pyproject.toml

[tool.poetry]
name = "search-vdjdb"
version = "1.1.0"
description = "Query VDJdb based on a custom set of input params."
authors = ["Spencer Seale <spencerseale17@gmail.com>"]
license = "MIT"
readme = "README.md"
packages = [
    {include = "search_vdjdb", from = "src/python"},
]

[tool.poetry.dependencies]
python = "^3.9"
bs4 = "^0.0.2"
pandas = "^2.2.0"
toml = "^0.10.2"
importlib-resources = "^6.1.1"
requests = "^2.31.0"
attrs = "^23.2.0"
pydantic = "^2.6.2"
tiledb = "^0.26.0"
tiledb-cloud = "^0.11.10"

[tool.poetry.group.dev.dependencies]
pytest = "^8.0.1"
black = "^24.2.0"
pre-commit = "^3.6.2"
ruff = "^0.2.2"

[tool.black]
line-length = 99

[tool.ruff]
select = [
  "E",  # pycodestyle
  "F",  # pyflakes
  "I",  # isort
  "PD", # pandas-vet
]
line-length = 99
fix = true
logger-objects = ["logging_setup.logger"]

[tool.pytest.ini_options]
log_cli = true
log_cli_level = "INFO"
log_cli_format = "%(asctime)s [%(levelname)1s] -- %(message)s (%(filename)s:%(lineno)s)"
log_cli_date_format = "%d-%b-%y %H:%M:%S"
filterwarnings = ["ignore::DeprecationWarning"]

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"