-
Notifications
You must be signed in to change notification settings - Fork 54
/
spm.m
1263 lines (1123 loc) · 45.5 KB
/
spm.m
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
function varargout=spm(varargin)
% SPM: Statistical Parametric Mapping (startup function)
%_______________________________________________________________________
% ___ ____ __ __
% / __)( _ \( \/ )
% \__ \ )___/ ) ( Statistical Parametric Mapping
% (___/(__) (_/\/\_) SPM - https://www.fil.ion.ucl.ac.uk/spm/
%_______________________________________________________________________
%
% SPM (Statistical Parametric Mapping) is a package for the analysis
% functional brain mapping experiments. It is the in-house package of
% the Wellcome Centre for Human Neuroimaging, and is available to the
% scientific community as copyright freeware under the terms of the
% GNU General Public Licence.
%
% Theoretical, computational and other details of the package are
% available in SPM's "Help" facility. This can be launched from the
% main SPM Menu window using the "Help" button, or directly from the
% command line using the command `spm_help`.
%
% Details of this release are available via the "About SPM" help topic
% accessible from the SPM splash screen. See also README.md.
%
% This spm function initialises the default parameters, and displays a
% splash screen with buttons leading to the PET, fMRI and M/EEG
% modalities. Alternatively, `spm('pet')`, `spm('fmri')`, `spm('eeg')`
% (equivalently `spm pet`, `spm fmri` and `spm eeg`) lead directly to
% the respective modality interfaces.
%
% Once the modality is chosen, (and it can be toggled mid-session) the
% SPM user interface is displayed. This provides a constant visual
% environment in which data analysis is implemented. The layout has
% been designed to be simple and at the same time show all the
% facilities that are available. The interface consists of three
% windows: A menu window with pushbuttons for the SPM routines (each
% button has a 'CallBack' string which launches the appropriate
% function/script); A blank panel used for interaction with the user;
% And a graphics figure with various editing and print facilities (see
% spm_figure.m). (These windows are 'Tag'ged 'Menu', 'Interactive', and
% 'Graphics' respectively, and should be referred to by their tags
% rather than their figure numbers.)
%
% Further interaction with the user is (mainly) via questioning in the
% 'Interactive' window (managed by spm_input), and file selection
% (managed by spm_select). See the help on spm_input.m and spm_select.m for
% details on using these functions.
%
% Arguments to this routine (spm.m) lead to various setup facilities,
% mainly of use to SPM power users and programmers. See programmers
% FORMAT & help in the main body of spm.m
%
%_______________________________________________________________________
% Copyright (C) 1991,1994-2019 Wellcome Trust Centre for Neuroimaging
% Andrew Holmes
% $Id: spm.m 7606 2019-06-06 10:52:30Z guillaume $
%=======================================================================
% - FORMAT specifications for embedded CallBack functions
%=======================================================================
%( This is a multi function function, the first argument is an action )
%( string, specifying the particular action function to take. Recall )
%( MATLAB's command-function duality: `spm Welcome` is equivalent to )
%( `spm('Welcome')`. )
%
% FORMAT spm
% Defaults to spm('Welcome')
%
% FORMAT spm('Welcome')
% Clears command window, deletes all figures, prints welcome banner and
% splash screen, sets window defaults.
%
% FORMAT spm('AsciiWelcome')
% Prints ASCII welcome banner in MATLAB command window.
%
% FORMAT spm('PET') spm('FMRI') spm('EEG')
% Closes all windows and draws new Menu, Interactive, and Graphics
% windows for an SPM session. The buttons in the Menu window launch the
% main analysis routines.
%
% FORMAT spm('ChMod',Modality)
% Changes modality of SPM: Currently SPM supports PET & MRI modalities,
% each of which have a slightly different Menu window and different
% defaults. This function switches to the specified modality, setting
% defaults and displaying the relevant buttons.
%
% FORMAT spm('defaults',Modality)
% Sets default global variables for the specified modality.
%
% FORMAT [Modality,ModNum]=spm('CheckModality',Modality)
% Checks the specified modality against those supported, returns
% upper(Modality) and the Modality number, it's position in the list of
% supported Modalities.
%
% FORMAT Fmenu = spm('CreateMenuWin',Vis)
% Creates SPM menu window, 'Tag'ged 'Menu'
% F - handle of figure created
% Vis - Visibility, 'on' or 'off'
%
% Finter = FORMAT spm('CreateIntWin',Vis)
% Creates an SPM Interactive window, 'Tag'ged 'Interactive'
% F - handle of figure created
% Vis - Visibility, 'on' or 'off'
%
% FORMAT [Finter,Fgraph,CmdLine] = spm('FnUIsetup',Iname,bGX,CmdLine)
% Robust UIsetup procedure for functions:
% Returns handles of 'Interactive' and 'Graphics' figures.
% Creates 'Interactive' figure if ~CmdLine, creates 'Graphics' figure if bGX.
% Iname - Name for 'Interactive' window
% bGX - Need a Graphics window? [default 1]
% CmdLine - CommandLine usage? [default spm('CmdLine')]
% Finter - handle of 'Interactive' figure
% Fgraph - handle of 'Graphics' figure
% CmdLine - CommandLine usage?
%
% FORMAT WS=spm('WinScale')
% Returns ratios of current display dimensions to that of a 1152 x 900
% Sun display. WS=[Xratio,Yratio,Xratio,Yratio]. Used for scaling other
% GUI elements.
% (Function duplicated in spm_figure.m, repeated to reduce inter-dependencies.)
%
% FORMAT [FS,sf] = spm('FontSize',FS)
% FORMAT [FS,sf] = spm('FontSizes',FS)
% Returns fontsizes FS scaled for the current display.
% FORMAT sf = spm('FontScale')
% Returns font scaling factor
% FS - (vector of) Font sizes to scale [default [1:36]]
% sf - font scaling factor (FS(out) = floor(FS(in)*sf)
%
% Rect = spm('WinSize',Win,raw)
% Returns sizes and positions for SPM windows.
% Win - 'Menu', 'Interactive', 'Graphics', or '0'
% - Window whose position is required. Only first character is
% examined. '0' returns size of root workspace.
% raw - If specified, then positions are for a 1152 x 900 Sun display.
% Otherwise the positions are scaled for the current display.
%
% FORMAT [c,cName] = spm('Colour')
% Returns the RGB triple and a description for the current en-vogue SPM
% colour, the background colour for the Menu and Help windows.
%
% FORMAT F = spm('FigName',Iname,F,CmdLine)
% Set name of figure F to "SPMver (User): Iname" if ~CmdLine
% Robust to absence of figure.
% Iname - Name for figure
% F (input) - Handle (or 'Tag') of figure to name [default 'Interactive']
% CmdLine - CommandLine usage? [default spm('CmdLine')]
% F (output) - Handle of figure named
%
% FORMAT Fs = spm('Show')
% Opens all SPM figure windows (with HandleVisibility) using `figure`.
% Maintains current figure.
% Fs - vector containing all HandleVisible figures (i.e. get(0,'Children'))
%
% FORMAT spm('Clear',Finter, Fgraph)
% Clears and resets SPM-GUI, clears and timestamps MATLAB command window.
% Finter - handle or 'Tag' of 'Interactive' figure [default 'Interactive']
% Fgraph - handle or 'Tag' of 'Graphics' figure [default 'Graphics']
%
% FORMAT SPMid = spm('FnBanner', Fn,FnV)
% Prints a function start banner, for version FnV of function Fn, & datestamps
% FORMAT SPMid = spm('SFnBanner',Fn,FnV)
% Prints a sub-function start banner
% FORMAT SPMid = spm('SSFnBanner',Fn,FnV)
% Prints a sub-sub-function start banner
% Fn - Function name (string)
% FnV - Function version (string)
% SPMid - ID string: [SPMver: Fn (FnV)]
%
% FORMAT SPMdir = spm('Dir',Mfile)
% Returns the directory containing the version of spm in use,
% identified as the first in MATLABPATH containing the Mfile spm (this
% file) (or Mfile if specified).
%
% FORMAT [v,r] = spm('Ver',Mfile,ReDo)
% Returns the current version (v) and release (r) of file Mfile. This
% corresponds to the Last changed Revision number extracted from the
% Subversion Id tag.
% If Mfile is absent or empty then it returns the current SPM version (v)
% and release (r), extracted from the file Contents.m in the SPM directory
% (these information are cached in a persistent variable to enable repeat
% use without recomputation).
% If Redo [default false] is true, then the cached current SPM information
% are not used but recomputed (and recached).
%
% FORMAT ver = spm('Version')
% Returns a string containing SPM version and release numbers.
%
% FORMAT xTB = spm('TBs')
% Identifies installed SPM toolboxes: SPM toolboxes are defined as the
% contents of sub-directories of fullfile(spm('Dir'),'toolbox') - the
% SPM toolbox installation directory. For SPM to pick a toolbox up,
% there must be a single mfile in the directory whose name ends with
% the toolbox directory name. (I.e. A toolbox called "test" would be in
% the "test" subdirectory of spm('Dir'), with a single file named
% *test.m.) This M-file is regarded as the launch file for the
% toolbox.
% xTB - structure array containing toolbox definitions
% xTB.name - name of toolbox (taken as toolbox directory name)
% xTB.prog - launch program for toolbox
% xTB.dir - toolbox directory
%
% FORMAT spm('TBlaunch',xTB,i)
% Launch a toolbox, prepending TBdir to path if necessary
% xTB - toolbox definition structure (i.e. from spm('TBs')
% xTB.name - name of toolbox
% xTB.prog - name of program to launch toolbox
% xTB.dir - toolbox directory (prepended to path if not on path)
%
% FORMAT [v1,v2,...] = spm('GetGlobal',name1,name2,...)
% Returns values of global variables (without declaring them global)
% name1, name2,... - name strings of desired globals
% a1, a2,... - corresponding values of global variables with given names
% ([] is returned as value if global variable doesn't exist)
%
% FORMAT CmdLine = spm('CmdLine',CmdLine)
% Command line SPM usage?
% CmdLine (input) - CmdLine preference
% [defaults (missing or empty) to global defaults.cmdline,]
% [if it exists, or 0 (GUI) otherwise. ]
% CmdLine (output) - true if global CmdLine if true,
% or if on a terminal with no support for graphics windows.
%
% FORMAT spm('PopUpCB',h)
% Callback handler for PopUp UI menus with multiple callbacks as cellstr UserData
%
% FORMAT str = spm('GetUser',fmt)
% Returns current users login name, extracted from the hosting environment
% fmt - format string: If USER is defined then sprintf(fmt,USER) is returned
%
% FORMAT spm('Beep')
% Plays the keyboard beep!
%
% FORMAT spm('time')
% Returns the current time and date as hh:mm dd/mm/yyyy
%
% FORMAT spm('Pointer',Pointer)
% Changes pointer on all SPM (HandleVisible) windows to type Pointer
% Pointer defaults to 'Arrow'. Robust to absence of windows
%
% FORMAT h = spm('alert',Message,Title,CmdLine,wait)
% FORMAT h = spm('alert"',Message,Title,CmdLine,wait)
% FORMAT h = spm('alert*',Message,Title,CmdLine,wait)
% FORMAT h = spm('alert!',Message,Title,CmdLine,wait)
% Displays an alert, either in a GUI msgbox, or as text in the command window.
% ( 'alert"' uses the 'help' msgbox icon, 'alert*' the )
% ( 'error' icon, 'alert!' the 'warn' icon )
% Message - string (or cellstr) containing message to print
% Title - title string for alert
% CmdLine - CmdLine preference [default spm('CmdLine')]
% - If CmdLine is complex, then a CmdLine alert is always used,
% possibly in addition to a msgbox (the latter according
% to spm('CmdLine').)
% wait - if true, waits until user dismisses GUI / confirms text alert
% [default 0] (if doing both GUI & text, waits on GUI alert)
% h - handle of msgbox created, empty if CmdLine used
%
% FORMAT spm('Delete',file)
% Delete file(s), using spm_select and confirmation dialogs.
%
% FORMAT spm('Run',mscript)
% Run M-script(s), using spm_select.
%
% FORMAT spm('Clean')
% Clear all variables, globals, functions, MEX links and class definitions.
%
% FORMAT spm('Help',varargin)
% Merely a gateway to spm_help(varargin) - so you can type "spm help"
%
% FORMAT spm('Quit')
% Quit SPM, delete all windows and clear the command window.
%
%_______________________________________________________________________
%-Parameters
%-----------------------------------------------------------------------
Modalities = {'PET','FMRI','EEG'};
%-Format arguments
%-----------------------------------------------------------------------
if nargin == 0, Action = 'Welcome'; else Action = varargin{1}; end
%=======================================================================
switch lower(Action), case 'welcome' %-Welcome splash screen
%=======================================================================
% spm('Welcome')
spm_check_installation('basic');
defaults = spm('GetGlobal','defaults');
if isfield(defaults,'modality')
spm(defaults.modality);
return
end
%-Open welcome splash screen
%-----------------------------------------------------------------------
spm_Welcome;
%=======================================================================
case 'asciiwelcome' %-ASCII SPM banner welcome
%=======================================================================
% spm('AsciiWelcome')
disp( ' ___ ____ __ __ ');
disp( '/ __)( _ \( \/ ) ');
disp( '\__ \ )___/ ) ( Statistical Parametric Mapping ');
disp(['(___/(__) (_/\/\_) ',spm('Ver'),' - https://www.fil.ion.ucl.ac.uk/spm/']);
fprintf('\n');
%=======================================================================
case lower(Modalities) %-Initialise SPM in PET, fMRI, EEG modality
%=======================================================================
% spm(Modality)
spm_check_installation('basic');
%-Initialisation and workspace canonicalisation
%-----------------------------------------------------------------------
local_clc;
spm('AsciiWelcome');
[SPMver, SPMrev] = spm('Ver');
spm('FnBanner', ['v' SPMrev]);
fprintf('%-40s: %18s', 'Initialising SPM', '');
Modality = upper(Action);
spm_figure('close',allchild(0)); fprintf('.');
%-Load startup global defaults
%-----------------------------------------------------------------------
spm_defaults; fprintf('.');
%-Setup for batch system
%-----------------------------------------------------------------------
spm_jobman('initcfg'); fprintf('.');
%-Draw SPM windows
%-----------------------------------------------------------------------
if ~spm('CmdLine')
Fmenu = spm('CreateMenuWin','off'); fprintf('.');
Finter = spm('CreateIntWin','off'); fprintf('.');
else
Fmenu = [];
Finter = [];
end
Fgraph = spm_figure('Create','Graphics','Graphics','off'); fprintf('.');
spm_figure('WaterMark',Finter,spm('Ver'),'',45);
url = fullfile(spm('Dir'),'help','index.html');
%url = fullfile(spm('Dir'),'README.md');
spm_help('!Disp',url,'',Fgraph); fprintf('.');
%-Setup for current modality
%-----------------------------------------------------------------------
spm('ChMod',Modality); fprintf('.');
%-Reveal windows
%-----------------------------------------------------------------------
set([Fmenu,Finter,Fgraph],'Visible','on'); fprintf('done\n\n');
%-Print present working directory
%-----------------------------------------------------------------------
fprintf('SPM present working directory:\n\t%s\n',pwd)
%=======================================================================
case 'chmod' %-Change SPM modality PET<->fMRI<->EEG
%=======================================================================
% spm('ChMod',Modality)
%-----------------------------------------------------------------------
%-Sort out arguments
%-----------------------------------------------------------------------
if nargin<2, Modality = ''; else Modality = varargin{2}; end
Modality = spm('CheckModality',Modality);
%-Sort out global defaults
%-----------------------------------------------------------------------
spm('defaults',Modality);
%-Sort out visibility of appropriate controls on Menu window
%-----------------------------------------------------------------------
spm_Menu('Switch',Modality);
%=======================================================================
case 'defaults' %-Set SPM defaults (as global variable)
%=======================================================================
% spm('defaults',Modality)
%-----------------------------------------------------------------------
if nargin<2, Modality=''; else Modality=varargin{2}; end
Modality = spm('CheckModality',Modality);
%-Re-initialise, load defaults (from spm_defaults.m) and store modality
%-----------------------------------------------------------------------
clear global defaults
spm_get_defaults('modality',Modality);
%-Addpath (modality-specific) toolboxes
%-----------------------------------------------------------------------
if ~isdeployed
ws = warning('off','MATLAB:mpath:nameNonexistentOrNotADirectory');
addpath(fullfile(spm('Dir'),'toolbox','DEM'));
warning(ws);
end
if strcmpi(Modality,'EEG')
if exist(fullfile(spm('Dir'),'external','fieldtrip'),'dir') ~= 7
warning('FieldTrip not available: some features will be missing.');
else
if ~isdeployed
addpath(fullfile(spm('Dir'),'external','fieldtrip'));
end
clear ft_defaults
clear global ft_default
global ft_default
ft_default.trackcallinfo = 'no';
ft_default.showcallinfo = 'no';
ft_default.trackusage = 'no';
ft_defaults;
ft_default.trackcallinfo = 'no';
ft_default.showcallinfo = 'no';
ft_default.trackusage = 'no';
ft_warning('off','backtrace');
end
if ~isdeployed
ws = warning('off','MATLAB:mpath:nameNonexistentOrNotADirectory');
addpath(...
fullfile(spm('Dir'),'external','bemcp'),...
fullfile(spm('Dir'),'external','ctf'),...
fullfile(spm('Dir'),'external','eeprobe'),...
fullfile(spm('Dir'),'external','mne'),...
fullfile(spm('Dir'),'external','yokogawa_meg_reader'),...
fullfile(spm('Dir'),'external','ricoh_meg_reader'),...
fullfile(spm('Dir'),'toolbox', 'dcm_meeg'),...
fullfile(spm('Dir'),'toolbox', 'spectral'),...
fullfile(spm('Dir'),'toolbox', 'Neural_Models'),...
fullfile(spm('Dir'),'toolbox', 'MEEGtools'));
warning(ws);
end
end
%-Turn output pagination off in Octave
%-----------------------------------------------------------------------
if strcmpi(spm_check_version,'octave')
try
more('off');
page_screen_output(false);
page_output_immediately(true);
end
end
%-Return defaults variable if asked
%-----------------------------------------------------------------------
if nargout, varargout = {spm_get_defaults}; end
%=======================================================================
case 'checkmodality' %-Check & canonicalise modality string
%=======================================================================
% [Modality,ModNum] = spm('CheckModality',Modality)
%-----------------------------------------------------------------------
if nargin<2, Modality=''; else Modality=upper(varargin{2}); end
if isempty(Modality)
try
Modality = spm_get_defaults('modality');
end
end
if ischar(Modality)
ModNum = find(ismember(Modalities,Modality));
else
if ~any(Modality == 1:length(Modalities))
Modality = 'ERROR';
ModNum = [];
else
ModNum = Modality;
Modality = Modalities{ModNum};
end
end
if isempty(ModNum)
if isempty(Modality)
fprintf('Modality is not set: use spm(''defaults'',''MOD''); ');
fprintf('where MOD is one of PET, FMRI, EEG.\n');
end
error('Unknown Modality.');
end
varargout = {upper(Modality),ModNum};
%=======================================================================
case 'createmenuwin' %-Create SPM menu window
%=======================================================================
% Fmenu = spm('CreateMenuWin',Vis)
%-----------------------------------------------------------------------
Fmenu = spm_Menu('Create',varargin{2:end});
varargout = {Fmenu};
%=======================================================================
case 'createintwin' %-Create SPM interactive window
%=======================================================================
% Finter = spm('CreateIntWin',Vis)
%-----------------------------------------------------------------------
if nargin<2, Vis='on'; else Vis=varargin{2}; end
%-Close any existing 'Interactive' 'Tag'ged windows
%-----------------------------------------------------------------------
delete(spm_figure('FindWin','Interactive'))
%-Create SPM Interactive window
%-----------------------------------------------------------------------
FS = spm('FontSizes');
PF = spm_platform('fonts');
S0 = spm('WinSize','0',1);
SI = spm('WinSize','I');
Finter = figure('IntegerHandle','off',...
'Tag','Interactive',...
'Name',spm('Version'),...
'NumberTitle','off',...
'Units','pixels',...
'Position',[S0(1) S0(2) 0 0] + SI,...
'Resize','on',...
'Color',[1 1 1]*.8,...
'MenuBar','none',...
'DefaultTextFontName',PF.helvetica,...
'DefaultTextFontSize',FS(10),...
'DefaultAxesFontName',PF.helvetica,...
'DefaultUicontrolBackgroundColor',[1 1 1]*.7,...
'DefaultUicontrolFontName',PF.helvetica,...
'DefaultUicontrolFontSize',FS(10),...
'DefaultUicontrolInterruptible','on',...
'Renderer','painters',...
'Visible',Vis);
if spm_check_version('matlab','8.3') < 0
set(Finter,'DoubleBuffer','on');
end
varargout = {Finter};
%=======================================================================
case 'fnuisetup' %-Robust UI setup for main SPM functions
%=======================================================================
% [Finter,Fgraph,CmdLine] = spm('FnUIsetup',Iname,bGX,CmdLine)
%-----------------------------------------------------------------------
if nargin<4, CmdLine=spm('CmdLine'); else CmdLine=varargin{4}; end
if nargin<3, bGX=1; else bGX=varargin{3}; end
if nargin<2, Iname=''; else Iname=varargin{2}; end
if CmdLine
Finter = spm_figure('FindWin','Interactive');
if ~isempty(Finter), spm_figure('Clear',Finter), end
%if ~isempty(Iname), fprintf('%s:\n',Iname), end
else
Finter = spm_figure('GetWin','Interactive');
spm_figure('Clear',Finter)
if ~isempty(Iname)
str = sprintf('%s: %s',spm('Version'),Iname);
else
str = '';
end
set(Finter,'Name',str)
end
if bGX
Fgraph = spm_figure('GetWin','Graphics');
spm_figure('Clear',Fgraph)
else
Fgraph = spm_figure('FindWin','Graphics');
end
varargout = {Finter,Fgraph,CmdLine};
%=======================================================================
case 'winscale' %-Window scale factors (to fit display)
%=======================================================================
% WS = spm('WinScale')
%-----------------------------------------------------------------------
S0 = spm('WinSize','0',1);
if all(ismember(S0(:),[0 1]))
varargout = {[1 1 1 1]};
return;
end
B = 50; % taskbar size
if ispc && isequal(S0,[1 1 1366 768])
B = 80;
elseif ismac
B = 110; % average size bottom Dock
end
tmp = [S0(3)/1152 (S0(4)-B)/900];
varargout = {min(tmp)*[1 1 1 1]};
% Make sure that aspect ratio is about right - for funny shaped screens
% varargout = {[S0(3)/1152 (S0(4)-B)/900 S0(3)/1152 (S0(4)-B)/900]};
%=======================================================================
case {'fontsize','fontsizes','fontscale'} %-Font scaling
%=======================================================================
% [FS,sf] = spm('FontSize',FS)
% [FS,sf] = spm('FontSizes',FS)
% sf = spm('FontScale')
%-----------------------------------------------------------------------
if nargin<2, FS=1:36; else FS=varargin{2}; end
offset = 1;
%try, if ismac, offset = 1.4; end; end
sf = offset + 0.85*(min(spm('WinScale'))-1);
if strcmpi(Action,'fontscale')
varargout = {sf};
else
varargout = {ceil(FS*sf),sf};
end
%=======================================================================
case 'winsize' %-Standard SPM window locations and sizes
%=======================================================================
% Rect = spm('WinSize',Win,raw)
%-----------------------------------------------------------------------
if nargin<3, raw=0; else raw=1; end
if nargin<2, Win=''; else Win=varargin{2}; end
Rect = [[108 466 400 445];...
[108 045 400 395];...
[515 015 600 865];...
[326 310 500 280]];
if isempty(Win)
%-All windows
elseif upper(Win(1))=='M'
%-Menu window
Rect = Rect(1,:);
elseif upper(Win(1))=='I'
%-Interactive window
Rect = Rect(2,:);
elseif upper(Win(1))=='G'
%-Graphics window
Rect = Rect(3,:);
elseif upper(Win(1))=='W'
%-Welcome window
Rect = Rect(4,:);
elseif Win(1)=='0'
units = get(0,'Units');
set(0,'Units','pixels');
%-Root workspace
if strcmpi(spm_check_version,'octave')
Rect = get(0, 'ScreenSize');
else
Rect = get(0, 'MonitorPositions');
end
if all(ismember(Rect(:),[0 1]))
warning('SPM:noDisplay','Unable to open display.');
end
if size(Rect,1) > 1 % Multiple Monitors
%-The MonitorPositions property depends on the architecture
if ~ispc || spm_check_version('matlab','8.4') >= 0
Rect(:,[3 4]) = Rect(:,[3 4]) + Rect(:,[1 2]);
end
monitor = spm_get_defaults('ui.monitor');
if isnan(monitor)
%-Use Monitor containing the Pointer
pl = get(0,'PointerLocation');
w = find(pl(1)>=Rect(:,1) & pl(1)<=Rect(:,3));
if numel(w) > 1, Rect = Rect(w,:); end
if numel(w)~=1
w = find(pl(2)>=Rect(:,2) & pl(2)<=Rect(:,4));
end
if numel(w)~=1
if ispc
w = size(Rect,1);
else
w = 1;
end
end
else
if ispc
w = size(Rect,1) - monitor + 1;
else
w = monitor;
end
end
Rect = Rect(w,:);
%-Make sure that the format is [x y width height]
Rect(1,[3 4]) = Rect(1,[3 4]) - Rect(1,[1 2]) + 1;
end
set(0,'Units',units);
else
error('Unknown Win type');
end
if ~raw
WS = repmat(spm('WinScale'),size(Rect,1),1);
Rect = Rect.*WS;
end
varargout = {Rect};
%=======================================================================
case 'colour' %-SPM interface colour
%=======================================================================
% spm('Colour')
%-----------------------------------------------------------------------
%-Pre-developmental livery
% varargout = {[1.0,0.2,0.3],'fightening red'};
%-Developmental livery
% varargout = {[0.7,1.0,0.7],'flourescent green'};
%-Alpha release livery
% varargout = {[0.9,0.9,0.5],'over-ripe banana'};
%-Beta release livery
% varargout = {[0.9 0.8 0.9],'blackcurrant purple'};
%-Distribution livery
varargout = {[0.8 0.8 1.0],'vile violet'};
try
varargout = {spm_get_defaults('ui.colour'),'bluish'};
end
%=======================================================================
case 'figname' %-Robust SPM figure naming
%=======================================================================
% F = spm('FigName',Iname,F,CmdLine)
%-----------------------------------------------------------------------
if nargin<4, CmdLine=spm('CmdLine'); else CmdLine=varargin{4}; end
if nargin<3, F='Interactive'; else F=varargin{3}; end
if nargin<2, Iname=''; else Iname=varargin{2}; end
if CmdLine, varargout={[]}; return, end
F = spm_figure('FindWin',F);
if isempty(Iname), Iname = get(F,'Tag'); end
if ~isempty(F) && ~isempty(Iname)
set(F,'Name',sprintf('%s: %s',spm('Version'),Iname))
end
varargout={F};
%=======================================================================
case 'show' %-Bring visible MATLAB windows to the fore
%=======================================================================
% Fs = spm('Show')
%-----------------------------------------------------------------------
cF = get(0,'CurrentFigure');
Fs = get(0,'Children');
Fs = findobj(Fs,'flat','Visible','on');
for F=Fs(:)', figure(F), end
try, figure(cF), set(0,'CurrentFigure',cF); end
varargout={Fs};
%=======================================================================
case 'clear' %-Clear SPM GUI
%=======================================================================
% spm('Clear',Finter, Fgraph)
%-----------------------------------------------------------------------
if nargin<3, Fgraph='Graphics'; else Fgraph=varargin{3}; end
if nargin<2, Finter='Interactive'; else Finter=varargin{2}; end
spm_figure('Clear',Fgraph)
spm_figure('Clear',Finter)
spm('Pointer','Arrow')
spm_conman('Initialise','reset');
local_clc;
fprintf('\n');
%evalin('base','clear')
%=======================================================================
case {'fnbanner','sfnbanner','ssfnbanner'} %-Text banners for functions
%=======================================================================
% SPMid = spm('FnBanner', Fn,FnV)
% SPMid = spm('SFnBanner',Fn,FnV)
% SPMid = spm('SSFnBanner',Fn,FnV)
%-----------------------------------------------------------------------
time = spm('time');
str = spm('Ver');
if nargin>=2, str = [str,': ',varargin{2}]; end
if nargin>=3
v = regexp(varargin{3},'\$Rev: (\d*) \$','tokens','once');
if ~isempty(v)
str = [str,' (v',v{1},')'];
else
str = [str,' (v',varargin{3},')'];
end
end
switch lower(Action)
case 'fnbanner'
tab = '';
wid = 72;
lch = '=';
case 'sfnbanner'
tab = sprintf('\t');
wid = 72-8;
lch = '-';
case 'ssfnbanner'
tab = sprintf('\t\t');
wid = 72-2*8;
lch = '-';
end
fprintf('\n%s%s',tab,str)
fprintf('%s',repmat(' ',1,wid-length([str,time])))
fprintf('%s\n%s',time,tab)
fprintf('%s',repmat(lch,1,wid)),fprintf('\n')
varargout = {str};
%=======================================================================
case 'dir' %-Identify specific (SPM) directory
%=======================================================================
% spm('Dir',Mfile)
%-----------------------------------------------------------------------
if nargin<2, Mfile='spm'; else Mfile=varargin{2}; end
SPMdir = which(Mfile);
if isempty(SPMdir) %-Not found or full pathname given
if exist(Mfile,'file')==2 %-Full pathname
SPMdir = Mfile;
else
error(['Can''t find ',Mfile,' on MATLABPATH']);
end
end
SPMdir = fileparts(SPMdir);
varargout = {SPMdir};
%=======================================================================
case 'ver' %-SPM version
%=======================================================================
% [SPMver, SPMrel] = spm('Ver',Mfile,ReDo)
%-----------------------------------------------------------------------
if nargin > 3, error('Too many input arguments.'); end
if nargin ~= 3, ReDo = false; else ReDo = logical(varargin{3}); end
if nargin == 1 || (nargin > 1 && isempty(varargin{2}))
Mfile = '';
else
Mfile = which(varargin{2});
if isempty(Mfile)
error('Can''t find %s on MATLABPATH.',varargin{2});
end
end
v = spm_version(ReDo);
if isempty(Mfile)
varargout = {v.Release, v.Version};
else
unknown = struct('file',Mfile,'id','???','date','','author','');
if ~isdeployed
fp = fopen(Mfile,'rt');
if fp == -1, error('Can''t read %s.',Mfile); end
str = fread(fp,Inf,'*uchar');
fclose(fp);
str = char(str(:)');
r = regexp(str,['\$Id: (?<file>\S+) (?<id>[0-9]+) (?<date>\S+) ' ...
'(\S+Z) (?<author>\S+) \$'],'names','once');
if isempty(r), r = unknown; end
else
r = unknown;
end
varargout = {r(1).id v.Release};
end
%=======================================================================
case 'version' %-SPM version
%=======================================================================
% v = spm('Version')
%-----------------------------------------------------------------------
[v, r] = spm('Ver');
varargout = {sprintf('%s (%s)',v,r)};
%=======================================================================
case 'mlver' %-MATLAB major & point version number
%=======================================================================
% v = spm('MLver')
%-----------------------------------------------------------------------
warning('spm(''MLver'') is deprecated. Use spm_check_version instead.');
v = version; tmp = find(v=='.');
if length(tmp)>1, varargout={v(1:tmp(2)-1)}; end
%=======================================================================
case 'tbs' %-Identify installed toolboxes
%=======================================================================
% xTB = spm('TBs')
%-----------------------------------------------------------------------
xTB = [];
% Toolbox directory
%-----------------------------------------------------------------------
try
Tdir = spm_get_defaults('tbx.dir');
catch
Tdir = { fullfile(spm('Dir'),'toolbox') };
end
for i=1:numel(Tdir)
%-List of potential installed toolboxes directories
%-------------------------------------------------------------------
if exist(Tdir{i},'dir')
d = dir(Tdir{i});
d = {d([d.isdir]).name};
d = {d{cellfun('isempty',regexp(d,'^\.'))}};
else
d = {};
end
%-Look for a "main" M-file in each potential directory
%-------------------------------------------------------------------
for j = 1:length(d)
tdir = fullfile(Tdir{i},d{j});
fn = cellstr(spm_select('List',tdir,['^.*' d{j} '\.m$']));
if ~isempty(fn{1})
xTB(end+1).name = strrep(d{j},'_','');
xTB(end).prog = spm_file(fn{1},'basename');
xTB(end).dir = tdir;
end
end
end
varargout{1} = xTB;
%=======================================================================
case 'tblaunch' %-Launch an SPM toolbox
%=======================================================================
% xTB = spm('TBlaunch',xTB,i)
%-----------------------------------------------------------------------
if nargin < 3, i = 1; else i = varargin{3}; end
if nargin < 2, xTB = spm('TBs'); else xTB = varargin{2}; end
if i == 0
spm_toolbox;
else
%-Addpath (& report)
%-------------------------------------------------------------------
if isempty(strfind(path,xTB(i).dir))
if ~isdeployed, addpath(xTB(i).dir,'-begin'); end
spm('alert"',{'Toolbox directory prepended to MATLAB path:',...
xTB(i).dir},...
[xTB(i).name,' toolbox'],1);
end
%-Launch
%-------------------------------------------------------------------
evalin('base',xTB(i).prog);
end
%=======================================================================
case 'getglobal' %-Get global variable cleanly
%=======================================================================
% varargout = spm('GetGlobal',varargin)
%-----------------------------------------------------------------------
wg = who('global');
for i=1:nargin-1
if any(strcmp(wg,varargin{i+1}))
eval(['global ',varargin{i+1},', tmp=',varargin{i+1},';'])
varargout{i} = tmp;
else
varargout{i} = [];
end
end
%=======================================================================
case 'cmdline' %-SPM command line mode?
%=======================================================================
% CmdLine = spm('CmdLine',CmdLine)
%-----------------------------------------------------------------------
if nargin<2, CmdLine=[]; else CmdLine=varargin{2}; end
if isempty(CmdLine)
try
CmdLine = spm_get_defaults('cmdline');
catch
CmdLine = false;
end
end
varargout = { CmdLine | (get(0,'ScreenDepth')==0) };
%=======================================================================
case 'popupcb' %-Callback handling utility for PopUp menus
%=======================================================================
% spm('PopUpCB',h,hdr)
%-----------------------------------------------------------------------
if nargin<2, h=[]; else h=varargin{2}; end
if nargin<3, hdr=1; else hdr=varargin{3}; end
if isempty(h), h=gcbo; end
v = get(h,'Value');
if v==hdr, return, end
set(h,'Value',1)