.forge.cloudbees.com/release/org/sybila/parasim/application/parasim/2.0.0.M1/parasim-2.0.0.M1-dist.jar)
1.0.0.Final	[changelog] (https://github.com/sybila/parasim/issues?milestone=3&page=1&state=closed)	[Parasim CLI] (http://repository-sybila.forge.cloudbees.com/release/org/sybila/parasim/application/parasim-cli/1.0.0.Final/parasim-cli-1.0.0.Final-dist.jar), [Parasim GUI] (http://repository-sybila.forge.cloudbees.com/release/org/sybila/parasim/application/parasim-gui/1.0.0.Final/parasim-gui-1.0.0.Final-dist.jar)
1.0.0.M4	[changelog] (https://github.com/sybila/parasim/issues?milestone=6&page=1&state=closed)	[Parasim CLI] (http://repository-sybila.forge.cloudbees.com/release/org/sybila/parasim/application/parasim-cli/1.0.0.M4/parasim-cli-1.0.0.M4-dist.jar), [Parasim GUI] (http://repository-sybila.forge.cloudbees.com/release/org/sybila/parasim/application/parasim-gui/1.0.0.M4/parasim-gui-1.0.0.M4-dist.jar)
1.0.0.M3	[changelog] (https://github.com/sybila/parasim/issues?milestone=2&page=1&state=closed)	[Parasim CLI] (http://repository-sybila.forge.cloudbees.com/release/org/sybila/parasim/application/parasim-cli/1.0.0.M3/parasim-cli-1.0.0.M3-dist.jar)

For Users

• Use parasim GUI
• Learn to use parasim GUI
• Browse analysis results using projection plotter

Advanced Topics

• Execute parasim from command line
• Experiment file format
• Project naming and placement conventions
• Build parasim from source

For Developers

• Sybila repository
• Build your own extension
• XML Import and Export
• Extensions