diff --git a/ProteoformSuiteGUI/LoadDeconvolutionResults.Designer.cs b/ProteoformSuiteGUI/LoadDeconvolutionResults.Designer.cs index 8c8d0dd3..d611d4d7 100644 --- a/ProteoformSuiteGUI/LoadDeconvolutionResults.Designer.cs +++ b/ProteoformSuiteGUI/LoadDeconvolutionResults.Designer.cs @@ -29,443 +29,1156 @@ protected override void Dispose(bool disposing) private void InitializeComponent() { System.ComponentModel.ComponentResourceManager resources = new System.ComponentModel.ComponentResourceManager(typeof(LoadDeconvolutionResults)); - this.groupBox1 = new System.Windows.Forms.GroupBox(); - this.rb_unlabeled = new System.Windows.Forms.RadioButton(); - this.rb_neucode = new System.Windows.Forms.RadioButton(); - this.btn_clearFiles1 = new System.Windows.Forms.Button(); + this.splitContainer3 = new System.Windows.Forms.SplitContainer(); + this.splitContainer1 = new System.Windows.Forms.SplitContainer(); + this.splitContainer4 = new System.Windows.Forms.SplitContainer(); + this.splitContainer9 = new System.Windows.Forms.SplitContainer(); + this.cmb_loadTable1 = new System.Windows.Forms.ComboBox(); + this.dgv_loadFiles1 = new System.Windows.Forms.DataGridView(); + this.splitContainer5 = new System.Windows.Forms.SplitContainer(); this.btn_AddFiles1 = new System.Windows.Forms.Button(); + this.btn_clearFiles1 = new System.Windows.Forms.Button(); + this.splitContainer2 = new System.Windows.Forms.SplitContainer(); + this.splitContainer6 = new System.Windows.Forms.SplitContainer(); + this.splitContainer8 = new System.Windows.Forms.SplitContainer(); + this.cmb_loadTable2 = new System.Windows.Forms.ComboBox(); + this.dgv_loadFiles2 = new System.Windows.Forms.DataGridView(); + this.splitContainer7 = new System.Windows.Forms.SplitContainer(); this.btn_addFiles2 = new System.Windows.Forms.Button(); this.btn_clearFiles2 = new System.Windows.Forms.Button(); + this.splitContainer10 = new System.Windows.Forms.SplitContainer(); + this.splitContainer12 = new System.Windows.Forms.SplitContainer(); + this.cmb_loadTable3 = new System.Windows.Forms.ComboBox(); + this.dgv_loadFiles3 = new System.Windows.Forms.DataGridView(); + this.splitContainer11 = new System.Windows.Forms.SplitContainer(); this.btn_addFiles3 = new System.Windows.Forms.Button(); this.btn_clearFiles3 = new System.Windows.Forms.Button(); - this.dgv_loadFiles1 = new System.Windows.Forms.DataGridView(); - this.dgv_loadFiles2 = new System.Windows.Forms.DataGridView(); - this.dgv_loadFiles3 = new System.Windows.Forms.DataGridView(); - this.btn_fullRun = new System.Windows.Forms.Button(); - this.bt_clearResults = new System.Windows.Forms.Button(); + this.splitContainer13 = new System.Windows.Forms.SplitContainer(); + this.splitContainer14 = new System.Windows.Forms.SplitContainer(); + this.splitContainer15 = new System.Windows.Forms.SplitContainer(); + this.groupBox1 = new System.Windows.Forms.GroupBox(); + this.groupBox4 = new System.Windows.Forms.GroupBox(); this.groupBox3 = new System.Windows.Forms.GroupBox(); - this.lb_filter3 = new System.Windows.Forms.Label(); + this.splitContainer19 = new System.Windows.Forms.SplitContainer(); + this.splitContainer20 = new System.Windows.Forms.SplitContainer(); + this.splitContainer21 = new System.Windows.Forms.SplitContainer(); + this.tb_filter1 = new System.Windows.Forms.TextBox(); + this.tb_filter2 = new System.Windows.Forms.TextBox(); this.tb_filter3 = new System.Windows.Forms.TextBox(); - this.lb_filter2 = new System.Windows.Forms.Label(); + this.splitContainer22 = new System.Windows.Forms.SplitContainer(); + this.splitContainer23 = new System.Windows.Forms.SplitContainer(); this.lb_filter1 = new System.Windows.Forms.Label(); - this.tb_filter2 = new System.Windows.Forms.TextBox(); - this.tb_filter1 = new System.Windows.Forms.TextBox(); - this.cmb_loadTable1 = new System.Windows.Forms.ComboBox(); - this.cmb_loadTable2 = new System.Windows.Forms.ComboBox(); - this.cmb_loadTable3 = new System.Windows.Forms.ComboBox(); - this.groupBox4 = new System.Windows.Forms.GroupBox(); - this.rb_chemicalCalibration = new System.Windows.Forms.RadioButton(); - this.rb_standardOptions = new System.Windows.Forms.RadioButton(); - this.btn_stepThrough = new System.Windows.Forms.Button(); + this.lb_filter2 = new System.Windows.Forms.Label(); + this.lb_filter3 = new System.Windows.Forms.Label(); + this.splitContainer16 = new System.Windows.Forms.SplitContainer(); + this.splitContainer24 = new System.Windows.Forms.SplitContainer(); this.groupBox2 = new System.Windows.Forms.GroupBox(); - this.btn_browseSummarySaveFolder = new System.Windows.Forms.Button(); + this.splitContainer27 = new System.Windows.Forms.SplitContainer(); this.tb_resultsFolder = new System.Windows.Forms.TextBox(); - this.groupBox1.SuspendLayout(); + this.btn_browseSummarySaveFolder = new System.Windows.Forms.Button(); + this.splitContainer25 = new System.Windows.Forms.SplitContainer(); + this.btn_stepThrough = new System.Windows.Forms.Button(); + this.splitContainer26 = new System.Windows.Forms.SplitContainer(); + this.btn_fullRun = new System.Windows.Forms.Button(); + this.bt_clearResults = new System.Windows.Forms.Button(); + this.rb_neucode = new System.Windows.Forms.RadioButton(); + this.rb_unlabeled = new System.Windows.Forms.RadioButton(); + this.rb_standardOptions = new System.Windows.Forms.RadioButton(); + this.rb_chemicalCalibration = new System.Windows.Forms.RadioButton(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer3)).BeginInit(); + this.splitContainer3.Panel1.SuspendLayout(); + this.splitContainer3.Panel2.SuspendLayout(); + this.splitContainer3.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer1)).BeginInit(); + this.splitContainer1.Panel1.SuspendLayout(); + this.splitContainer1.Panel2.SuspendLayout(); + this.splitContainer1.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer4)).BeginInit(); + this.splitContainer4.Panel1.SuspendLayout(); + this.splitContainer4.Panel2.SuspendLayout(); + this.splitContainer4.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer9)).BeginInit(); + this.splitContainer9.Panel1.SuspendLayout(); + this.splitContainer9.Panel2.SuspendLayout(); + this.splitContainer9.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.dgv_loadFiles1)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer5)).BeginInit(); + this.splitContainer5.Panel1.SuspendLayout(); + this.splitContainer5.Panel2.SuspendLayout(); + this.splitContainer5.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer2)).BeginInit(); + this.splitContainer2.Panel1.SuspendLayout(); + this.splitContainer2.Panel2.SuspendLayout(); + this.splitContainer2.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer6)).BeginInit(); + this.splitContainer6.Panel1.SuspendLayout(); + this.splitContainer6.Panel2.SuspendLayout(); + this.splitContainer6.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer8)).BeginInit(); + this.splitContainer8.Panel1.SuspendLayout(); + this.splitContainer8.Panel2.SuspendLayout(); + this.splitContainer8.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.dgv_loadFiles2)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer7)).BeginInit(); + this.splitContainer7.Panel1.SuspendLayout(); + this.splitContainer7.Panel2.SuspendLayout(); + this.splitContainer7.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer10)).BeginInit(); + this.splitContainer10.Panel1.SuspendLayout(); + this.splitContainer10.Panel2.SuspendLayout(); + this.splitContainer10.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer12)).BeginInit(); + this.splitContainer12.Panel1.SuspendLayout(); + this.splitContainer12.Panel2.SuspendLayout(); + this.splitContainer12.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.dgv_loadFiles3)).BeginInit(); - this.groupBox3.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer11)).BeginInit(); + this.splitContainer11.Panel1.SuspendLayout(); + this.splitContainer11.Panel2.SuspendLayout(); + this.splitContainer11.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer13)).BeginInit(); + this.splitContainer13.Panel1.SuspendLayout(); + this.splitContainer13.Panel2.SuspendLayout(); + this.splitContainer13.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer14)).BeginInit(); + this.splitContainer14.Panel1.SuspendLayout(); + this.splitContainer14.Panel2.SuspendLayout(); + this.splitContainer14.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer15)).BeginInit(); + this.splitContainer15.Panel1.SuspendLayout(); + this.splitContainer15.Panel2.SuspendLayout(); + this.splitContainer15.SuspendLayout(); + this.groupBox1.SuspendLayout(); this.groupBox4.SuspendLayout(); + this.groupBox3.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer19)).BeginInit(); + this.splitContainer19.Panel1.SuspendLayout(); + this.splitContainer19.Panel2.SuspendLayout(); + this.splitContainer19.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer20)).BeginInit(); + this.splitContainer20.Panel1.SuspendLayout(); + this.splitContainer20.Panel2.SuspendLayout(); + this.splitContainer20.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer21)).BeginInit(); + this.splitContainer21.Panel1.SuspendLayout(); + this.splitContainer21.Panel2.SuspendLayout(); + this.splitContainer21.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer22)).BeginInit(); + this.splitContainer22.Panel1.SuspendLayout(); + this.splitContainer22.Panel2.SuspendLayout(); + this.splitContainer22.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer23)).BeginInit(); + this.splitContainer23.Panel1.SuspendLayout(); + this.splitContainer23.Panel2.SuspendLayout(); + this.splitContainer23.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer16)).BeginInit(); + this.splitContainer16.Panel1.SuspendLayout(); + this.splitContainer16.Panel2.SuspendLayout(); + this.splitContainer16.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer24)).BeginInit(); + this.splitContainer24.Panel2.SuspendLayout(); + this.splitContainer24.SuspendLayout(); this.groupBox2.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer27)).BeginInit(); + this.splitContainer27.Panel1.SuspendLayout(); + this.splitContainer27.Panel2.SuspendLayout(); + this.splitContainer27.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer25)).BeginInit(); + this.splitContainer25.Panel1.SuspendLayout(); + this.splitContainer25.Panel2.SuspendLayout(); + this.splitContainer25.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer26)).BeginInit(); + this.splitContainer26.Panel1.SuspendLayout(); + this.splitContainer26.Panel2.SuspendLayout(); + this.splitContainer26.SuspendLayout(); this.SuspendLayout(); // - // groupBox1 + // splitContainer3 // - this.groupBox1.Controls.Add(this.rb_unlabeled); - this.groupBox1.Controls.Add(this.rb_neucode); - this.groupBox1.Location = new System.Drawing.Point(13, 569); - this.groupBox1.Name = "groupBox1"; - this.groupBox1.Size = new System.Drawing.Size(213, 155); - this.groupBox1.TabIndex = 1; - this.groupBox1.TabStop = false; - this.groupBox1.Text = "Proteoform Identification Results"; + this.splitContainer3.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer3.IsSplitterFixed = true; + this.splitContainer3.Location = new System.Drawing.Point(0, 0); + this.splitContainer3.Name = "splitContainer3"; + this.splitContainer3.Orientation = System.Windows.Forms.Orientation.Horizontal; // - // rb_unlabeled + // splitContainer3.Panel1 // - this.rb_unlabeled.AutoSize = true; - this.rb_unlabeled.Location = new System.Drawing.Point(23, 57); - this.rb_unlabeled.Name = "rb_unlabeled"; - this.rb_unlabeled.Size = new System.Drawing.Size(73, 17); - this.rb_unlabeled.TabIndex = 1; - this.rb_unlabeled.Text = "Unlabeled"; - this.rb_unlabeled.UseVisualStyleBackColor = true; + this.splitContainer3.Panel1.Controls.Add(this.splitContainer1); // - // rb_neucode + // splitContainer3.Panel2 // - this.rb_neucode.AutoSize = true; - this.rb_neucode.Checked = true; - this.rb_neucode.Location = new System.Drawing.Point(23, 26); - this.rb_neucode.Name = "rb_neucode"; - this.rb_neucode.Size = new System.Drawing.Size(111, 17); - this.rb_neucode.TabIndex = 0; - this.rb_neucode.TabStop = true; - this.rb_neucode.Text = "NeuCode Labeled"; - this.rb_neucode.UseVisualStyleBackColor = true; - this.rb_neucode.CheckedChanged += new System.EventHandler(this.btn_neucode_CheckedChanged); + this.splitContainer3.Panel2.Controls.Add(this.splitContainer13); + this.splitContainer3.Size = new System.Drawing.Size(1362, 736); + this.splitContainer3.SplitterDistance = 551; + this.splitContainer3.TabIndex = 40; // - // btn_clearFiles1 + // splitContainer1 // - this.btn_clearFiles1.Location = new System.Drawing.Point(218, 518); - this.btn_clearFiles1.Name = "btn_clearFiles1"; - this.btn_clearFiles1.Size = new System.Drawing.Size(122, 36); - this.btn_clearFiles1.TabIndex = 7; - this.btn_clearFiles1.Text = "Clear"; - this.btn_clearFiles1.UseVisualStyleBackColor = true; - this.btn_clearFiles1.Click += new System.EventHandler(this.btn_clearFiles1_Click); + this.splitContainer1.BorderStyle = System.Windows.Forms.BorderStyle.Fixed3D; + this.splitContainer1.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer1.Location = new System.Drawing.Point(0, 0); + this.splitContainer1.Name = "splitContainer1"; // - // btn_AddFiles1 + // splitContainer1.Panel1 // - this.btn_AddFiles1.Location = new System.Drawing.Point(90, 518); - this.btn_AddFiles1.Name = "btn_AddFiles1"; - this.btn_AddFiles1.Size = new System.Drawing.Size(122, 36); - this.btn_AddFiles1.TabIndex = 8; - this.btn_AddFiles1.Text = "Add"; - this.btn_AddFiles1.UseVisualStyleBackColor = true; - this.btn_AddFiles1.Click += new System.EventHandler(this.btn_addFiles1_Click); + this.splitContainer1.Panel1.Controls.Add(this.splitContainer4); // - // btn_addFiles2 + // splitContainer1.Panel2 // - this.btn_addFiles2.Location = new System.Drawing.Point(552, 518); - this.btn_addFiles2.Name = "btn_addFiles2"; - this.btn_addFiles2.Size = new System.Drawing.Size(122, 36); - this.btn_addFiles2.TabIndex = 10; - this.btn_addFiles2.Text = "Add"; - this.btn_addFiles2.UseVisualStyleBackColor = true; - this.btn_addFiles2.Click += new System.EventHandler(this.btn_addFiles2_Click); + this.splitContainer1.Panel2.Controls.Add(this.splitContainer2); + this.splitContainer1.Size = new System.Drawing.Size(1362, 551); + this.splitContainer1.SplitterDistance = 429; + this.splitContainer1.TabIndex = 40; // - // btn_clearFiles2 + // splitContainer4 // - this.btn_clearFiles2.Location = new System.Drawing.Point(675, 518); - this.btn_clearFiles2.Name = "btn_clearFiles2"; - this.btn_clearFiles2.Size = new System.Drawing.Size(122, 36); - this.btn_clearFiles2.TabIndex = 9; - this.btn_clearFiles2.Text = "Clear"; - this.btn_clearFiles2.UseVisualStyleBackColor = true; - this.btn_clearFiles2.Click += new System.EventHandler(this.btn_clearFiles2_Click); + this.splitContainer4.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer4.IsSplitterFixed = true; + this.splitContainer4.Location = new System.Drawing.Point(0, 0); + this.splitContainer4.Name = "splitContainer4"; + this.splitContainer4.Orientation = System.Windows.Forms.Orientation.Horizontal; // - // btn_addFiles3 + // splitContainer4.Panel1 // - this.btn_addFiles3.Location = new System.Drawing.Point(991, 518); - this.btn_addFiles3.Name = "btn_addFiles3"; - this.btn_addFiles3.Size = new System.Drawing.Size(122, 36); - this.btn_addFiles3.TabIndex = 12; - this.btn_addFiles3.Text = "Add"; - this.btn_addFiles3.UseVisualStyleBackColor = true; - this.btn_addFiles3.Click += new System.EventHandler(this.btn_addFiles3_Click); + this.splitContainer4.Panel1.Controls.Add(this.splitContainer9); // - // btn_clearFiles3 + // splitContainer4.Panel2 // - this.btn_clearFiles3.Location = new System.Drawing.Point(1119, 518); - this.btn_clearFiles3.Name = "btn_clearFiles3"; - this.btn_clearFiles3.Size = new System.Drawing.Size(122, 36); - this.btn_clearFiles3.TabIndex = 11; - this.btn_clearFiles3.Text = "Clear"; - this.btn_clearFiles3.UseVisualStyleBackColor = true; - this.btn_clearFiles3.Click += new System.EventHandler(this.btn_clearFiles3_Click); + this.splitContainer4.Panel2.Controls.Add(this.splitContainer5); + this.splitContainer4.Size = new System.Drawing.Size(425, 547); + this.splitContainer4.SplitterDistance = 498; + this.splitContainer4.TabIndex = 43; + // + // splitContainer9 + // + this.splitContainer9.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer9.IsSplitterFixed = true; + this.splitContainer9.Location = new System.Drawing.Point(0, 0); + this.splitContainer9.Name = "splitContainer9"; + this.splitContainer9.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer9.Panel1 + // + this.splitContainer9.Panel1.Controls.Add(this.cmb_loadTable1); + // + // splitContainer9.Panel2 + // + this.splitContainer9.Panel2.Controls.Add(this.dgv_loadFiles1); + this.splitContainer9.Size = new System.Drawing.Size(425, 498); + this.splitContainer9.SplitterDistance = 26; + this.splitContainer9.TabIndex = 0; + // + // cmb_loadTable1 + // + this.cmb_loadTable1.Dock = System.Windows.Forms.DockStyle.Top; + this.cmb_loadTable1.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; + this.cmb_loadTable1.Font = new System.Drawing.Font("Microsoft Sans Serif", 11.25F, System.Drawing.FontStyle.Regular, System.Drawing.GraphicsUnit.Point, ((byte)(0))); + this.cmb_loadTable1.FormattingEnabled = true; + this.cmb_loadTable1.Location = new System.Drawing.Point(0, 0); + this.cmb_loadTable1.Name = "cmb_loadTable1"; + this.cmb_loadTable1.Size = new System.Drawing.Size(425, 26); + this.cmb_loadTable1.TabIndex = 41; + this.cmb_loadTable1.SelectedIndexChanged += new System.EventHandler(this.cmb_loadTable1_SelectedIndexChanged); + this.cmb_loadTable1.TextChanged += new System.EventHandler(this.cmb_loadTable1_TextChanged); // // dgv_loadFiles1 // this.dgv_loadFiles1.AllowDrop = true; this.dgv_loadFiles1.AllowUserToOrderColumns = true; this.dgv_loadFiles1.ColumnHeadersHeightSizeMode = System.Windows.Forms.DataGridViewColumnHeadersHeightSizeMode.AutoSize; - this.dgv_loadFiles1.Location = new System.Drawing.Point(12, 49); + this.dgv_loadFiles1.Dock = System.Windows.Forms.DockStyle.Fill; + this.dgv_loadFiles1.Location = new System.Drawing.Point(0, 0); this.dgv_loadFiles1.Name = "dgv_loadFiles1"; this.dgv_loadFiles1.RowTemplate.Height = 28; - this.dgv_loadFiles1.Size = new System.Drawing.Size(430, 463); - this.dgv_loadFiles1.TabIndex = 13; + this.dgv_loadFiles1.Size = new System.Drawing.Size(425, 468); + this.dgv_loadFiles1.TabIndex = 39; this.dgv_loadFiles1.CellFormatting += new System.Windows.Forms.DataGridViewCellFormattingEventHandler(this.dgv_loadFiles1_CellFormatting); this.dgv_loadFiles1.DragDrop += new System.Windows.Forms.DragEventHandler(this.dgv_deconResults_DragDrop); this.dgv_loadFiles1.DragEnter += new System.Windows.Forms.DragEventHandler(this.dgv_deconResults_DragEnter); // + // splitContainer5 + // + this.splitContainer5.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer5.IsSplitterFixed = true; + this.splitContainer5.Location = new System.Drawing.Point(0, 0); + this.splitContainer5.Name = "splitContainer5"; + // + // splitContainer5.Panel1 + // + this.splitContainer5.Panel1.Controls.Add(this.btn_AddFiles1); + // + // splitContainer5.Panel2 + // + this.splitContainer5.Panel2.Controls.Add(this.btn_clearFiles1); + this.splitContainer5.Size = new System.Drawing.Size(425, 45); + this.splitContainer5.SplitterDistance = 212; + this.splitContainer5.TabIndex = 0; + // + // btn_AddFiles1 + // + this.btn_AddFiles1.Dock = System.Windows.Forms.DockStyle.Fill; + this.btn_AddFiles1.Location = new System.Drawing.Point(0, 0); + this.btn_AddFiles1.Name = "btn_AddFiles1"; + this.btn_AddFiles1.Size = new System.Drawing.Size(212, 45); + this.btn_AddFiles1.TabIndex = 46; + this.btn_AddFiles1.Text = "Add"; + this.btn_AddFiles1.UseVisualStyleBackColor = true; + this.btn_AddFiles1.Click += new System.EventHandler(this.btn_addFiles1_Click); + // + // btn_clearFiles1 + // + this.btn_clearFiles1.Dock = System.Windows.Forms.DockStyle.Fill; + this.btn_clearFiles1.Location = new System.Drawing.Point(0, 0); + this.btn_clearFiles1.Name = "btn_clearFiles1"; + this.btn_clearFiles1.Size = new System.Drawing.Size(209, 45); + this.btn_clearFiles1.TabIndex = 46; + this.btn_clearFiles1.Text = "Clear"; + this.btn_clearFiles1.UseVisualStyleBackColor = true; + this.btn_clearFiles1.Click += new System.EventHandler(this.btn_clearFiles1_Click); + // + // splitContainer2 + // + this.splitContainer2.BorderStyle = System.Windows.Forms.BorderStyle.Fixed3D; + this.splitContainer2.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer2.Location = new System.Drawing.Point(0, 0); + this.splitContainer2.Name = "splitContainer2"; + // + // splitContainer2.Panel1 + // + this.splitContainer2.Panel1.Controls.Add(this.splitContainer6); + // + // splitContainer2.Panel2 + // + this.splitContainer2.Panel2.Controls.Add(this.splitContainer10); + this.splitContainer2.Size = new System.Drawing.Size(929, 551); + this.splitContainer2.SplitterDistance = 499; + this.splitContainer2.TabIndex = 0; + // + // splitContainer6 + // + this.splitContainer6.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer6.IsSplitterFixed = true; + this.splitContainer6.Location = new System.Drawing.Point(0, 0); + this.splitContainer6.Name = "splitContainer6"; + this.splitContainer6.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer6.Panel1 + // + this.splitContainer6.Panel1.Controls.Add(this.splitContainer8); + // + // splitContainer6.Panel2 + // + this.splitContainer6.Panel2.Controls.Add(this.splitContainer7); + this.splitContainer6.Size = new System.Drawing.Size(495, 547); + this.splitContainer6.SplitterDistance = 498; + this.splitContainer6.TabIndex = 38; + // + // splitContainer8 + // + this.splitContainer8.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer8.IsSplitterFixed = true; + this.splitContainer8.Location = new System.Drawing.Point(0, 0); + this.splitContainer8.Name = "splitContainer8"; + this.splitContainer8.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer8.Panel1 + // + this.splitContainer8.Panel1.Controls.Add(this.cmb_loadTable2); + // + // splitContainer8.Panel2 + // + this.splitContainer8.Panel2.Controls.Add(this.dgv_loadFiles2); + this.splitContainer8.Size = new System.Drawing.Size(495, 498); + this.splitContainer8.SplitterDistance = 28; + this.splitContainer8.TabIndex = 0; + // + // cmb_loadTable2 + // + this.cmb_loadTable2.Dock = System.Windows.Forms.DockStyle.Fill; + this.cmb_loadTable2.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; + this.cmb_loadTable2.Font = new System.Drawing.Font("Microsoft Sans Serif", 11.25F, System.Drawing.FontStyle.Regular, System.Drawing.GraphicsUnit.Point, ((byte)(0))); + this.cmb_loadTable2.FormattingEnabled = true; + this.cmb_loadTable2.Location = new System.Drawing.Point(0, 0); + this.cmb_loadTable2.Name = "cmb_loadTable2"; + this.cmb_loadTable2.Size = new System.Drawing.Size(495, 26); + this.cmb_loadTable2.TabIndex = 40; + this.cmb_loadTable2.SelectedIndexChanged += new System.EventHandler(this.cmb_loadTable2_SelectedIndexChanged); + this.cmb_loadTable2.TextChanged += new System.EventHandler(this.cmb_loadTable2_TextChanged); + // // dgv_loadFiles2 // this.dgv_loadFiles2.AllowDrop = true; this.dgv_loadFiles2.AllowUserToOrderColumns = true; this.dgv_loadFiles2.ColumnHeadersHeightSizeMode = System.Windows.Forms.DataGridViewColumnHeadersHeightSizeMode.AutoSize; - this.dgv_loadFiles2.Location = new System.Drawing.Point(460, 49); + this.dgv_loadFiles2.Dock = System.Windows.Forms.DockStyle.Fill; + this.dgv_loadFiles2.Location = new System.Drawing.Point(0, 0); this.dgv_loadFiles2.Name = "dgv_loadFiles2"; - this.dgv_loadFiles2.Size = new System.Drawing.Size(430, 463); - this.dgv_loadFiles2.TabIndex = 14; + this.dgv_loadFiles2.Size = new System.Drawing.Size(495, 466); + this.dgv_loadFiles2.TabIndex = 36; this.dgv_loadFiles2.CellFormatting += new System.Windows.Forms.DataGridViewCellFormattingEventHandler(this.dgv_loadFiles2_CellFormatting); this.dgv_loadFiles2.DragDrop += new System.Windows.Forms.DragEventHandler(this.dgv_quantResults_DragDrop); this.dgv_loadFiles2.DragEnter += new System.Windows.Forms.DragEventHandler(this.dgv_quantResults_DragEnter); // + // splitContainer7 + // + this.splitContainer7.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer7.IsSplitterFixed = true; + this.splitContainer7.Location = new System.Drawing.Point(0, 0); + this.splitContainer7.Name = "splitContainer7"; + // + // splitContainer7.Panel1 + // + this.splitContainer7.Panel1.Controls.Add(this.btn_addFiles2); + // + // splitContainer7.Panel2 + // + this.splitContainer7.Panel2.Controls.Add(this.btn_clearFiles2); + this.splitContainer7.Size = new System.Drawing.Size(495, 45); + this.splitContainer7.SplitterDistance = 246; + this.splitContainer7.TabIndex = 0; + // + // btn_addFiles2 + // + this.btn_addFiles2.Dock = System.Windows.Forms.DockStyle.Fill; + this.btn_addFiles2.Location = new System.Drawing.Point(0, 0); + this.btn_addFiles2.Name = "btn_addFiles2"; + this.btn_addFiles2.Size = new System.Drawing.Size(246, 45); + this.btn_addFiles2.TabIndex = 35; + this.btn_addFiles2.Text = "Add"; + this.btn_addFiles2.UseVisualStyleBackColor = true; + this.btn_addFiles2.Click += new System.EventHandler(this.btn_addFiles2_Click); + // + // btn_clearFiles2 + // + this.btn_clearFiles2.Dock = System.Windows.Forms.DockStyle.Fill; + this.btn_clearFiles2.Location = new System.Drawing.Point(0, 0); + this.btn_clearFiles2.Name = "btn_clearFiles2"; + this.btn_clearFiles2.Size = new System.Drawing.Size(245, 45); + this.btn_clearFiles2.TabIndex = 34; + this.btn_clearFiles2.Text = "Clear"; + this.btn_clearFiles2.UseVisualStyleBackColor = true; + this.btn_clearFiles2.Click += new System.EventHandler(this.btn_clearFiles2_Click); + // + // splitContainer10 + // + this.splitContainer10.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer10.IsSplitterFixed = true; + this.splitContainer10.Location = new System.Drawing.Point(0, 0); + this.splitContainer10.Name = "splitContainer10"; + this.splitContainer10.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer10.Panel1 + // + this.splitContainer10.Panel1.Controls.Add(this.splitContainer12); + // + // splitContainer10.Panel2 + // + this.splitContainer10.Panel2.Controls.Add(this.splitContainer11); + this.splitContainer10.Size = new System.Drawing.Size(422, 547); + this.splitContainer10.SplitterDistance = 498; + this.splitContainer10.TabIndex = 0; + // + // splitContainer12 + // + this.splitContainer12.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer12.IsSplitterFixed = true; + this.splitContainer12.Location = new System.Drawing.Point(0, 0); + this.splitContainer12.Name = "splitContainer12"; + this.splitContainer12.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer12.Panel1 + // + this.splitContainer12.Panel1.Controls.Add(this.cmb_loadTable3); + // + // splitContainer12.Panel2 + // + this.splitContainer12.Panel2.Controls.Add(this.dgv_loadFiles3); + this.splitContainer12.Size = new System.Drawing.Size(422, 498); + this.splitContainer12.SplitterDistance = 26; + this.splitContainer12.TabIndex = 0; + // + // cmb_loadTable3 + // + this.cmb_loadTable3.Dock = System.Windows.Forms.DockStyle.Top; + this.cmb_loadTable3.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; + this.cmb_loadTable3.Font = new System.Drawing.Font("Microsoft Sans Serif", 11.25F, System.Drawing.FontStyle.Regular, System.Drawing.GraphicsUnit.Point, ((byte)(0))); + this.cmb_loadTable3.FormattingEnabled = true; + this.cmb_loadTable3.Location = new System.Drawing.Point(0, 0); + this.cmb_loadTable3.Name = "cmb_loadTable3"; + this.cmb_loadTable3.Size = new System.Drawing.Size(422, 26); + this.cmb_loadTable3.TabIndex = 43; + this.cmb_loadTable3.SelectedIndexChanged += new System.EventHandler(this.cmb_loadTable3_SelectedIndexChanged); + this.cmb_loadTable3.TextChanged += new System.EventHandler(this.cmb_loadTable3_TextChanged); + // // dgv_loadFiles3 // this.dgv_loadFiles3.AllowDrop = true; this.dgv_loadFiles3.AllowUserToOrderColumns = true; this.dgv_loadFiles3.ColumnHeadersHeightSizeMode = System.Windows.Forms.DataGridViewColumnHeadersHeightSizeMode.AutoSize; - this.dgv_loadFiles3.Location = new System.Drawing.Point(907, 49); + this.dgv_loadFiles3.Dock = System.Windows.Forms.DockStyle.Fill; + this.dgv_loadFiles3.Location = new System.Drawing.Point(0, 0); this.dgv_loadFiles3.Name = "dgv_loadFiles3"; - this.dgv_loadFiles3.Size = new System.Drawing.Size(430, 463); - this.dgv_loadFiles3.TabIndex = 15; + this.dgv_loadFiles3.Size = new System.Drawing.Size(422, 468); + this.dgv_loadFiles3.TabIndex = 41; this.dgv_loadFiles3.CellFormatting += new System.Windows.Forms.DataGridViewCellFormattingEventHandler(this.dgv_loadFiles3_CellFormatting); this.dgv_loadFiles3.DragDrop += new System.Windows.Forms.DragEventHandler(this.dgv_calibrationResults_DragDrop); this.dgv_loadFiles3.DragEnter += new System.Windows.Forms.DragEventHandler(this.dgv_calibrationResults_DragEnter); // - // btn_fullRun + // splitContainer11 // - this.btn_fullRun.Location = new System.Drawing.Point(843, 626); - this.btn_fullRun.Name = "btn_fullRun"; - this.btn_fullRun.Size = new System.Drawing.Size(156, 92); - this.btn_fullRun.TabIndex = 17; - this.btn_fullRun.Text = "Full Run With Defaults"; - this.btn_fullRun.UseVisualStyleBackColor = true; - this.btn_fullRun.Click += new System.EventHandler(this.btn_fullRun_Click); + this.splitContainer11.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer11.IsSplitterFixed = true; + this.splitContainer11.Location = new System.Drawing.Point(0, 0); + this.splitContainer11.Name = "splitContainer11"; // - // bt_clearResults + // splitContainer11.Panel1 // - this.bt_clearResults.Location = new System.Drawing.Point(1005, 626); - this.bt_clearResults.Name = "bt_clearResults"; - this.bt_clearResults.Size = new System.Drawing.Size(156, 92); - this.bt_clearResults.TabIndex = 26; - this.bt_clearResults.Text = "Clear Results"; - this.bt_clearResults.UseVisualStyleBackColor = true; - this.bt_clearResults.Click += new System.EventHandler(this.bt_clearResults_Click); + this.splitContainer11.Panel1.Controls.Add(this.btn_addFiles3); + // + // splitContainer11.Panel2 + // + this.splitContainer11.Panel2.Controls.Add(this.btn_clearFiles3); + this.splitContainer11.Size = new System.Drawing.Size(422, 45); + this.splitContainer11.SplitterDistance = 211; + this.splitContainer11.TabIndex = 0; + // + // btn_addFiles3 + // + this.btn_addFiles3.Dock = System.Windows.Forms.DockStyle.Fill; + this.btn_addFiles3.Location = new System.Drawing.Point(0, 0); + this.btn_addFiles3.Name = "btn_addFiles3"; + this.btn_addFiles3.Size = new System.Drawing.Size(211, 45); + this.btn_addFiles3.TabIndex = 41; + this.btn_addFiles3.Text = "Add"; + this.btn_addFiles3.UseVisualStyleBackColor = true; + this.btn_addFiles3.Click += new System.EventHandler(this.btn_addFiles3_Click); + // + // btn_clearFiles3 + // + this.btn_clearFiles3.Dock = System.Windows.Forms.DockStyle.Fill; + this.btn_clearFiles3.Location = new System.Drawing.Point(0, 0); + this.btn_clearFiles3.Name = "btn_clearFiles3"; + this.btn_clearFiles3.Size = new System.Drawing.Size(207, 45); + this.btn_clearFiles3.TabIndex = 40; + this.btn_clearFiles3.Text = "Clear"; + this.btn_clearFiles3.UseVisualStyleBackColor = true; + this.btn_clearFiles3.Click += new System.EventHandler(this.btn_clearFiles3_Click); + // + // splitContainer13 + // + this.splitContainer13.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer13.Location = new System.Drawing.Point(0, 0); + this.splitContainer13.Name = "splitContainer13"; + // + // splitContainer13.Panel1 + // + this.splitContainer13.Panel1.Controls.Add(this.splitContainer14); + // + // splitContainer13.Panel2 + // + this.splitContainer13.Panel2.Controls.Add(this.splitContainer16); + this.splitContainer13.Size = new System.Drawing.Size(1362, 181); + this.splitContainer13.SplitterDistance = 508; + this.splitContainer13.TabIndex = 0; + // + // splitContainer14 + // + this.splitContainer14.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer14.Location = new System.Drawing.Point(0, 0); + this.splitContainer14.Name = "splitContainer14"; + this.splitContainer14.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer14.Panel1 + // + this.splitContainer14.Panel1.Controls.Add(this.splitContainer15); + // + // splitContainer14.Panel2 + // + this.splitContainer14.Panel2.Controls.Add(this.groupBox3); + this.splitContainer14.Size = new System.Drawing.Size(508, 181); + this.splitContainer14.SplitterDistance = 81; + this.splitContainer14.TabIndex = 0; + // + // splitContainer15 + // + this.splitContainer15.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer15.Location = new System.Drawing.Point(0, 0); + this.splitContainer15.Name = "splitContainer15"; + // + // splitContainer15.Panel1 + // + this.splitContainer15.Panel1.Controls.Add(this.groupBox1); + // + // splitContainer15.Panel2 + // + this.splitContainer15.Panel2.Controls.Add(this.groupBox4); + this.splitContainer15.Size = new System.Drawing.Size(508, 81); + this.splitContainer15.SplitterDistance = 251; + this.splitContainer15.TabIndex = 0; + // + // groupBox1 + // + this.groupBox1.Controls.Add(this.rb_neucode); + this.groupBox1.Controls.Add(this.rb_unlabeled); + this.groupBox1.Dock = System.Windows.Forms.DockStyle.Fill; + this.groupBox1.Location = new System.Drawing.Point(0, 0); + this.groupBox1.Name = "groupBox1"; + this.groupBox1.Size = new System.Drawing.Size(251, 81); + this.groupBox1.TabIndex = 47; + this.groupBox1.TabStop = false; + this.groupBox1.Text = "Proteoform Identification Results"; + // + // groupBox4 + // + this.groupBox4.Controls.Add(this.rb_standardOptions); + this.groupBox4.Controls.Add(this.rb_chemicalCalibration); + this.groupBox4.Dock = System.Windows.Forms.DockStyle.Fill; + this.groupBox4.Location = new System.Drawing.Point(0, 0); + this.groupBox4.Name = "groupBox4"; + this.groupBox4.Size = new System.Drawing.Size(253, 81); + this.groupBox4.TabIndex = 51; + this.groupBox4.TabStop = false; + this.groupBox4.Text = "Load Options"; // // groupBox3 // - this.groupBox3.Controls.Add(this.lb_filter3); - this.groupBox3.Controls.Add(this.tb_filter3); - this.groupBox3.Controls.Add(this.lb_filter2); - this.groupBox3.Controls.Add(this.lb_filter1); - this.groupBox3.Controls.Add(this.tb_filter2); - this.groupBox3.Controls.Add(this.tb_filter1); - this.groupBox3.Location = new System.Drawing.Point(232, 618); + this.groupBox3.Controls.Add(this.splitContainer19); + this.groupBox3.Dock = System.Windows.Forms.DockStyle.Fill; + this.groupBox3.Location = new System.Drawing.Point(0, 0); this.groupBox3.Name = "groupBox3"; - this.groupBox3.Size = new System.Drawing.Size(442, 100); - this.groupBox3.TabIndex = 29; + this.groupBox3.Size = new System.Drawing.Size(508, 96); + this.groupBox3.TabIndex = 50; this.groupBox3.TabStop = false; this.groupBox3.Text = "Text Filters"; // - // lb_filter3 + // splitContainer19 // - this.lb_filter3.AutoSize = true; - this.lb_filter3.Location = new System.Drawing.Point(114, 75); - this.lb_filter3.Name = "lb_filter3"; - this.lb_filter3.Size = new System.Drawing.Size(32, 13); - this.lb_filter3.TabIndex = 34; - this.lb_filter3.Text = "filter3"; + this.splitContainer19.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer19.IsSplitterFixed = true; + this.splitContainer19.Location = new System.Drawing.Point(3, 16); + this.splitContainer19.Name = "splitContainer19"; + // + // splitContainer19.Panel1 + // + this.splitContainer19.Panel1.Controls.Add(this.splitContainer20); + // + // splitContainer19.Panel2 + // + this.splitContainer19.Panel2.Controls.Add(this.splitContainer22); + this.splitContainer19.Size = new System.Drawing.Size(502, 77); + this.splitContainer19.SplitterDistance = 167; + this.splitContainer19.TabIndex = 0; + // + // splitContainer20 + // + this.splitContainer20.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer20.Location = new System.Drawing.Point(0, 0); + this.splitContainer20.Name = "splitContainer20"; + this.splitContainer20.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer20.Panel1 + // + this.splitContainer20.Panel1.Controls.Add(this.splitContainer21); + // + // splitContainer20.Panel2 + // + this.splitContainer20.Panel2.Controls.Add(this.tb_filter3); + this.splitContainer20.Size = new System.Drawing.Size(167, 77); + this.splitContainer20.SplitterDistance = 48; + this.splitContainer20.TabIndex = 0; + // + // splitContainer21 + // + this.splitContainer21.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer21.IsSplitterFixed = true; + this.splitContainer21.Location = new System.Drawing.Point(0, 0); + this.splitContainer21.Name = "splitContainer21"; + this.splitContainer21.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer21.Panel1 + // + this.splitContainer21.Panel1.Controls.Add(this.tb_filter1); + // + // splitContainer21.Panel2 + // + this.splitContainer21.Panel2.Controls.Add(this.tb_filter2); + this.splitContainer21.Size = new System.Drawing.Size(167, 48); + this.splitContainer21.SplitterDistance = 25; + this.splitContainer21.TabIndex = 0; + // + // tb_filter1 + // + this.tb_filter1.Dock = System.Windows.Forms.DockStyle.Fill; + this.tb_filter1.Location = new System.Drawing.Point(0, 0); + this.tb_filter1.Name = "tb_filter1"; + this.tb_filter1.Size = new System.Drawing.Size(167, 20); + this.tb_filter1.TabIndex = 54; + this.tb_filter1.TextChanged += new System.EventHandler(this.tb_filter1_TextChanged); + // + // tb_filter2 + // + this.tb_filter2.Dock = System.Windows.Forms.DockStyle.Fill; + this.tb_filter2.Location = new System.Drawing.Point(0, 0); + this.tb_filter2.Name = "tb_filter2"; + this.tb_filter2.Size = new System.Drawing.Size(167, 20); + this.tb_filter2.TabIndex = 55; + this.tb_filter2.TextChanged += new System.EventHandler(this.tb_filter2_TextChanged); // // tb_filter3 // - this.tb_filter3.Location = new System.Drawing.Point(8, 72); + this.tb_filter3.Dock = System.Windows.Forms.DockStyle.Fill; + this.tb_filter3.Location = new System.Drawing.Point(0, 0); this.tb_filter3.Name = "tb_filter3"; - this.tb_filter3.Size = new System.Drawing.Size(100, 20); - this.tb_filter3.TabIndex = 33; + this.tb_filter3.Size = new System.Drawing.Size(167, 20); + this.tb_filter3.TabIndex = 58; this.tb_filter3.TextChanged += new System.EventHandler(this.tb_filter3_TextChanged); // - // lb_filter2 + // splitContainer22 // - this.lb_filter2.AutoSize = true; - this.lb_filter2.Location = new System.Drawing.Point(114, 49); - this.lb_filter2.Name = "lb_filter2"; - this.lb_filter2.Size = new System.Drawing.Size(32, 13); - this.lb_filter2.TabIndex = 32; - this.lb_filter2.Text = "filter2"; + this.splitContainer22.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer22.Location = new System.Drawing.Point(0, 0); + this.splitContainer22.Name = "splitContainer22"; + this.splitContainer22.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer22.Panel1 + // + this.splitContainer22.Panel1.Controls.Add(this.splitContainer23); + // + // splitContainer22.Panel2 + // + this.splitContainer22.Panel2.Controls.Add(this.lb_filter3); + this.splitContainer22.Size = new System.Drawing.Size(331, 77); + this.splitContainer22.SplitterDistance = 48; + this.splitContainer22.TabIndex = 0; + // + // splitContainer23 + // + this.splitContainer23.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer23.IsSplitterFixed = true; + this.splitContainer23.Location = new System.Drawing.Point(0, 0); + this.splitContainer23.Name = "splitContainer23"; + this.splitContainer23.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer23.Panel1 + // + this.splitContainer23.Panel1.Controls.Add(this.lb_filter1); + // + // splitContainer23.Panel2 + // + this.splitContainer23.Panel2.Controls.Add(this.lb_filter2); + this.splitContainer23.Size = new System.Drawing.Size(331, 48); + this.splitContainer23.SplitterDistance = 25; + this.splitContainer23.TabIndex = 0; // // lb_filter1 // this.lb_filter1.AutoSize = true; - this.lb_filter1.Location = new System.Drawing.Point(114, 22); + this.lb_filter1.Dock = System.Windows.Forms.DockStyle.Fill; + this.lb_filter1.Location = new System.Drawing.Point(0, 0); this.lb_filter1.Name = "lb_filter1"; this.lb_filter1.Size = new System.Drawing.Size(32, 13); - this.lb_filter1.TabIndex = 31; + this.lb_filter1.TabIndex = 56; this.lb_filter1.Text = "filter1"; // - // tb_filter2 - // - this.tb_filter2.Location = new System.Drawing.Point(8, 46); - this.tb_filter2.Name = "tb_filter2"; - this.tb_filter2.Size = new System.Drawing.Size(100, 20); - this.tb_filter2.TabIndex = 30; - this.tb_filter2.TextChanged += new System.EventHandler(this.tb_filter2_TextChanged); - // - // tb_filter1 - // - this.tb_filter1.Location = new System.Drawing.Point(8, 19); - this.tb_filter1.Name = "tb_filter1"; - this.tb_filter1.Size = new System.Drawing.Size(100, 20); - this.tb_filter1.TabIndex = 29; - this.tb_filter1.TextChanged += new System.EventHandler(this.tb_filter1_TextChanged); + // lb_filter2 // - // cmb_loadTable1 + this.lb_filter2.AutoSize = true; + this.lb_filter2.Dock = System.Windows.Forms.DockStyle.Fill; + this.lb_filter2.Location = new System.Drawing.Point(0, 0); + this.lb_filter2.Name = "lb_filter2"; + this.lb_filter2.Size = new System.Drawing.Size(32, 13); + this.lb_filter2.TabIndex = 57; + this.lb_filter2.Text = "filter2"; // - this.cmb_loadTable1.Font = new System.Drawing.Font("Microsoft Sans Serif", 11.25F, System.Drawing.FontStyle.Regular, System.Drawing.GraphicsUnit.Point, ((byte)(0))); - this.cmb_loadTable1.FormattingEnabled = true; - this.cmb_loadTable1.Location = new System.Drawing.Point(13, 15); - this.cmb_loadTable1.Name = "cmb_loadTable1"; - this.cmb_loadTable1.Size = new System.Drawing.Size(429, 26); - this.cmb_loadTable1.TabIndex = 31; - this.cmb_loadTable1.SelectedIndexChanged += new System.EventHandler(this.cmb_loadTable1_SelectedIndexChanged); + // lb_filter3 // - // cmb_loadTable2 + this.lb_filter3.AutoSize = true; + this.lb_filter3.Dock = System.Windows.Forms.DockStyle.Fill; + this.lb_filter3.Location = new System.Drawing.Point(0, 0); + this.lb_filter3.Name = "lb_filter3"; + this.lb_filter3.Size = new System.Drawing.Size(32, 13); + this.lb_filter3.TabIndex = 59; + this.lb_filter3.Text = "filter3"; // - this.cmb_loadTable2.Font = new System.Drawing.Font("Microsoft Sans Serif", 11.25F, System.Drawing.FontStyle.Regular, System.Drawing.GraphicsUnit.Point, ((byte)(0))); - this.cmb_loadTable2.FormattingEnabled = true; - this.cmb_loadTable2.Location = new System.Drawing.Point(460, 15); - this.cmb_loadTable2.Name = "cmb_loadTable2"; - this.cmb_loadTable2.Size = new System.Drawing.Size(429, 26); - this.cmb_loadTable2.TabIndex = 32; - this.cmb_loadTable2.SelectedIndexChanged += new System.EventHandler(this.cmb_loadTable2_SelectedIndexChanged); + // splitContainer16 // - // cmb_loadTable3 + this.splitContainer16.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer16.IsSplitterFixed = true; + this.splitContainer16.Location = new System.Drawing.Point(0, 0); + this.splitContainer16.Name = "splitContainer16"; + this.splitContainer16.Orientation = System.Windows.Forms.Orientation.Horizontal; // - this.cmb_loadTable3.Font = new System.Drawing.Font("Microsoft Sans Serif", 11.25F, System.Drawing.FontStyle.Regular, System.Drawing.GraphicsUnit.Point, ((byte)(0))); - this.cmb_loadTable3.FormattingEnabled = true; - this.cmb_loadTable3.Location = new System.Drawing.Point(907, 15); - this.cmb_loadTable3.Name = "cmb_loadTable3"; - this.cmb_loadTable3.Size = new System.Drawing.Size(429, 26); - this.cmb_loadTable3.TabIndex = 33; - this.cmb_loadTable3.SelectedIndexChanged += new System.EventHandler(this.cmb_LoadTable3_SelectedIndexChanged); + // splitContainer16.Panel1 // - // groupBox4 + this.splitContainer16.Panel1.Controls.Add(this.splitContainer24); // - this.groupBox4.Controls.Add(this.rb_chemicalCalibration); - this.groupBox4.Controls.Add(this.rb_standardOptions); - this.groupBox4.Location = new System.Drawing.Point(232, 569); - this.groupBox4.Name = "groupBox4"; - this.groupBox4.Size = new System.Drawing.Size(442, 43); - this.groupBox4.TabIndex = 35; - this.groupBox4.TabStop = false; - this.groupBox4.Text = "Load Options"; + // splitContainer16.Panel2 // - // rb_chemicalCalibration + this.splitContainer16.Panel2.Controls.Add(this.splitContainer25); + this.splitContainer16.Size = new System.Drawing.Size(850, 181); + this.splitContainer16.SplitterDistance = 42; + this.splitContainer16.TabIndex = 0; // - this.rb_chemicalCalibration.AutoSize = true; - this.rb_chemicalCalibration.Location = new System.Drawing.Point(85, 17); - this.rb_chemicalCalibration.Name = "rb_chemicalCalibration"; - this.rb_chemicalCalibration.Size = new System.Drawing.Size(120, 17); - this.rb_chemicalCalibration.TabIndex = 37; - this.rb_chemicalCalibration.Text = "Chemical Calibration"; - this.rb_chemicalCalibration.UseVisualStyleBackColor = true; - this.rb_chemicalCalibration.CheckedChanged += new System.EventHandler(this.rb_chemicalCalibration_CheckedChanged); + // splitContainer24 // - // rb_standardOptions - // - this.rb_standardOptions.AutoSize = true; - this.rb_standardOptions.Checked = true; - this.rb_standardOptions.Location = new System.Drawing.Point(8, 17); - this.rb_standardOptions.Name = "rb_standardOptions"; - this.rb_standardOptions.Size = new System.Drawing.Size(68, 17); - this.rb_standardOptions.TabIndex = 36; - this.rb_standardOptions.TabStop = true; - this.rb_standardOptions.Text = "Standard"; - this.rb_standardOptions.UseVisualStyleBackColor = true; - this.rb_standardOptions.CheckedChanged += new System.EventHandler(this.rb_standardOptions_CheckedChanged); + this.splitContainer24.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer24.Location = new System.Drawing.Point(0, 0); + this.splitContainer24.Name = "splitContainer24"; // - // btn_stepThrough + // splitContainer24.Panel2 // - this.btn_stepThrough.Location = new System.Drawing.Point(680, 626); - this.btn_stepThrough.Name = "btn_stepThrough"; - this.btn_stepThrough.Size = new System.Drawing.Size(156, 92); - this.btn_stepThrough.TabIndex = 36; - this.btn_stepThrough.Text = "Step Through Processing"; - this.btn_stepThrough.UseVisualStyleBackColor = true; - this.btn_stepThrough.Click += new System.EventHandler(this.btn_stepThrough_Click); + this.splitContainer24.Panel2.Controls.Add(this.groupBox2); + this.splitContainer24.Size = new System.Drawing.Size(850, 42); + this.splitContainer24.SplitterDistance = 283; + this.splitContainer24.TabIndex = 0; // // groupBox2 // - this.groupBox2.Controls.Add(this.btn_browseSummarySaveFolder); - this.groupBox2.Controls.Add(this.tb_resultsFolder); - this.groupBox2.Location = new System.Drawing.Point(843, 569); + this.groupBox2.Controls.Add(this.splitContainer27); + this.groupBox2.Dock = System.Windows.Forms.DockStyle.Fill; + this.groupBox2.Location = new System.Drawing.Point(0, 0); this.groupBox2.Name = "groupBox2"; - this.groupBox2.Size = new System.Drawing.Size(318, 43); - this.groupBox2.TabIndex = 38; + this.groupBox2.Size = new System.Drawing.Size(563, 42); + this.groupBox2.TabIndex = 61; this.groupBox2.TabStop = false; this.groupBox2.Text = "Full Run Save Options"; // + // splitContainer27 + // + this.splitContainer27.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer27.Location = new System.Drawing.Point(3, 16); + this.splitContainer27.Name = "splitContainer27"; + // + // splitContainer27.Panel1 + // + this.splitContainer27.Panel1.Controls.Add(this.tb_resultsFolder); + // + // splitContainer27.Panel2 + // + this.splitContainer27.Panel2.Controls.Add(this.btn_browseSummarySaveFolder); + this.splitContainer27.Size = new System.Drawing.Size(557, 23); + this.splitContainer27.SplitterDistance = 294; + this.splitContainer27.TabIndex = 0; + // + // tb_resultsFolder + // + this.tb_resultsFolder.Dock = System.Windows.Forms.DockStyle.Fill; + this.tb_resultsFolder.Location = new System.Drawing.Point(0, 0); + this.tb_resultsFolder.Name = "tb_resultsFolder"; + this.tb_resultsFolder.Size = new System.Drawing.Size(294, 20); + this.tb_resultsFolder.TabIndex = 34; + // // btn_browseSummarySaveFolder // + this.btn_browseSummarySaveFolder.Dock = System.Windows.Forms.DockStyle.Fill; this.btn_browseSummarySaveFolder.Font = new System.Drawing.Font("Microsoft Sans Serif", 8.25F); - this.btn_browseSummarySaveFolder.Location = new System.Drawing.Point(172, 12); + this.btn_browseSummarySaveFolder.Location = new System.Drawing.Point(0, 0); this.btn_browseSummarySaveFolder.Name = "btn_browseSummarySaveFolder"; - this.btn_browseSummarySaveFolder.Size = new System.Drawing.Size(130, 26); - this.btn_browseSummarySaveFolder.TabIndex = 33; + this.btn_browseSummarySaveFolder.Size = new System.Drawing.Size(259, 23); + this.btn_browseSummarySaveFolder.TabIndex = 36; this.btn_browseSummarySaveFolder.Text = "Browse Results Folder"; this.btn_browseSummarySaveFolder.UseVisualStyleBackColor = true; this.btn_browseSummarySaveFolder.Click += new System.EventHandler(this.btn_browseSummarySaveFolder_Click); // - // tb_resultsFolder + // splitContainer25 // - this.tb_resultsFolder.Location = new System.Drawing.Point(6, 16); - this.tb_resultsFolder.Name = "tb_resultsFolder"; - this.tb_resultsFolder.Size = new System.Drawing.Size(160, 20); - this.tb_resultsFolder.TabIndex = 30; + this.splitContainer25.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer25.IsSplitterFixed = true; + this.splitContainer25.Location = new System.Drawing.Point(0, 0); + this.splitContainer25.Name = "splitContainer25"; + // + // splitContainer25.Panel1 + // + this.splitContainer25.Panel1.Controls.Add(this.btn_stepThrough); + // + // splitContainer25.Panel2 + // + this.splitContainer25.Panel2.Controls.Add(this.splitContainer26); + this.splitContainer25.Size = new System.Drawing.Size(850, 135); + this.splitContainer25.SplitterDistance = 283; + this.splitContainer25.TabIndex = 0; + // + // btn_stepThrough + // + this.btn_stepThrough.Dock = System.Windows.Forms.DockStyle.Fill; + this.btn_stepThrough.Location = new System.Drawing.Point(0, 0); + this.btn_stepThrough.Name = "btn_stepThrough"; + this.btn_stepThrough.Size = new System.Drawing.Size(283, 135); + this.btn_stepThrough.TabIndex = 60; + this.btn_stepThrough.Text = "Step Through Processing"; + this.btn_stepThrough.UseVisualStyleBackColor = true; + this.btn_stepThrough.Click += new System.EventHandler(this.btn_stepThrough_Click); + // + // splitContainer26 + // + this.splitContainer26.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer26.IsSplitterFixed = true; + this.splitContainer26.Location = new System.Drawing.Point(0, 0); + this.splitContainer26.Name = "splitContainer26"; + // + // splitContainer26.Panel1 + // + this.splitContainer26.Panel1.Controls.Add(this.btn_fullRun); + // + // splitContainer26.Panel2 + // + this.splitContainer26.Panel2.Controls.Add(this.bt_clearResults); + this.splitContainer26.Size = new System.Drawing.Size(563, 135); + this.splitContainer26.SplitterDistance = 283; + this.splitContainer26.TabIndex = 0; + // + // btn_fullRun + // + this.btn_fullRun.Dock = System.Windows.Forms.DockStyle.Fill; + this.btn_fullRun.Location = new System.Drawing.Point(0, 0); + this.btn_fullRun.Name = "btn_fullRun"; + this.btn_fullRun.Size = new System.Drawing.Size(283, 135); + this.btn_fullRun.TabIndex = 58; + this.btn_fullRun.Text = "Full Run With Defaults"; + this.btn_fullRun.UseVisualStyleBackColor = true; + this.btn_fullRun.Click += new System.EventHandler(this.btn_fullRun_Click); + // + // bt_clearResults + // + this.bt_clearResults.Dock = System.Windows.Forms.DockStyle.Fill; + this.bt_clearResults.Location = new System.Drawing.Point(0, 0); + this.bt_clearResults.Name = "bt_clearResults"; + this.bt_clearResults.Size = new System.Drawing.Size(276, 135); + this.bt_clearResults.TabIndex = 59; + this.bt_clearResults.Text = "Clear Results"; + this.bt_clearResults.UseVisualStyleBackColor = true; + this.bt_clearResults.Click += new System.EventHandler(this.bt_clearResults_Click); + // + // rb_neucode + // + this.rb_neucode.AutoSize = true; + this.rb_neucode.Checked = true; + this.rb_neucode.Location = new System.Drawing.Point(16, 22); + this.rb_neucode.Name = "rb_neucode"; + this.rb_neucode.Size = new System.Drawing.Size(111, 17); + this.rb_neucode.TabIndex = 56; + this.rb_neucode.TabStop = true; + this.rb_neucode.Text = "NeuCode Labeled"; + this.rb_neucode.UseVisualStyleBackColor = true; + this.rb_neucode.CheckedChanged += new System.EventHandler(this.btn_neucode_CheckedChanged); + // + // rb_unlabeled + // + this.rb_unlabeled.AutoSize = true; + this.rb_unlabeled.Location = new System.Drawing.Point(16, 46); + this.rb_unlabeled.Name = "rb_unlabeled"; + this.rb_unlabeled.Size = new System.Drawing.Size(73, 17); + this.rb_unlabeled.TabIndex = 57; + this.rb_unlabeled.Text = "Unlabeled"; + this.rb_unlabeled.UseVisualStyleBackColor = true; + // + // rb_standardOptions + // + this.rb_standardOptions.AutoSize = true; + this.rb_standardOptions.Checked = true; + this.rb_standardOptions.Location = new System.Drawing.Point(18, 22); + this.rb_standardOptions.Name = "rb_standardOptions"; + this.rb_standardOptions.Size = new System.Drawing.Size(68, 17); + this.rb_standardOptions.TabIndex = 56; + this.rb_standardOptions.TabStop = true; + this.rb_standardOptions.Text = "Standard"; + this.rb_standardOptions.UseVisualStyleBackColor = true; + this.rb_standardOptions.CheckedChanged += new System.EventHandler(this.rb_standardOptions_CheckedChanged); + // + // rb_chemicalCalibration + // + this.rb_chemicalCalibration.AutoSize = true; + this.rb_chemicalCalibration.Location = new System.Drawing.Point(18, 46); + this.rb_chemicalCalibration.Name = "rb_chemicalCalibration"; + this.rb_chemicalCalibration.Size = new System.Drawing.Size(120, 17); + this.rb_chemicalCalibration.TabIndex = 57; + this.rb_chemicalCalibration.Text = "Chemical Calibration"; + this.rb_chemicalCalibration.UseVisualStyleBackColor = true; + this.rb_chemicalCalibration.CheckedChanged += new System.EventHandler(this.rb_chemicalCalibration_CheckedChanged); // // LoadDeconvolutionResults // this.ClientSize = new System.Drawing.Size(1362, 736); this.ControlBox = false; - this.Controls.Add(this.groupBox2); - this.Controls.Add(this.btn_stepThrough); - this.Controls.Add(this.groupBox4); - this.Controls.Add(this.cmb_loadTable3); - this.Controls.Add(this.cmb_loadTable2); - this.Controls.Add(this.cmb_loadTable1); - this.Controls.Add(this.groupBox3); - this.Controls.Add(this.bt_clearResults); - this.Controls.Add(this.btn_fullRun); - this.Controls.Add(this.dgv_loadFiles3); - this.Controls.Add(this.dgv_loadFiles2); - this.Controls.Add(this.dgv_loadFiles1); - this.Controls.Add(this.btn_addFiles3); - this.Controls.Add(this.btn_clearFiles3); - this.Controls.Add(this.btn_addFiles2); - this.Controls.Add(this.btn_clearFiles2); - this.Controls.Add(this.btn_AddFiles1); - this.Controls.Add(this.btn_clearFiles1); - this.Controls.Add(this.groupBox1); + this.Controls.Add(this.splitContainer3); this.Icon = ((System.Drawing.Icon)(resources.GetObject("$this.Icon"))); this.Name = "LoadDeconvolutionResults"; this.Text = "Load Deconvolution Results and Protein Databases"; - this.groupBox1.ResumeLayout(false); - this.groupBox1.PerformLayout(); + this.splitContainer3.Panel1.ResumeLayout(false); + this.splitContainer3.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer3)).EndInit(); + this.splitContainer3.ResumeLayout(false); + this.splitContainer1.Panel1.ResumeLayout(false); + this.splitContainer1.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer1)).EndInit(); + this.splitContainer1.ResumeLayout(false); + this.splitContainer4.Panel1.ResumeLayout(false); + this.splitContainer4.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer4)).EndInit(); + this.splitContainer4.ResumeLayout(false); + this.splitContainer9.Panel1.ResumeLayout(false); + this.splitContainer9.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer9)).EndInit(); + this.splitContainer9.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.dgv_loadFiles1)).EndInit(); + this.splitContainer5.Panel1.ResumeLayout(false); + this.splitContainer5.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer5)).EndInit(); + this.splitContainer5.ResumeLayout(false); + this.splitContainer2.Panel1.ResumeLayout(false); + this.splitContainer2.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer2)).EndInit(); + this.splitContainer2.ResumeLayout(false); + this.splitContainer6.Panel1.ResumeLayout(false); + this.splitContainer6.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer6)).EndInit(); + this.splitContainer6.ResumeLayout(false); + this.splitContainer8.Panel1.ResumeLayout(false); + this.splitContainer8.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer8)).EndInit(); + this.splitContainer8.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.dgv_loadFiles2)).EndInit(); + this.splitContainer7.Panel1.ResumeLayout(false); + this.splitContainer7.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer7)).EndInit(); + this.splitContainer7.ResumeLayout(false); + this.splitContainer10.Panel1.ResumeLayout(false); + this.splitContainer10.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer10)).EndInit(); + this.splitContainer10.ResumeLayout(false); + this.splitContainer12.Panel1.ResumeLayout(false); + this.splitContainer12.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer12)).EndInit(); + this.splitContainer12.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.dgv_loadFiles3)).EndInit(); - this.groupBox3.ResumeLayout(false); - this.groupBox3.PerformLayout(); + this.splitContainer11.Panel1.ResumeLayout(false); + this.splitContainer11.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer11)).EndInit(); + this.splitContainer11.ResumeLayout(false); + this.splitContainer13.Panel1.ResumeLayout(false); + this.splitContainer13.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer13)).EndInit(); + this.splitContainer13.ResumeLayout(false); + this.splitContainer14.Panel1.ResumeLayout(false); + this.splitContainer14.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer14)).EndInit(); + this.splitContainer14.ResumeLayout(false); + this.splitContainer15.Panel1.ResumeLayout(false); + this.splitContainer15.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer15)).EndInit(); + this.splitContainer15.ResumeLayout(false); + this.groupBox1.ResumeLayout(false); + this.groupBox1.PerformLayout(); this.groupBox4.ResumeLayout(false); this.groupBox4.PerformLayout(); + this.groupBox3.ResumeLayout(false); + this.splitContainer19.Panel1.ResumeLayout(false); + this.splitContainer19.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer19)).EndInit(); + this.splitContainer19.ResumeLayout(false); + this.splitContainer20.Panel1.ResumeLayout(false); + this.splitContainer20.Panel2.ResumeLayout(false); + this.splitContainer20.Panel2.PerformLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer20)).EndInit(); + this.splitContainer20.ResumeLayout(false); + this.splitContainer21.Panel1.ResumeLayout(false); + this.splitContainer21.Panel1.PerformLayout(); + this.splitContainer21.Panel2.ResumeLayout(false); + this.splitContainer21.Panel2.PerformLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer21)).EndInit(); + this.splitContainer21.ResumeLayout(false); + this.splitContainer22.Panel1.ResumeLayout(false); + this.splitContainer22.Panel2.ResumeLayout(false); + this.splitContainer22.Panel2.PerformLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer22)).EndInit(); + this.splitContainer22.ResumeLayout(false); + this.splitContainer23.Panel1.ResumeLayout(false); + this.splitContainer23.Panel1.PerformLayout(); + this.splitContainer23.Panel2.ResumeLayout(false); + this.splitContainer23.Panel2.PerformLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer23)).EndInit(); + this.splitContainer23.ResumeLayout(false); + this.splitContainer16.Panel1.ResumeLayout(false); + this.splitContainer16.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer16)).EndInit(); + this.splitContainer16.ResumeLayout(false); + this.splitContainer24.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer24)).EndInit(); + this.splitContainer24.ResumeLayout(false); this.groupBox2.ResumeLayout(false); - this.groupBox2.PerformLayout(); + this.splitContainer27.Panel1.ResumeLayout(false); + this.splitContainer27.Panel1.PerformLayout(); + this.splitContainer27.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer27)).EndInit(); + this.splitContainer27.ResumeLayout(false); + this.splitContainer25.Panel1.ResumeLayout(false); + this.splitContainer25.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer25)).EndInit(); + this.splitContainer25.ResumeLayout(false); + this.splitContainer26.Panel1.ResumeLayout(false); + this.splitContainer26.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer26)).EndInit(); + this.splitContainer26.ResumeLayout(false); this.ResumeLayout(false); } #endregion - - private System.Windows.Forms.GroupBox groupBox1; - private System.Windows.Forms.RadioButton rb_unlabeled; - private System.Windows.Forms.RadioButton rb_neucode; - private System.Windows.Forms.Button btn_clearFiles1; + private System.Windows.Forms.SplitContainer splitContainer3; + private System.Windows.Forms.SplitContainer splitContainer1; + private System.Windows.Forms.SplitContainer splitContainer2; + private System.Windows.Forms.SplitContainer splitContainer4; + private System.Windows.Forms.SplitContainer splitContainer5; private System.Windows.Forms.Button btn_AddFiles1; + private System.Windows.Forms.Button btn_clearFiles1; + private System.Windows.Forms.SplitContainer splitContainer9; + private System.Windows.Forms.ComboBox cmb_loadTable1; + private System.Windows.Forms.DataGridView dgv_loadFiles1; + private System.Windows.Forms.SplitContainer splitContainer6; + private System.Windows.Forms.SplitContainer splitContainer8; + private System.Windows.Forms.ComboBox cmb_loadTable2; + private System.Windows.Forms.DataGridView dgv_loadFiles2; + private System.Windows.Forms.SplitContainer splitContainer7; private System.Windows.Forms.Button btn_addFiles2; private System.Windows.Forms.Button btn_clearFiles2; + private System.Windows.Forms.SplitContainer splitContainer10; + private System.Windows.Forms.SplitContainer splitContainer12; + private System.Windows.Forms.ComboBox cmb_loadTable3; + private System.Windows.Forms.DataGridView dgv_loadFiles3; + private System.Windows.Forms.SplitContainer splitContainer11; private System.Windows.Forms.Button btn_addFiles3; private System.Windows.Forms.Button btn_clearFiles3; - private System.Windows.Forms.DataGridView dgv_loadFiles1; - private System.Windows.Forms.DataGridView dgv_loadFiles2; - private System.Windows.Forms.DataGridView dgv_loadFiles3; - private System.Windows.Forms.Button btn_fullRun; - private System.Windows.Forms.Button bt_clearResults; + private System.Windows.Forms.SplitContainer splitContainer13; + private System.Windows.Forms.SplitContainer splitContainer14; + private System.Windows.Forms.SplitContainer splitContainer15; + private System.Windows.Forms.GroupBox groupBox1; + private System.Windows.Forms.GroupBox groupBox4; private System.Windows.Forms.GroupBox groupBox3; - private System.Windows.Forms.Label lb_filter2; - private System.Windows.Forms.Label lb_filter1; - private System.Windows.Forms.TextBox tb_filter2; + private System.Windows.Forms.SplitContainer splitContainer19; + private System.Windows.Forms.SplitContainer splitContainer20; + private System.Windows.Forms.SplitContainer splitContainer21; private System.Windows.Forms.TextBox tb_filter1; - private System.Windows.Forms.ComboBox cmb_loadTable1; - private System.Windows.Forms.ComboBox cmb_loadTable2; - private System.Windows.Forms.ComboBox cmb_loadTable3; - private System.Windows.Forms.GroupBox groupBox4; - private System.Windows.Forms.RadioButton rb_chemicalCalibration; - private System.Windows.Forms.RadioButton rb_standardOptions; - private System.Windows.Forms.Label lb_filter3; + private System.Windows.Forms.TextBox tb_filter2; private System.Windows.Forms.TextBox tb_filter3; - private System.Windows.Forms.Button btn_stepThrough; + private System.Windows.Forms.SplitContainer splitContainer22; + private System.Windows.Forms.SplitContainer splitContainer23; + private System.Windows.Forms.Label lb_filter1; + private System.Windows.Forms.Label lb_filter2; + private System.Windows.Forms.Label lb_filter3; + private System.Windows.Forms.SplitContainer splitContainer16; + private System.Windows.Forms.SplitContainer splitContainer24; private System.Windows.Forms.GroupBox groupBox2; + private System.Windows.Forms.SplitContainer splitContainer27; private System.Windows.Forms.TextBox tb_resultsFolder; private System.Windows.Forms.Button btn_browseSummarySaveFolder; + private System.Windows.Forms.SplitContainer splitContainer25; + private System.Windows.Forms.Button btn_stepThrough; + private System.Windows.Forms.SplitContainer splitContainer26; + private System.Windows.Forms.Button btn_fullRun; + private System.Windows.Forms.Button bt_clearResults; + private System.Windows.Forms.RadioButton rb_neucode; + private System.Windows.Forms.RadioButton rb_unlabeled; + private System.Windows.Forms.RadioButton rb_standardOptions; + private System.Windows.Forms.RadioButton rb_chemicalCalibration; } } \ No newline at end of file diff --git a/ProteoformSuiteGUI/LoadDeconvolutionResults.cs b/ProteoformSuiteGUI/LoadDeconvolutionResults.cs index 000c1c9b..43b99963 100644 --- a/ProteoformSuiteGUI/LoadDeconvolutionResults.cs +++ b/ProteoformSuiteGUI/LoadDeconvolutionResults.cs @@ -362,13 +362,24 @@ private void cmb_loadTable2_SelectedIndexChanged(object sender, EventArgs e) lb_filter2.Text = cmb_loadTable1.SelectedItem.ToString(); } - private void cmb_LoadTable3_SelectedIndexChanged(object sender, EventArgs e) + private void cmb_loadTable3_SelectedIndexChanged(object sender, EventArgs e) { DisplayUtility.FillDataGridView(dgv_loadFiles3, SaveState.lollipop.get_files(SaveState.lollipop.input_files, Lollipop.file_types[cmb_loadTable3.SelectedIndex]).Select(f => new DisplayInputFile(f))); DisplayInputFile.FormatInputFileTable(dgv_loadFiles3, Lollipop.file_types[cmb_loadTable3.SelectedIndex]); lb_filter3.Text = cmb_loadTable1.SelectedItem.ToString(); } + + //Do nothing when text changes + private void cmb_loadTable1_TextChanged(object sender, EventArgs e) { } + private void cmb_loadTable2_TextChanged(object sender, EventArgs e) { } + private void cmb_loadTable3_TextChanged(object sender, EventArgs e) { } + + #endregion CHANGED TABLE SELECTION Private Methods + private void rb_unlabeled_CheckedChanged(object sender, EventArgs e) + { + + } } } diff --git a/ProteoformSuiteGUI/NeuCodePairs.cs b/ProteoformSuiteGUI/NeuCodePairs.cs index 22ced2d5..a5a45549 100644 --- a/ProteoformSuiteGUI/NeuCodePairs.cs +++ b/ProteoformSuiteGUI/NeuCodePairs.cs @@ -33,7 +33,7 @@ public bool ReadyToRunTheGamut() public void RunTheGamut() { - ClearListsTablesFigures(true); + //ClearListsTablesFigures(true); No need to clear tables for graphing and filling tables GraphLysineCount(); GraphIntensityRatio(); FillNeuCodePairsDGV(); diff --git a/ProteoformSuiteGUI/Program.cs b/ProteoformSuiteGUI/Program.cs index ef5e637c..36baedb2 100644 --- a/ProteoformSuiteGUI/Program.cs +++ b/ProteoformSuiteGUI/Program.cs @@ -11,9 +11,16 @@ static class Program [STAThread] static void Main() { + if (Environment.OSVersion.Version.Major >= 6) + { + SetProcessDPIAware(); + } Application.EnableVisualStyles(); Application.SetCompatibleTextRenderingDefault(false); Application.Run(new ProteoformSweet()); } + + [System.Runtime.InteropServices.DllImport("user32.dll")] + private static extern bool SetProcessDPIAware(); } } diff --git a/ProteoformSuiteGUI/ProteoformFamilies.Designer.cs b/ProteoformSuiteGUI/ProteoformFamilies.Designer.cs index 72ec7d10..f9473ede 100644 --- a/ProteoformSuiteGUI/ProteoformFamilies.Designer.cs +++ b/ProteoformSuiteGUI/ProteoformFamilies.Designer.cs @@ -50,6 +50,7 @@ private void InitializeComponent() this.cmbx_tableSelector = new System.Windows.Forms.ComboBox(); this.splitContainer3 = new System.Windows.Forms.SplitContainer(); this.dgv_proteoform_family_members = new System.Windows.Forms.DataGridView(); + this.rtb_proteoformFamilyResults = new System.Windows.Forms.RichTextBox(); this.groupBox2 = new System.Windows.Forms.GroupBox(); this.tb_likelyCleavages = new System.Windows.Forms.TextBox(); this.label12 = new System.Windows.Forms.Label(); @@ -74,7 +75,6 @@ private void InitializeComponent() this.tb_familyBuildFolder = new System.Windows.Forms.TextBox(); this.btn_browseTempFolder = new System.Windows.Forms.Button(); this.Families_update = new System.Windows.Forms.Button(); - this.rtb_proteoformFamilyResults = new System.Windows.Forms.RichTextBox(); ((System.ComponentModel.ISupportInitialize)(this.splitContainer1)).BeginInit(); this.splitContainer1.Panel1.SuspendLayout(); this.splitContainer1.Panel2.SuspendLayout(); @@ -174,11 +174,13 @@ private void InitializeComponent() // // cmbx_nodeLabel // + this.cmbx_nodeLabel.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_nodeLabel.FormattingEnabled = true; this.cmbx_nodeLabel.Location = new System.Drawing.Point(7, 165); this.cmbx_nodeLabel.Name = "cmbx_nodeLabel"; this.cmbx_nodeLabel.Size = new System.Drawing.Size(121, 21); this.cmbx_nodeLabel.TabIndex = 51; + this.cmbx_nodeLabel.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // label10 // @@ -193,12 +195,14 @@ private void InitializeComponent() // // cmbx_geneLabel // + this.cmbx_geneLabel.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_geneLabel.FormattingEnabled = true; this.cmbx_geneLabel.Location = new System.Drawing.Point(6, 244); this.cmbx_geneLabel.Name = "cmbx_geneLabel"; this.cmbx_geneLabel.Size = new System.Drawing.Size(121, 21); this.cmbx_geneLabel.TabIndex = 49; this.cmbx_geneLabel.SelectedIndexChanged += new System.EventHandler(this.cmbx_geneLabel_SelectedIndexChanged); + this.cmbx_geneLabel.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // label9 // @@ -213,11 +217,13 @@ private void InitializeComponent() // // cmbx_edgeLabel // + this.cmbx_edgeLabel.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_edgeLabel.FormattingEnabled = true; this.cmbx_edgeLabel.Location = new System.Drawing.Point(7, 193); this.cmbx_edgeLabel.Name = "cmbx_edgeLabel"; this.cmbx_edgeLabel.Size = new System.Drawing.Size(121, 21); this.cmbx_edgeLabel.TabIndex = 47; + this.cmbx_edgeLabel.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // label6 // @@ -271,27 +277,33 @@ private void InitializeComponent() // // cmbx_nodeLabelPositioning // + this.cmbx_nodeLabelPositioning.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_nodeLabelPositioning.FormattingEnabled = true; this.cmbx_nodeLabelPositioning.Location = new System.Drawing.Point(7, 138); this.cmbx_nodeLabelPositioning.Name = "cmbx_nodeLabelPositioning"; this.cmbx_nodeLabelPositioning.Size = new System.Drawing.Size(121, 21); this.cmbx_nodeLabelPositioning.TabIndex = 38; + this.cmbx_nodeLabelPositioning.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // cmbx_nodeLayout // + this.cmbx_nodeLayout.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_nodeLayout.FormattingEnabled = true; this.cmbx_nodeLayout.Location = new System.Drawing.Point(7, 111); this.cmbx_nodeLayout.Name = "cmbx_nodeLayout"; this.cmbx_nodeLayout.Size = new System.Drawing.Size(121, 21); this.cmbx_nodeLayout.TabIndex = 37; + this.cmbx_nodeLayout.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // cmbx_colorScheme // + this.cmbx_colorScheme.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_colorScheme.FormattingEnabled = true; this.cmbx_colorScheme.Location = new System.Drawing.Point(7, 84); this.cmbx_colorScheme.Name = "cmbx_colorScheme"; this.cmbx_colorScheme.Size = new System.Drawing.Size(121, 21); this.cmbx_colorScheme.TabIndex = 36; + this.cmbx_colorScheme.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // lb_dgv_selection // @@ -305,12 +317,14 @@ private void InitializeComponent() // // cmbx_tableSelector // + this.cmbx_tableSelector.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_tableSelector.FormattingEnabled = true; this.cmbx_tableSelector.Location = new System.Drawing.Point(7, 10); this.cmbx_tableSelector.Name = "cmbx_tableSelector"; this.cmbx_tableSelector.Size = new System.Drawing.Size(121, 21); this.cmbx_tableSelector.TabIndex = 5; this.cmbx_tableSelector.SelectedIndexChanged += new System.EventHandler(this.cmbx_tableSelector_SelectedIndexChanged); + this.cmbx_tableSelector.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // splitContainer3 // @@ -358,6 +372,15 @@ private void InitializeComponent() this.dgv_proteoform_family_members.Size = new System.Drawing.Size(675, 513); this.dgv_proteoform_family_members.TabIndex = 3; // + // rtb_proteoformFamilyResults + // + this.rtb_proteoformFamilyResults.Anchor = System.Windows.Forms.AnchorStyles.Bottom; + this.rtb_proteoformFamilyResults.Location = new System.Drawing.Point(17, 390); + this.rtb_proteoformFamilyResults.Name = "rtb_proteoformFamilyResults"; + this.rtb_proteoformFamilyResults.Size = new System.Drawing.Size(463, 84); + this.rtb_proteoformFamilyResults.TabIndex = 63; + this.rtb_proteoformFamilyResults.Text = ""; + // // groupBox2 // this.groupBox2.Controls.Add(this.tb_likelyCleavages); @@ -609,15 +632,6 @@ private void InitializeComponent() this.Families_update.UseVisualStyleBackColor = true; this.Families_update.Click += new System.EventHandler(this.Families_update_Click); // - // rtb_proteoformFamilyResults - // - this.rtb_proteoformFamilyResults.Anchor = System.Windows.Forms.AnchorStyles.Bottom; - this.rtb_proteoformFamilyResults.Location = new System.Drawing.Point(17, 390); - this.rtb_proteoformFamilyResults.Name = "rtb_proteoformFamilyResults"; - this.rtb_proteoformFamilyResults.Size = new System.Drawing.Size(463, 84); - this.rtb_proteoformFamilyResults.TabIndex = 63; - this.rtb_proteoformFamilyResults.Text = ""; - // // ProteoformFamilies // this.AutoScaleDimensions = new System.Drawing.SizeF(6F, 13F); diff --git a/ProteoformSuiteGUI/ProteoformFamilies.cs b/ProteoformSuiteGUI/ProteoformFamilies.cs index ed731aac..52e91581 100644 --- a/ProteoformSuiteGUI/ProteoformFamilies.cs +++ b/ProteoformSuiteGUI/ProteoformFamilies.cs @@ -393,7 +393,8 @@ private void tb_likelyCleavages_TextChanged(object sender, EventArgs e) SaveState.lollipop.likely_cleavages = tb_likelyCleavages.Text.Split(','); } - #endregion Private Methods + private void cmbx_empty_TextChanged(object sender, EventArgs e) { } + #endregion Private Methods } } diff --git a/ProteoformSuiteGUI/ProteoformSweet.Designer.cs b/ProteoformSuiteGUI/ProteoformSweet.Designer.cs index 037ae394..55792c92 100644 --- a/ProteoformSuiteGUI/ProteoformSweet.Designer.cs +++ b/ProteoformSuiteGUI/ProteoformSweet.Designer.cs @@ -32,6 +32,7 @@ private void InitializeComponent() this.menuStrip1 = new System.Windows.Forms.MenuStrip(); this.fileToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.exportTablesToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem(); + this.exportAllTablesToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.printToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.closeToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.resultsToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem(); @@ -49,7 +50,6 @@ private void InitializeComponent() this.saveMethodToolStripMenuItem1 = new System.Windows.Forms.ToolStripMenuItem(); this.loadSettingsToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.loadRunToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem(); - this.exportAllTablesToolStripMenuItem = new System.Windows.Forms.ToolStripMenuItem(); this.menuStrip1.SuspendLayout(); this.SuspendLayout(); // @@ -85,6 +85,13 @@ private void InitializeComponent() this.exportTablesToolStripMenuItem.Text = "Export Table"; this.exportTablesToolStripMenuItem.Click += new System.EventHandler(this.exportTablesToolStripMenuItem_Click); // + // exportAllTablesToolStripMenuItem + // + this.exportAllTablesToolStripMenuItem.Name = "exportAllTablesToolStripMenuItem"; + this.exportAllTablesToolStripMenuItem.Size = new System.Drawing.Size(160, 22); + this.exportAllTablesToolStripMenuItem.Text = "Export All Tables"; + this.exportAllTablesToolStripMenuItem.Click += new System.EventHandler(this.exportAllTablesToolStripMenuItem_Click); + // // printToolStripMenuItem // this.printToolStripMenuItem.Name = "printToolStripMenuItem"; @@ -217,17 +224,10 @@ private void InitializeComponent() this.loadRunToolStripMenuItem.Text = "Load && Run"; this.loadRunToolStripMenuItem.Click += new System.EventHandler(this.loadRunToolStripMenuItem_Click); // - // exportAllTablesToolStripMenuItem - // - this.exportAllTablesToolStripMenuItem.Name = "exportAllTablesToolStripMenuItem"; - this.exportAllTablesToolStripMenuItem.Size = new System.Drawing.Size(160, 22); - this.exportAllTablesToolStripMenuItem.Text = "Export All Tables"; - this.exportAllTablesToolStripMenuItem.Click += new System.EventHandler(this.exportAllTablesToolStripMenuItem_Click); - // // ProteoformSweet // - this.AutoScaleDimensions = new System.Drawing.SizeF(6F, 13F); - this.AutoScaleMode = System.Windows.Forms.AutoScaleMode.Font; + this.AutoScaleDimensions = new System.Drawing.SizeF(96F, 96F); + this.AutoScaleMode = System.Windows.Forms.AutoScaleMode.Dpi; this.BackColor = System.Drawing.SystemColors.Window; this.BackgroundImage = ((System.Drawing.Image)(resources.GetObject("$this.BackgroundImage"))); this.BackgroundImageLayout = System.Windows.Forms.ImageLayout.Center; diff --git a/ProteoformSuiteGUI/Quantification.Designer.cs b/ProteoformSuiteGUI/Quantification.Designer.cs index 1b7150a5..478a57e4 100755 --- a/ProteoformSuiteGUI/Quantification.Designer.cs +++ b/ProteoformSuiteGUI/Quantification.Designer.cs @@ -29,25 +29,61 @@ protected override void Dispose(bool disposing) private void InitializeComponent() { System.Windows.Forms.DataVisualization.Charting.ChartArea chartArea1 = new System.Windows.Forms.DataVisualization.Charting.ChartArea(); - System.Windows.Forms.DataVisualization.Charting.Series series1 = new System.Windows.Forms.DataVisualization.Charting.Series(); - System.Windows.Forms.DataVisualization.Charting.ChartArea chartArea2 = new System.Windows.Forms.DataVisualization.Charting.ChartArea(); System.Windows.Forms.DataVisualization.Charting.Legend legend1 = new System.Windows.Forms.DataVisualization.Charting.Legend(); + System.Windows.Forms.DataVisualization.Charting.Series series1 = new System.Windows.Forms.DataVisualization.Charting.Series(); System.Windows.Forms.DataVisualization.Charting.Series series2 = new System.Windows.Forms.DataVisualization.Charting.Series(); + System.Windows.Forms.DataVisualization.Charting.ChartArea chartArea2 = new System.Windows.Forms.DataVisualization.Charting.ChartArea(); System.Windows.Forms.DataVisualization.Charting.Series series3 = new System.Windows.Forms.DataVisualization.Charting.Series(); System.Windows.Forms.DataVisualization.Charting.ChartArea chartArea3 = new System.Windows.Forms.DataVisualization.Charting.ChartArea(); System.Windows.Forms.DataVisualization.Charting.Series series4 = new System.Windows.Forms.DataVisualization.Charting.Series(); System.Windows.Forms.DataVisualization.Charting.Series series5 = new System.Windows.Forms.DataVisualization.Charting.Series(); System.Windows.Forms.DataVisualization.Charting.Series series6 = new System.Windows.Forms.DataVisualization.Charting.Series(); System.ComponentModel.ComponentResourceManager resources = new System.ComponentModel.ComponentResourceManager(typeof(Quantification)); + this.splitContainer1 = new System.Windows.Forms.SplitContainer(); + this.splitContainer3 = new System.Windows.Forms.SplitContainer(); this.dgv_quantification_results = new System.Windows.Forms.DataGridView(); + this.splitContainer4 = new System.Windows.Forms.SplitContainer(); + this.groupBox1 = new System.Windows.Forms.GroupBox(); + this.nud_minObservations = new System.Windows.Forms.NumericUpDown(); + this.cmbx_observationsTypeRequired = new System.Windows.Forms.ComboBox(); + this.splitContainer5 = new System.Windows.Forms.SplitContainer(); this.gb_quantDataDisplaySelection = new System.Windows.Forms.GroupBox(); + this.tb_stdevIntensity = new System.Windows.Forms.TextBox(); + this.tb_avgIntensity = new System.Windows.Forms.TextBox(); + this.label16 = new System.Windows.Forms.Label(); + this.label17 = new System.Windows.Forms.Label(); this.label5 = new System.Windows.Forms.Label(); this.label4 = new System.Windows.Forms.Label(); this.nud_bkgdWidth = new System.Windows.Forms.NumericUpDown(); this.nud_bkgdShift = new System.Windows.Forms.NumericUpDown(); + this.ct_proteoformIntensities = new System.Windows.Forms.DataVisualization.Charting.Chart(); + this.splitContainer2 = new System.Windows.Forms.SplitContainer(); + this.splitContainer6 = new System.Windows.Forms.SplitContainer(); this.ct_volcano_logFold_logP = new System.Windows.Forms.DataVisualization.Charting.Chart(); + this.splitContainer7 = new System.Windows.Forms.SplitContainer(); + this.btn_refreshCalculation = new System.Windows.Forms.Button(); + this.splitContainer8 = new System.Windows.Forms.SplitContainer(); + this.groupBox2 = new System.Windows.Forms.GroupBox(); + this.splitContainer15 = new System.Windows.Forms.SplitContainer(); + this.cmbx_ratioNumerator = new System.Windows.Forms.ComboBox(); + this.splitContainer16 = new System.Windows.Forms.SplitContainer(); + this.label6 = new System.Windows.Forms.Label(); + this.cmbx_ratioDenominator = new System.Windows.Forms.ComboBox(); + this.splitContainer9 = new System.Windows.Forms.SplitContainer(); + this.groupBox6 = new System.Windows.Forms.GroupBox(); + this.label15 = new System.Windows.Forms.Label(); + this.tb_FDR = new System.Windows.Forms.TextBox(); + this.label13 = new System.Windows.Forms.Label(); + this.nud_Offset = new System.Windows.Forms.NumericUpDown(); + this.label12 = new System.Windows.Forms.Label(); + this.nud_sKnot_minFoldChange = new System.Windows.Forms.NumericUpDown(); + this.ct_relativeDifference = new System.Windows.Forms.DataVisualization.Charting.Chart(); + this.splitContainer10 = new System.Windows.Forms.SplitContainer(); this.dgv_goAnalysis = new System.Windows.Forms.DataGridView(); + this.splitContainer11 = new System.Windows.Forms.SplitContainer(); this.cmbx_goAspect = new System.Windows.Forms.ComboBox(); + this.splitContainer12 = new System.Windows.Forms.SplitContainer(); + this.splitContainer13 = new System.Windows.Forms.SplitContainer(); this.gb_goThresholds = new System.Windows.Forms.GroupBox(); this.label3 = new System.Windows.Forms.Label(); this.nud_intensity = new System.Windows.Forms.NumericUpDown(); @@ -55,14 +91,6 @@ private void InitializeComponent() this.nud_ratio = new System.Windows.Forms.NumericUpDown(); this.label1 = new System.Windows.Forms.Label(); this.nud_FDR = new System.Windows.Forms.NumericUpDown(); - this.ct_proteoformIntensities = new System.Windows.Forms.DataVisualization.Charting.Chart(); - this.groupBox1 = new System.Windows.Forms.GroupBox(); - this.nud_minObservations = new System.Windows.Forms.NumericUpDown(); - this.cmbx_observationsTypeRequired = new System.Windows.Forms.ComboBox(); - this.groupBox2 = new System.Windows.Forms.GroupBox(); - this.label6 = new System.Windows.Forms.Label(); - this.cmbx_ratioDenominator = new System.Windows.Forms.ComboBox(); - this.cmbx_ratioNumerator = new System.Windows.Forms.ComboBox(); this.gb_backgroundGoTerms = new System.Windows.Forms.GroupBox(); this.rb_detectedSampleSet = new System.Windows.Forms.RadioButton(); this.btn_customBackgroundBrowse = new System.Windows.Forms.Button(); @@ -71,15 +99,23 @@ private void InitializeComponent() this.rb_allTheoreticalProteins = new System.Windows.Forms.RadioButton(); this.rb_quantifiedSampleSet = new System.Windows.Forms.RadioButton(); this.groupBox4 = new System.Windows.Forms.GroupBox(); + this.splitContainer14 = new System.Windows.Forms.SplitContainer(); + this.btn_buildFamiliesWithSignificantChange = new System.Windows.Forms.Button(); + this.btn_buildFamiliesAllGO = new System.Windows.Forms.Button(); + this.cb_geneCentric = new System.Windows.Forms.CheckBox(); + this.btn_buildFromSelectedGoTerms = new System.Windows.Forms.Button(); + this.lb_timeStamp = new System.Windows.Forms.Label(); + this.tb_recentTimeStamp = new System.Windows.Forms.TextBox(); + this.btn_buildSelectedQuantFamilies = new System.Windows.Forms.Button(); + this.btn_buildAllFamilies = new System.Windows.Forms.Button(); + this.label_tempFileFolder = new System.Windows.Forms.Label(); + this.tb_familyBuildFolder = new System.Windows.Forms.TextBox(); + this.btn_browseTempFolder = new System.Windows.Forms.Button(); this.label7 = new System.Windows.Forms.Label(); this.cmbx_nodeLabel = new System.Windows.Forms.ComboBox(); - this.cb_geneCentric = new System.Windows.Forms.CheckBox(); this.label14 = new System.Windows.Forms.Label(); - this.btn_buildFamiliesWithSignificantChange = new System.Windows.Forms.Button(); this.cmbx_geneLabel = new System.Windows.Forms.ComboBox(); - this.btn_buildFamiliesAllGO = new System.Windows.Forms.Button(); this.label11 = new System.Windows.Forms.Label(); - this.btn_buildFromSelectedGoTerms = new System.Windows.Forms.Button(); this.cmbx_edgeLabel = new System.Windows.Forms.ComboBox(); this.groupBox5 = new System.Windows.Forms.GroupBox(); this.cb_boldLabel = new System.Windows.Forms.CheckBox(); @@ -90,74 +126,277 @@ private void InitializeComponent() this.cmbx_nodeLabelPositioning = new System.Windows.Forms.ComboBox(); this.cmbx_nodeLayout = new System.Windows.Forms.ComboBox(); this.cmbx_colorScheme = new System.Windows.Forms.ComboBox(); - this.lb_timeStamp = new System.Windows.Forms.Label(); - this.tb_recentTimeStamp = new System.Windows.Forms.TextBox(); - this.btn_buildSelectedQuantFamilies = new System.Windows.Forms.Button(); - this.btn_buildAllFamilies = new System.Windows.Forms.Button(); - this.label_tempFileFolder = new System.Windows.Forms.Label(); - this.tb_familyBuildFolder = new System.Windows.Forms.TextBox(); - this.btn_browseTempFolder = new System.Windows.Forms.Button(); - this.ct_relativeDifference = new System.Windows.Forms.DataVisualization.Charting.Chart(); - this.groupBox6 = new System.Windows.Forms.GroupBox(); - this.label15 = new System.Windows.Forms.Label(); - this.tb_FDR = new System.Windows.Forms.TextBox(); - this.label13 = new System.Windows.Forms.Label(); - this.nud_Offset = new System.Windows.Forms.NumericUpDown(); - this.label12 = new System.Windows.Forms.Label(); - this.nud_sKnot_minFoldChange = new System.Windows.Forms.NumericUpDown(); - this.btn_refreshCalculation = new System.Windows.Forms.Button(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer1)).BeginInit(); + this.splitContainer1.Panel1.SuspendLayout(); + this.splitContainer1.Panel2.SuspendLayout(); + this.splitContainer1.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer3)).BeginInit(); + this.splitContainer3.Panel1.SuspendLayout(); + this.splitContainer3.Panel2.SuspendLayout(); + this.splitContainer3.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.dgv_quantification_results)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer4)).BeginInit(); + this.splitContainer4.Panel1.SuspendLayout(); + this.splitContainer4.Panel2.SuspendLayout(); + this.splitContainer4.SuspendLayout(); + this.groupBox1.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.nud_minObservations)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer5)).BeginInit(); + this.splitContainer5.Panel1.SuspendLayout(); + this.splitContainer5.Panel2.SuspendLayout(); + this.splitContainer5.SuspendLayout(); this.gb_quantDataDisplaySelection.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.nud_bkgdWidth)).BeginInit(); ((System.ComponentModel.ISupportInitialize)(this.nud_bkgdShift)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.ct_proteoformIntensities)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer2)).BeginInit(); + this.splitContainer2.Panel1.SuspendLayout(); + this.splitContainer2.Panel2.SuspendLayout(); + this.splitContainer2.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer6)).BeginInit(); + this.splitContainer6.Panel1.SuspendLayout(); + this.splitContainer6.Panel2.SuspendLayout(); + this.splitContainer6.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.ct_volcano_logFold_logP)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer7)).BeginInit(); + this.splitContainer7.Panel1.SuspendLayout(); + this.splitContainer7.Panel2.SuspendLayout(); + this.splitContainer7.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer8)).BeginInit(); + this.splitContainer8.Panel1.SuspendLayout(); + this.splitContainer8.Panel2.SuspendLayout(); + this.splitContainer8.SuspendLayout(); + this.groupBox2.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer15)).BeginInit(); + this.splitContainer15.Panel1.SuspendLayout(); + this.splitContainer15.Panel2.SuspendLayout(); + this.splitContainer15.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer16)).BeginInit(); + this.splitContainer16.Panel1.SuspendLayout(); + this.splitContainer16.Panel2.SuspendLayout(); + this.splitContainer16.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer9)).BeginInit(); + this.splitContainer9.Panel1.SuspendLayout(); + this.splitContainer9.Panel2.SuspendLayout(); + this.splitContainer9.SuspendLayout(); + this.groupBox6.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.nud_Offset)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.nud_sKnot_minFoldChange)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.ct_relativeDifference)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer10)).BeginInit(); + this.splitContainer10.Panel1.SuspendLayout(); + this.splitContainer10.Panel2.SuspendLayout(); + this.splitContainer10.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.dgv_goAnalysis)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer11)).BeginInit(); + this.splitContainer11.Panel1.SuspendLayout(); + this.splitContainer11.Panel2.SuspendLayout(); + this.splitContainer11.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer12)).BeginInit(); + this.splitContainer12.Panel1.SuspendLayout(); + this.splitContainer12.Panel2.SuspendLayout(); + this.splitContainer12.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer13)).BeginInit(); + this.splitContainer13.Panel1.SuspendLayout(); + this.splitContainer13.Panel2.SuspendLayout(); + this.splitContainer13.SuspendLayout(); this.gb_goThresholds.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.nud_intensity)).BeginInit(); ((System.ComponentModel.ISupportInitialize)(this.nud_ratio)).BeginInit(); ((System.ComponentModel.ISupportInitialize)(this.nud_FDR)).BeginInit(); - ((System.ComponentModel.ISupportInitialize)(this.ct_proteoformIntensities)).BeginInit(); - this.groupBox1.SuspendLayout(); - ((System.ComponentModel.ISupportInitialize)(this.nud_minObservations)).BeginInit(); - this.groupBox2.SuspendLayout(); this.gb_backgroundGoTerms.SuspendLayout(); this.groupBox4.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer14)).BeginInit(); + this.splitContainer14.Panel1.SuspendLayout(); + this.splitContainer14.Panel2.SuspendLayout(); + this.splitContainer14.SuspendLayout(); this.groupBox5.SuspendLayout(); - ((System.ComponentModel.ISupportInitialize)(this.ct_relativeDifference)).BeginInit(); - this.groupBox6.SuspendLayout(); - ((System.ComponentModel.ISupportInitialize)(this.nud_Offset)).BeginInit(); - ((System.ComponentModel.ISupportInitialize)(this.nud_sKnot_minFoldChange)).BeginInit(); this.SuspendLayout(); // + // splitContainer1 + // + this.splitContainer1.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer1.IsSplitterFixed = true; + this.splitContainer1.Location = new System.Drawing.Point(0, 0); + this.splitContainer1.Name = "splitContainer1"; + // + // splitContainer1.Panel1 + // + this.splitContainer1.Panel1.Controls.Add(this.splitContainer3); + // + // splitContainer1.Panel2 + // + this.splitContainer1.Panel2.Controls.Add(this.splitContainer2); + this.splitContainer1.Size = new System.Drawing.Size(1454, 861); + this.splitContainer1.SplitterDistance = 484; + this.splitContainer1.TabIndex = 0; + // + // splitContainer3 + // + this.splitContainer3.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer3.Location = new System.Drawing.Point(0, 0); + this.splitContainer3.Name = "splitContainer3"; + this.splitContainer3.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer3.Panel1 + // + this.splitContainer3.Panel1.Controls.Add(this.dgv_quantification_results); + // + // splitContainer3.Panel2 + // + this.splitContainer3.Panel2.Controls.Add(this.splitContainer4); + this.splitContainer3.Size = new System.Drawing.Size(484, 861); + this.splitContainer3.SplitterDistance = 255; + this.splitContainer3.TabIndex = 0; + // // dgv_quantification_results // this.dgv_quantification_results.ColumnHeadersHeightSizeMode = System.Windows.Forms.DataGridViewColumnHeadersHeightSizeMode.AutoSize; - this.dgv_quantification_results.Location = new System.Drawing.Point(55, 32); + this.dgv_quantification_results.Dock = System.Windows.Forms.DockStyle.Fill; + this.dgv_quantification_results.Location = new System.Drawing.Point(0, 0); this.dgv_quantification_results.Margin = new System.Windows.Forms.Padding(2); this.dgv_quantification_results.Name = "dgv_quantification_results"; this.dgv_quantification_results.RowTemplate.Height = 28; - this.dgv_quantification_results.Size = new System.Drawing.Size(452, 298); - this.dgv_quantification_results.TabIndex = 0; + this.dgv_quantification_results.Size = new System.Drawing.Size(484, 255); + this.dgv_quantification_results.TabIndex = 19; + // + // splitContainer4 + // + this.splitContainer4.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer4.Location = new System.Drawing.Point(0, 0); + this.splitContainer4.Name = "splitContainer4"; + this.splitContainer4.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer4.Panel1 + // + this.splitContainer4.Panel1.Controls.Add(this.groupBox1); + // + // splitContainer4.Panel2 + // + this.splitContainer4.Panel2.Controls.Add(this.splitContainer5); + this.splitContainer4.Size = new System.Drawing.Size(484, 602); + this.splitContainer4.SplitterDistance = 71; + this.splitContainer4.TabIndex = 0; + // + // groupBox1 + // + this.groupBox1.AutoSizeMode = System.Windows.Forms.AutoSizeMode.GrowAndShrink; + this.groupBox1.Controls.Add(this.nud_minObservations); + this.groupBox1.Controls.Add(this.cmbx_observationsTypeRequired); + this.groupBox1.Dock = System.Windows.Forms.DockStyle.Fill; + this.groupBox1.Location = new System.Drawing.Point(0, 0); + this.groupBox1.Name = "groupBox1"; + this.groupBox1.Size = new System.Drawing.Size(484, 71); + this.groupBox1.TabIndex = 26; + this.groupBox1.TabStop = false; + this.groupBox1.Text = "Minimum Required Observations"; + // + // nud_minObservations + // + this.nud_minObservations.Location = new System.Drawing.Point(18, 19); + this.nud_minObservations.Minimum = new decimal(new int[] { + 1, + 0, + 0, + 0}); + this.nud_minObservations.Name = "nud_minObservations"; + this.nud_minObservations.Size = new System.Drawing.Size(52, 20); + this.nud_minObservations.TabIndex = 1; + this.nud_minObservations.Value = new decimal(new int[] { + 1, + 0, + 0, + 0}); + this.nud_minObservations.ValueChanged += new System.EventHandler(this.nud_minObservations_ValueChanged); + // + // cmbx_observationsTypeRequired + // + this.cmbx_observationsTypeRequired.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; + this.cmbx_observationsTypeRequired.FormattingEnabled = true; + this.cmbx_observationsTypeRequired.Location = new System.Drawing.Point(77, 19); + this.cmbx_observationsTypeRequired.Name = "cmbx_observationsTypeRequired"; + this.cmbx_observationsTypeRequired.Size = new System.Drawing.Size(369, 21); + this.cmbx_observationsTypeRequired.TabIndex = 0; + this.cmbx_observationsTypeRequired.SelectedIndexChanged += new System.EventHandler(this.cmbx_observationsTypeRequired_SelectedIndexChanged); + this.cmbx_observationsTypeRequired.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); + // + // splitContainer5 + // + this.splitContainer5.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer5.Location = new System.Drawing.Point(0, 0); + this.splitContainer5.Name = "splitContainer5"; + this.splitContainer5.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer5.Panel1 + // + this.splitContainer5.Panel1.Controls.Add(this.gb_quantDataDisplaySelection); + // + // splitContainer5.Panel2 + // + this.splitContainer5.Panel2.Controls.Add(this.ct_proteoformIntensities); + this.splitContainer5.Size = new System.Drawing.Size(484, 527); + this.splitContainer5.SplitterDistance = 78; + this.splitContainer5.TabIndex = 0; // // gb_quantDataDisplaySelection // + this.gb_quantDataDisplaySelection.AutoSizeMode = System.Windows.Forms.AutoSizeMode.GrowAndShrink; + this.gb_quantDataDisplaySelection.Controls.Add(this.tb_stdevIntensity); + this.gb_quantDataDisplaySelection.Controls.Add(this.tb_avgIntensity); + this.gb_quantDataDisplaySelection.Controls.Add(this.label16); + this.gb_quantDataDisplaySelection.Controls.Add(this.label17); this.gb_quantDataDisplaySelection.Controls.Add(this.label5); this.gb_quantDataDisplaySelection.Controls.Add(this.label4); this.gb_quantDataDisplaySelection.Controls.Add(this.nud_bkgdWidth); this.gb_quantDataDisplaySelection.Controls.Add(this.nud_bkgdShift); - this.gb_quantDataDisplaySelection.Location = new System.Drawing.Point(55, 462); + this.gb_quantDataDisplaySelection.Dock = System.Windows.Forms.DockStyle.Fill; + this.gb_quantDataDisplaySelection.Location = new System.Drawing.Point(0, 0); this.gb_quantDataDisplaySelection.Margin = new System.Windows.Forms.Padding(2); this.gb_quantDataDisplaySelection.Name = "gb_quantDataDisplaySelection"; this.gb_quantDataDisplaySelection.Padding = new System.Windows.Forms.Padding(2); - this.gb_quantDataDisplaySelection.Size = new System.Drawing.Size(452, 48); - this.gb_quantDataDisplaySelection.TabIndex = 5; + this.gb_quantDataDisplaySelection.Size = new System.Drawing.Size(484, 78); + this.gb_quantDataDisplaySelection.TabIndex = 20; this.gb_quantDataDisplaySelection.TabStop = false; - this.gb_quantDataDisplaySelection.Text = "Adjust Background Imputation (Units: Std. Dev. of Observed Values)"; + this.gb_quantDataDisplaySelection.Text = "Adjust Background Imputation (Units: Std. Dev. of Selected Pf Intensities)"; + // + // tb_stdevIntensity + // + this.tb_stdevIntensity.Location = new System.Drawing.Point(297, 17); + this.tb_stdevIntensity.Name = "tb_stdevIntensity"; + this.tb_stdevIntensity.ReadOnly = true; + this.tb_stdevIntensity.Size = new System.Drawing.Size(100, 20); + this.tb_stdevIntensity.TabIndex = 11; + // + // tb_avgIntensity + // + this.tb_avgIntensity.Location = new System.Drawing.Point(91, 18); + this.tb_avgIntensity.Name = "tb_avgIntensity"; + this.tb_avgIntensity.ReadOnly = true; + this.tb_avgIntensity.Size = new System.Drawing.Size(100, 20); + this.tb_avgIntensity.TabIndex = 10; + // + // label16 + // + this.label16.AutoSize = true; + this.label16.Location = new System.Drawing.Point(203, 22); + this.label16.Name = "label16"; + this.label16.Size = new System.Drawing.Size(88, 13); + this.label16.TabIndex = 9; + this.label16.Text = "Std Dev Intensity"; + // + // label17 + // + this.label17.AutoSize = true; + this.label17.Location = new System.Drawing.Point(16, 21); + this.label17.Name = "label17"; + this.label17.Size = new System.Drawing.Size(68, 13); + this.label17.TabIndex = 8; + this.label17.Text = "Avg Intensity"; // // label5 // this.label5.AutoSize = true; - this.label5.Location = new System.Drawing.Point(153, 22); + this.label5.Location = new System.Drawing.Point(315, 55); this.label5.Name = "label5"; this.label5.Size = new System.Drawing.Size(63, 13); this.label5.TabIndex = 7; @@ -166,7 +405,7 @@ private void InitializeComponent() // label4 // this.label4.AutoSize = true; - this.label4.Location = new System.Drawing.Point(15, 22); + this.label4.Location = new System.Drawing.Point(185, 55); this.label4.Name = "label4"; this.label4.Size = new System.Drawing.Size(56, 13); this.label4.TabIndex = 6; @@ -180,7 +419,7 @@ private void InitializeComponent() 0, 0, 65536}); - this.nud_bkgdWidth.Location = new System.Drawing.Point(220, 18); + this.nud_bkgdWidth.Location = new System.Drawing.Point(382, 51); this.nud_bkgdWidth.Maximum = new decimal(new int[] { 1, 0, @@ -209,7 +448,7 @@ private void InitializeComponent() 0, 0, 65536}); - this.nud_bkgdShift.Location = new System.Drawing.Point(77, 19); + this.nud_bkgdShift.Location = new System.Drawing.Point(247, 52); this.nud_bkgdShift.Maximum = new decimal(new int[] { 0, 0, @@ -230,268 +469,564 @@ private void InitializeComponent() -2147418112}); this.nud_bkgdShift.ValueChanged += new System.EventHandler(this.nud_bkgdShift_ValueChanged); // - // ct_volcano_logFold_logP + // ct_proteoformIntensities // chartArea1.Name = "ChartArea1"; - this.ct_volcano_logFold_logP.ChartAreas.Add(chartArea1); - this.ct_volcano_logFold_logP.Location = new System.Drawing.Point(523, 32); - this.ct_volcano_logFold_logP.Margin = new System.Windows.Forms.Padding(2); - this.ct_volcano_logFold_logP.Name = "ct_volcano_logFold_logP"; + this.ct_proteoformIntensities.ChartAreas.Add(chartArea1); + this.ct_proteoformIntensities.Dock = System.Windows.Forms.DockStyle.Fill; + legend1.Name = "Legend1"; + this.ct_proteoformIntensities.Legends.Add(legend1); + this.ct_proteoformIntensities.Location = new System.Drawing.Point(0, 0); + this.ct_proteoformIntensities.Name = "ct_proteoformIntensities"; series1.ChartArea = "ChartArea1"; series1.ChartType = System.Windows.Forms.DataVisualization.Charting.SeriesChartType.Point; + series1.Legend = "Legend1"; series1.Name = "Series1"; - this.ct_volcano_logFold_logP.Series.Add(series1); - this.ct_volcano_logFold_logP.Size = new System.Drawing.Size(476, 298); - this.ct_volcano_logFold_logP.TabIndex = 6; - this.ct_volcano_logFold_logP.Text = "Volcano"; + series2.ChartArea = "ChartArea1"; + series2.ChartType = System.Windows.Forms.DataVisualization.Charting.SeriesChartType.Line; + series2.Legend = "Legend1"; + series2.Name = "Series2"; + this.ct_proteoformIntensities.Series.Add(series1); + this.ct_proteoformIntensities.Series.Add(series2); + this.ct_proteoformIntensities.Size = new System.Drawing.Size(484, 445); + this.ct_proteoformIntensities.TabIndex = 25; + this.ct_proteoformIntensities.Text = "log2_intensity"; // - // dgv_goAnalysis + // splitContainer2 // - this.dgv_goAnalysis.ColumnHeadersHeightSizeMode = System.Windows.Forms.DataGridViewColumnHeadersHeightSizeMode.AutoSize; - this.dgv_goAnalysis.Location = new System.Drawing.Point(1010, 32); - this.dgv_goAnalysis.Margin = new System.Windows.Forms.Padding(2); - this.dgv_goAnalysis.Name = "dgv_goAnalysis"; - this.dgv_goAnalysis.RowTemplate.Height = 28; - this.dgv_goAnalysis.Size = new System.Drawing.Size(471, 298); - this.dgv_goAnalysis.TabIndex = 8; + this.splitContainer2.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer2.Location = new System.Drawing.Point(0, 0); + this.splitContainer2.Name = "splitContainer2"; // - // cmbx_goAspect + // splitContainer2.Panel1 // - this.cmbx_goAspect.FormattingEnabled = true; - this.cmbx_goAspect.Location = new System.Drawing.Point(1293, 335); - this.cmbx_goAspect.Margin = new System.Windows.Forms.Padding(2); - this.cmbx_goAspect.Name = "cmbx_goAspect"; - this.cmbx_goAspect.Size = new System.Drawing.Size(188, 21); - this.cmbx_goAspect.TabIndex = 9; + this.splitContainer2.Panel1.Controls.Add(this.splitContainer6); // - // gb_goThresholds + // splitContainer2.Panel2 // - this.gb_goThresholds.Controls.Add(this.label3); - this.gb_goThresholds.Controls.Add(this.nud_intensity); - this.gb_goThresholds.Controls.Add(this.label2); - this.gb_goThresholds.Controls.Add(this.nud_ratio); - this.gb_goThresholds.Controls.Add(this.label1); - this.gb_goThresholds.Controls.Add(this.nud_FDR); - this.gb_goThresholds.Location = new System.Drawing.Point(1010, 364); - this.gb_goThresholds.Margin = new System.Windows.Forms.Padding(2); - this.gb_goThresholds.Name = "gb_goThresholds"; - this.gb_goThresholds.Padding = new System.Windows.Forms.Padding(2); - this.gb_goThresholds.Size = new System.Drawing.Size(160, 149); - this.gb_goThresholds.TabIndex = 10; - this.gb_goThresholds.TabStop = false; - this.gb_goThresholds.Text = "GO Term Thresholds"; + this.splitContainer2.Panel2.Controls.Add(this.splitContainer10); + this.splitContainer2.Size = new System.Drawing.Size(966, 861); + this.splitContainer2.SplitterDistance = 485; + this.splitContainer2.TabIndex = 0; // - // label3 + // splitContainer6 // - this.label3.AutoSize = true; - this.label3.Location = new System.Drawing.Point(9, 78); - this.label3.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); - this.label3.Name = "label3"; - this.label3.Size = new System.Drawing.Size(55, 13); - this.label3.TabIndex = 5; - this.label3.Text = "Intensity >"; + this.splitContainer6.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer6.Location = new System.Drawing.Point(0, 0); + this.splitContainer6.Name = "splitContainer6"; + this.splitContainer6.Orientation = System.Windows.Forms.Orientation.Horizontal; // - // nud_intensity + // splitContainer6.Panel1 // - this.nud_intensity.Increment = new decimal(new int[] { - 1000, - 0, - 0, - 0}); - this.nud_intensity.Location = new System.Drawing.Point(71, 77); - this.nud_intensity.Margin = new System.Windows.Forms.Padding(2); - this.nud_intensity.Maximum = new decimal(new int[] { - -727379968, - 232, - 0, - 0}); - this.nud_intensity.Name = "nud_intensity"; - this.nud_intensity.Size = new System.Drawing.Size(80, 20); - this.nud_intensity.TabIndex = 4; + this.splitContainer6.Panel1.Controls.Add(this.ct_volcano_logFold_logP); // - // label2 + // splitContainer6.Panel2 // - this.label2.AutoSize = true; - this.label2.Location = new System.Drawing.Point(17, 52); - this.label2.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); - this.label2.Name = "label2"; - this.label2.Size = new System.Drawing.Size(45, 13); - this.label2.TabIndex = 3; - this.label2.Text = "|Ratio| >"; + this.splitContainer6.Panel2.Controls.Add(this.splitContainer7); + this.splitContainer6.Size = new System.Drawing.Size(485, 861); + this.splitContainer6.SplitterDistance = 309; + this.splitContainer6.TabIndex = 0; // - // nud_ratio + // ct_volcano_logFold_logP // - this.nud_ratio.DecimalPlaces = 1; - this.nud_ratio.Increment = new decimal(new int[] { - 1, - 0, - 0, - 65536}); - this.nud_ratio.Location = new System.Drawing.Point(71, 51); - this.nud_ratio.Margin = new System.Windows.Forms.Padding(2); - this.nud_ratio.Maximum = new decimal(new int[] { - 50, - 0, - 0, - 0}); - this.nud_ratio.Minimum = new decimal(new int[] { - 50, - 0, - 0, - -2147483648}); - this.nud_ratio.Name = "nud_ratio"; - this.nud_ratio.Size = new System.Drawing.Size(80, 20); - this.nud_ratio.TabIndex = 2; + chartArea2.Name = "ChartArea1"; + this.ct_volcano_logFold_logP.ChartAreas.Add(chartArea2); + this.ct_volcano_logFold_logP.Dock = System.Windows.Forms.DockStyle.Fill; + this.ct_volcano_logFold_logP.Location = new System.Drawing.Point(0, 0); + this.ct_volcano_logFold_logP.Margin = new System.Windows.Forms.Padding(2); + this.ct_volcano_logFold_logP.Name = "ct_volcano_logFold_logP"; + series3.ChartArea = "ChartArea1"; + series3.ChartType = System.Windows.Forms.DataVisualization.Charting.SeriesChartType.Point; + series3.Name = "Series1"; + this.ct_volcano_logFold_logP.Series.Add(series3); + this.ct_volcano_logFold_logP.Size = new System.Drawing.Size(485, 309); + this.ct_volcano_logFold_logP.TabIndex = 21; + this.ct_volcano_logFold_logP.Text = "Volcano"; // - // label1 + // splitContainer7 // - this.label1.AutoSize = true; - this.label1.Location = new System.Drawing.Point(13, 26); - this.label1.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); - this.label1.Name = "label1"; - this.label1.Size = new System.Drawing.Size(38, 13); - this.label1.TabIndex = 1; - this.label1.Text = "FDR <"; + this.splitContainer7.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer7.Location = new System.Drawing.Point(0, 0); + this.splitContainer7.Name = "splitContainer7"; + this.splitContainer7.Orientation = System.Windows.Forms.Orientation.Horizontal; // - // nud_FDR + // splitContainer7.Panel1 // - this.nud_FDR.DecimalPlaces = 2; - this.nud_FDR.Increment = new decimal(new int[] { - 1, - 0, - 0, - 131072}); - this.nud_FDR.Location = new System.Drawing.Point(71, 25); - this.nud_FDR.Margin = new System.Windows.Forms.Padding(2); - this.nud_FDR.Maximum = new decimal(new int[] { - 1, - 0, - 0, - 0}); - this.nud_FDR.Name = "nud_FDR"; - this.nud_FDR.Size = new System.Drawing.Size(80, 20); - this.nud_FDR.TabIndex = 0; + this.splitContainer7.Panel1.Controls.Add(this.btn_refreshCalculation); // - // ct_proteoformIntensities + // splitContainer7.Panel2 // - chartArea2.Name = "ChartArea1"; - this.ct_proteoformIntensities.ChartAreas.Add(chartArea2); - legend1.Name = "Legend1"; - this.ct_proteoformIntensities.Legends.Add(legend1); - this.ct_proteoformIntensities.Location = new System.Drawing.Point(55, 518); - this.ct_proteoformIntensities.Name = "ct_proteoformIntensities"; - series2.ChartArea = "ChartArea1"; - series2.ChartType = System.Windows.Forms.DataVisualization.Charting.SeriesChartType.Point; - series2.Legend = "Legend1"; - series2.Name = "Series1"; - series3.ChartArea = "ChartArea1"; - series3.ChartType = System.Windows.Forms.DataVisualization.Charting.SeriesChartType.Line; - series3.Legend = "Legend1"; - series3.Name = "Series2"; - this.ct_proteoformIntensities.Series.Add(series2); - this.ct_proteoformIntensities.Series.Add(series3); - this.ct_proteoformIntensities.Size = new System.Drawing.Size(452, 357); - this.ct_proteoformIntensities.TabIndex = 11; - this.ct_proteoformIntensities.Text = "log2_intensity"; + this.splitContainer7.Panel2.Controls.Add(this.splitContainer8); + this.splitContainer7.Size = new System.Drawing.Size(485, 548); + this.splitContainer7.SplitterDistance = 41; + this.splitContainer7.TabIndex = 0; // - // groupBox1 + // btn_refreshCalculation // - this.groupBox1.Controls.Add(this.nud_minObservations); - this.groupBox1.Controls.Add(this.cmbx_observationsTypeRequired); - this.groupBox1.Location = new System.Drawing.Point(57, 335); - this.groupBox1.Name = "groupBox1"; - this.groupBox1.Size = new System.Drawing.Size(452, 56); - this.groupBox1.TabIndex = 12; - this.groupBox1.TabStop = false; - this.groupBox1.Text = "Minimum Required Observations"; + this.btn_refreshCalculation.Dock = System.Windows.Forms.DockStyle.Fill; + this.btn_refreshCalculation.Location = new System.Drawing.Point(0, 0); + this.btn_refreshCalculation.Name = "btn_refreshCalculation"; + this.btn_refreshCalculation.Size = new System.Drawing.Size(485, 41); + this.btn_refreshCalculation.TabIndex = 32; + this.btn_refreshCalculation.Text = "Refresh Calculations"; + this.btn_refreshCalculation.UseVisualStyleBackColor = true; + this.btn_refreshCalculation.Click += new System.EventHandler(this.btn_refreshCalculation_Click); // - // nud_minObservations + // splitContainer8 // - this.nud_minObservations.Location = new System.Drawing.Point(18, 19); - this.nud_minObservations.Minimum = new decimal(new int[] { - 1, - 0, - 0, - 0}); - this.nud_minObservations.Name = "nud_minObservations"; - this.nud_minObservations.Size = new System.Drawing.Size(52, 20); - this.nud_minObservations.TabIndex = 1; - this.nud_minObservations.Value = new decimal(new int[] { - 1, - 0, - 0, - 0}); - this.nud_minObservations.ValueChanged += new System.EventHandler(this.nud_minObservations_ValueChanged); + this.splitContainer8.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer8.Location = new System.Drawing.Point(0, 0); + this.splitContainer8.Name = "splitContainer8"; + this.splitContainer8.Orientation = System.Windows.Forms.Orientation.Horizontal; // - // cmbx_observationsTypeRequired + // splitContainer8.Panel1 // - this.cmbx_observationsTypeRequired.FormattingEnabled = true; - this.cmbx_observationsTypeRequired.Location = new System.Drawing.Point(77, 19); - this.cmbx_observationsTypeRequired.Name = "cmbx_observationsTypeRequired"; - this.cmbx_observationsTypeRequired.Size = new System.Drawing.Size(369, 21); - this.cmbx_observationsTypeRequired.TabIndex = 0; - this.cmbx_observationsTypeRequired.SelectedIndexChanged += new System.EventHandler(this.cmbx_observationsTypeRequired_SelectedIndexChanged); + this.splitContainer8.Panel1.Controls.Add(this.groupBox2); + // + // splitContainer8.Panel2 + // + this.splitContainer8.Panel2.Controls.Add(this.splitContainer9); + this.splitContainer8.Size = new System.Drawing.Size(485, 503); + this.splitContainer8.SplitterDistance = 54; + this.splitContainer8.TabIndex = 0; // // groupBox2 // - this.groupBox2.Controls.Add(this.label6); - this.groupBox2.Controls.Add(this.cmbx_ratioDenominator); - this.groupBox2.Controls.Add(this.cmbx_ratioNumerator); - this.groupBox2.Location = new System.Drawing.Point(58, 398); + this.groupBox2.Controls.Add(this.splitContainer15); + this.groupBox2.Dock = System.Windows.Forms.DockStyle.Fill; + this.groupBox2.Location = new System.Drawing.Point(0, 0); this.groupBox2.Name = "groupBox2"; - this.groupBox2.Size = new System.Drawing.Size(449, 59); - this.groupBox2.TabIndex = 13; + this.groupBox2.Size = new System.Drawing.Size(485, 54); + this.groupBox2.TabIndex = 27; this.groupBox2.TabStop = false; this.groupBox2.Text = "Ratio"; // + // splitContainer15 + // + this.splitContainer15.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer15.Location = new System.Drawing.Point(3, 16); + this.splitContainer15.Name = "splitContainer15"; + // + // splitContainer15.Panel1 + // + this.splitContainer15.Panel1.Controls.Add(this.cmbx_ratioNumerator); + // + // splitContainer15.Panel2 + // + this.splitContainer15.Panel2.Controls.Add(this.splitContainer16); + this.splitContainer15.Size = new System.Drawing.Size(479, 35); + this.splitContainer15.SplitterDistance = 203; + this.splitContainer15.TabIndex = 0; + // + // cmbx_ratioNumerator + // + this.cmbx_ratioNumerator.Dock = System.Windows.Forms.DockStyle.Fill; + this.cmbx_ratioNumerator.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; + this.cmbx_ratioNumerator.Enabled = false; + this.cmbx_ratioNumerator.FormattingEnabled = true; + this.cmbx_ratioNumerator.Location = new System.Drawing.Point(0, 0); + this.cmbx_ratioNumerator.Name = "cmbx_ratioNumerator"; + this.cmbx_ratioNumerator.Size = new System.Drawing.Size(203, 21); + this.cmbx_ratioNumerator.TabIndex = 4; + this.cmbx_ratioNumerator.SelectedIndexChanged += new System.EventHandler(this.cmbx_ratioNumerator_SelectedIndexChanged); + this.cmbx_ratioNumerator.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); + // + // splitContainer16 + // + this.splitContainer16.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer16.Location = new System.Drawing.Point(0, 0); + this.splitContainer16.Name = "splitContainer16"; + // + // splitContainer16.Panel1 + // + this.splitContainer16.Panel1.Controls.Add(this.label6); + // + // splitContainer16.Panel2 + // + this.splitContainer16.Panel2.Controls.Add(this.cmbx_ratioDenominator); + this.splitContainer16.Size = new System.Drawing.Size(272, 35); + this.splitContainer16.SplitterDistance = 53; + this.splitContainer16.TabIndex = 0; + // // label6 // this.label6.AutoSize = true; - this.label6.Location = new System.Drawing.Point(200, 20); + this.label6.Dock = System.Windows.Forms.DockStyle.Fill; + this.label6.Location = new System.Drawing.Point(0, 0); this.label6.Name = "label6"; this.label6.Size = new System.Drawing.Size(49, 13); - this.label6.TabIndex = 2; + this.label6.TabIndex = 6; this.label6.Text = "divide by"; // // cmbx_ratioDenominator // + this.cmbx_ratioDenominator.Dock = System.Windows.Forms.DockStyle.Fill; + this.cmbx_ratioDenominator.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_ratioDenominator.Enabled = false; this.cmbx_ratioDenominator.FormattingEnabled = true; - this.cmbx_ratioDenominator.Location = new System.Drawing.Point(281, 17); + this.cmbx_ratioDenominator.Location = new System.Drawing.Point(0, 0); this.cmbx_ratioDenominator.Name = "cmbx_ratioDenominator"; - this.cmbx_ratioDenominator.Size = new System.Drawing.Size(162, 21); - this.cmbx_ratioDenominator.TabIndex = 1; + this.cmbx_ratioDenominator.Size = new System.Drawing.Size(215, 21); + this.cmbx_ratioDenominator.TabIndex = 5; this.cmbx_ratioDenominator.SelectedIndexChanged += new System.EventHandler(this.cmbx_ratioDenominator_SelectedIndexChanged); + this.cmbx_ratioDenominator.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // - // cmbx_ratioNumerator + // splitContainer9 // - this.cmbx_ratioNumerator.Enabled = false; - this.cmbx_ratioNumerator.FormattingEnabled = true; - this.cmbx_ratioNumerator.Location = new System.Drawing.Point(17, 17); - this.cmbx_ratioNumerator.Name = "cmbx_ratioNumerator"; - this.cmbx_ratioNumerator.Size = new System.Drawing.Size(162, 21); - this.cmbx_ratioNumerator.TabIndex = 0; - this.cmbx_ratioNumerator.SelectedIndexChanged += new System.EventHandler(this.cmbx_ratioNumerator_SelectedIndexChanged); + this.splitContainer9.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer9.Location = new System.Drawing.Point(0, 0); + this.splitContainer9.Name = "splitContainer9"; + this.splitContainer9.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer9.Panel1 + // + this.splitContainer9.Panel1.Controls.Add(this.groupBox6); + // + // splitContainer9.Panel2 + // + this.splitContainer9.Panel2.Controls.Add(this.ct_relativeDifference); + this.splitContainer9.Size = new System.Drawing.Size(485, 445); + this.splitContainer9.SplitterDistance = 47; + this.splitContainer9.TabIndex = 0; + // + // groupBox6 + // + this.groupBox6.Controls.Add(this.label15); + this.groupBox6.Controls.Add(this.tb_FDR); + this.groupBox6.Controls.Add(this.label13); + this.groupBox6.Controls.Add(this.nud_Offset); + this.groupBox6.Controls.Add(this.label12); + this.groupBox6.Controls.Add(this.nud_sKnot_minFoldChange); + this.groupBox6.Dock = System.Windows.Forms.DockStyle.Fill; + this.groupBox6.Location = new System.Drawing.Point(0, 0); + this.groupBox6.Name = "groupBox6"; + this.groupBox6.Size = new System.Drawing.Size(485, 47); + this.groupBox6.TabIndex = 31; + this.groupBox6.TabStop = false; + this.groupBox6.Text = "FDR Determination Via Permutation"; + // + // label15 + // + this.label15.AutoSize = true; + this.label15.Location = new System.Drawing.Point(344, 22); + this.label15.Name = "label15"; + this.label15.Size = new System.Drawing.Size(29, 13); + this.label15.TabIndex = 7; + this.label15.Text = "FDR"; + // + // tb_FDR + // + this.tb_FDR.Location = new System.Drawing.Point(379, 19); + this.tb_FDR.Name = "tb_FDR"; + this.tb_FDR.Size = new System.Drawing.Size(64, 20); + this.tb_FDR.TabIndex = 6; + // + // label13 + // + this.label13.AutoSize = true; + this.label13.Location = new System.Drawing.Point(203, 22); + this.label13.Name = "label13"; + this.label13.Size = new System.Drawing.Size(35, 13); + this.label13.TabIndex = 3; + this.label13.Text = "Offset"; + // + // nud_Offset + // + this.nud_Offset.DecimalPlaces = 1; + this.nud_Offset.Increment = new decimal(new int[] { + 1, + 0, + 0, + 65536}); + this.nud_Offset.InterceptArrowKeys = false; + this.nud_Offset.Location = new System.Drawing.Point(244, 19); + this.nud_Offset.Maximum = new decimal(new int[] { + 5, + 0, + 0, + 0}); + this.nud_Offset.Name = "nud_Offset"; + this.nud_Offset.Size = new System.Drawing.Size(60, 20); + this.nud_Offset.TabIndex = 2; + this.nud_Offset.ValueChanged += new System.EventHandler(this.nud_Offset_ValueChanged); + // + // label12 + // + this.label12.AutoSize = true; + this.label12.Location = new System.Drawing.Point(7, 22); + this.label12.Name = "label12"; + this.label12.Size = new System.Drawing.Size(20, 13); + this.label12.TabIndex = 1; + this.label12.Text = "S0"; + // + // nud_sKnot_minFoldChange + // + this.nud_sKnot_minFoldChange.DecimalPlaces = 1; + this.nud_sKnot_minFoldChange.Increment = new decimal(new int[] { + 1, + 0, + 0, + 65536}); + this.nud_sKnot_minFoldChange.Location = new System.Drawing.Point(33, 20); + this.nud_sKnot_minFoldChange.Maximum = new decimal(new int[] { + 5, + 0, + 0, + 0}); + this.nud_sKnot_minFoldChange.Name = "nud_sKnot_minFoldChange"; + this.nud_sKnot_minFoldChange.Size = new System.Drawing.Size(66, 20); + this.nud_sKnot_minFoldChange.TabIndex = 0; + this.nud_sKnot_minFoldChange.ValueChanged += new System.EventHandler(this.nud_sKnot_minFoldChange_ValueChanged); + // + // ct_relativeDifference + // + chartArea3.Name = "ChartArea1"; + this.ct_relativeDifference.ChartAreas.Add(chartArea3); + this.ct_relativeDifference.Dock = System.Windows.Forms.DockStyle.Fill; + this.ct_relativeDifference.Location = new System.Drawing.Point(0, 0); + this.ct_relativeDifference.Name = "ct_relativeDifference"; + series4.ChartArea = "ChartArea1"; + series4.ChartType = System.Windows.Forms.DataVisualization.Charting.SeriesChartType.Point; + series4.Name = "obsVSexp"; + series5.ChartArea = "ChartArea1"; + series5.ChartType = System.Windows.Forms.DataVisualization.Charting.SeriesChartType.Line; + series5.Name = "positiveOffset"; + series6.ChartArea = "ChartArea1"; + series6.ChartType = System.Windows.Forms.DataVisualization.Charting.SeriesChartType.Line; + series6.Name = "negativeOffset"; + this.ct_relativeDifference.Series.Add(series4); + this.ct_relativeDifference.Series.Add(series5); + this.ct_relativeDifference.Series.Add(series6); + this.ct_relativeDifference.Size = new System.Drawing.Size(485, 394); + this.ct_relativeDifference.TabIndex = 30; + this.ct_relativeDifference.Text = "Observed vs. Expected Relative Difference"; + // + // splitContainer10 + // + this.splitContainer10.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer10.Location = new System.Drawing.Point(0, 0); + this.splitContainer10.Name = "splitContainer10"; + this.splitContainer10.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer10.Panel1 + // + this.splitContainer10.Panel1.Controls.Add(this.dgv_goAnalysis); + // + // splitContainer10.Panel2 + // + this.splitContainer10.Panel2.Controls.Add(this.splitContainer11); + this.splitContainer10.Size = new System.Drawing.Size(477, 861); + this.splitContainer10.SplitterDistance = 306; + this.splitContainer10.TabIndex = 0; + // + // dgv_goAnalysis + // + this.dgv_goAnalysis.ColumnHeadersHeightSizeMode = System.Windows.Forms.DataGridViewColumnHeadersHeightSizeMode.AutoSize; + this.dgv_goAnalysis.Dock = System.Windows.Forms.DockStyle.Fill; + this.dgv_goAnalysis.Location = new System.Drawing.Point(0, 0); + this.dgv_goAnalysis.Margin = new System.Windows.Forms.Padding(2); + this.dgv_goAnalysis.Name = "dgv_goAnalysis"; + this.dgv_goAnalysis.RowTemplate.Height = 28; + this.dgv_goAnalysis.Size = new System.Drawing.Size(477, 306); + this.dgv_goAnalysis.TabIndex = 22; + // + // splitContainer11 + // + this.splitContainer11.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer11.Location = new System.Drawing.Point(0, 0); + this.splitContainer11.Name = "splitContainer11"; + this.splitContainer11.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer11.Panel1 + // + this.splitContainer11.Panel1.Controls.Add(this.cmbx_goAspect); + // + // splitContainer11.Panel2 + // + this.splitContainer11.Panel2.Controls.Add(this.splitContainer12); + this.splitContainer11.Size = new System.Drawing.Size(477, 551); + this.splitContainer11.SplitterDistance = 30; + this.splitContainer11.TabIndex = 0; + // + // cmbx_goAspect + // + this.cmbx_goAspect.Dock = System.Windows.Forms.DockStyle.Fill; + this.cmbx_goAspect.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; + this.cmbx_goAspect.FormattingEnabled = true; + this.cmbx_goAspect.Location = new System.Drawing.Point(0, 0); + this.cmbx_goAspect.Margin = new System.Windows.Forms.Padding(2); + this.cmbx_goAspect.Name = "cmbx_goAspect"; + this.cmbx_goAspect.Size = new System.Drawing.Size(477, 21); + this.cmbx_goAspect.TabIndex = 23; + this.cmbx_goAspect.SelectedIndexChanged += new System.EventHandler(this.cmbx_goAspect_SelectedIndexChanged); + this.cmbx_goAspect.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); + // + // splitContainer12 + // + this.splitContainer12.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer12.Location = new System.Drawing.Point(0, 0); + this.splitContainer12.Name = "splitContainer12"; + this.splitContainer12.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer12.Panel1 + // + this.splitContainer12.Panel1.Controls.Add(this.splitContainer13); + // + // splitContainer12.Panel2 + // + this.splitContainer12.Panel2.Controls.Add(this.groupBox4); + this.splitContainer12.Size = new System.Drawing.Size(477, 517); + this.splitContainer12.SplitterDistance = 153; + this.splitContainer12.TabIndex = 0; + // + // splitContainer13 + // + this.splitContainer13.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer13.Location = new System.Drawing.Point(0, 0); + this.splitContainer13.Name = "splitContainer13"; + // + // splitContainer13.Panel1 + // + this.splitContainer13.Panel1.Controls.Add(this.gb_goThresholds); + // + // splitContainer13.Panel2 + // + this.splitContainer13.Panel2.Controls.Add(this.gb_backgroundGoTerms); + this.splitContainer13.Size = new System.Drawing.Size(477, 153); + this.splitContainer13.SplitterDistance = 175; + this.splitContainer13.TabIndex = 0; + // + // gb_goThresholds + // + this.gb_goThresholds.AutoSizeMode = System.Windows.Forms.AutoSizeMode.GrowAndShrink; + this.gb_goThresholds.Controls.Add(this.label3); + this.gb_goThresholds.Controls.Add(this.nud_intensity); + this.gb_goThresholds.Controls.Add(this.label2); + this.gb_goThresholds.Controls.Add(this.nud_ratio); + this.gb_goThresholds.Controls.Add(this.label1); + this.gb_goThresholds.Controls.Add(this.nud_FDR); + this.gb_goThresholds.Dock = System.Windows.Forms.DockStyle.Fill; + this.gb_goThresholds.Location = new System.Drawing.Point(0, 0); + this.gb_goThresholds.Margin = new System.Windows.Forms.Padding(2); + this.gb_goThresholds.Name = "gb_goThresholds"; + this.gb_goThresholds.Padding = new System.Windows.Forms.Padding(2); + this.gb_goThresholds.Size = new System.Drawing.Size(175, 153); + this.gb_goThresholds.TabIndex = 24; + this.gb_goThresholds.TabStop = false; + this.gb_goThresholds.Text = "GO Term Thresholds"; + // + // label3 + // + this.label3.AutoSize = true; + this.label3.Location = new System.Drawing.Point(9, 78); + this.label3.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); + this.label3.Name = "label3"; + this.label3.Size = new System.Drawing.Size(55, 13); + this.label3.TabIndex = 5; + this.label3.Text = "Intensity >"; + // + // nud_intensity + // + this.nud_intensity.Increment = new decimal(new int[] { + 1000, + 0, + 0, + 0}); + this.nud_intensity.Location = new System.Drawing.Point(71, 77); + this.nud_intensity.Margin = new System.Windows.Forms.Padding(2); + this.nud_intensity.Maximum = new decimal(new int[] { + -727379968, + 232, + 0, + 0}); + this.nud_intensity.Name = "nud_intensity"; + this.nud_intensity.Size = new System.Drawing.Size(80, 20); + this.nud_intensity.TabIndex = 4; + // + // label2 + // + this.label2.AutoSize = true; + this.label2.Location = new System.Drawing.Point(17, 52); + this.label2.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); + this.label2.Name = "label2"; + this.label2.Size = new System.Drawing.Size(45, 13); + this.label2.TabIndex = 3; + this.label2.Text = "|Ratio| >"; + // + // nud_ratio + // + this.nud_ratio.DecimalPlaces = 1; + this.nud_ratio.Increment = new decimal(new int[] { + 1, + 0, + 0, + 65536}); + this.nud_ratio.Location = new System.Drawing.Point(71, 51); + this.nud_ratio.Margin = new System.Windows.Forms.Padding(2); + this.nud_ratio.Maximum = new decimal(new int[] { + 50, + 0, + 0, + 0}); + this.nud_ratio.Minimum = new decimal(new int[] { + 50, + 0, + 0, + -2147483648}); + this.nud_ratio.Name = "nud_ratio"; + this.nud_ratio.Size = new System.Drawing.Size(80, 20); + this.nud_ratio.TabIndex = 2; + // + // label1 + // + this.label1.AutoSize = true; + this.label1.Location = new System.Drawing.Point(13, 26); + this.label1.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); + this.label1.Name = "label1"; + this.label1.Size = new System.Drawing.Size(38, 13); + this.label1.TabIndex = 1; + this.label1.Text = "FDR <"; + // + // nud_FDR + // + this.nud_FDR.DecimalPlaces = 2; + this.nud_FDR.Increment = new decimal(new int[] { + 1, + 0, + 0, + 131072}); + this.nud_FDR.Location = new System.Drawing.Point(71, 25); + this.nud_FDR.Margin = new System.Windows.Forms.Padding(2); + this.nud_FDR.Maximum = new decimal(new int[] { + 1, + 0, + 0, + 0}); + this.nud_FDR.Name = "nud_FDR"; + this.nud_FDR.Size = new System.Drawing.Size(80, 20); + this.nud_FDR.TabIndex = 0; // // gb_backgroundGoTerms // + this.gb_backgroundGoTerms.AutoSizeMode = System.Windows.Forms.AutoSizeMode.GrowAndShrink; this.gb_backgroundGoTerms.Controls.Add(this.rb_detectedSampleSet); this.gb_backgroundGoTerms.Controls.Add(this.btn_customBackgroundBrowse); this.gb_backgroundGoTerms.Controls.Add(this.tb_goTermCustomBackground); this.gb_backgroundGoTerms.Controls.Add(this.rb_customBackgroundSet); this.gb_backgroundGoTerms.Controls.Add(this.rb_allTheoreticalProteins); this.gb_backgroundGoTerms.Controls.Add(this.rb_quantifiedSampleSet); - this.gb_backgroundGoTerms.Location = new System.Drawing.Point(1186, 364); + this.gb_backgroundGoTerms.Dock = System.Windows.Forms.DockStyle.Fill; + this.gb_backgroundGoTerms.Location = new System.Drawing.Point(0, 0); this.gb_backgroundGoTerms.Name = "gb_backgroundGoTerms"; - this.gb_backgroundGoTerms.Size = new System.Drawing.Size(297, 146); - this.gb_backgroundGoTerms.TabIndex = 14; + this.gb_backgroundGoTerms.Size = new System.Drawing.Size(298, 153); + this.gb_backgroundGoTerms.TabIndex = 29; this.gb_backgroundGoTerms.TabStop = false; this.gb_backgroundGoTerms.Text = "Background GO Terms"; // // rb_detectedSampleSet // this.rb_detectedSampleSet.AutoSize = true; - this.rb_detectedSampleSet.Location = new System.Drawing.Point(23, 38); + this.rb_detectedSampleSet.Location = new System.Drawing.Point(23, 42); this.rb_detectedSampleSet.Name = "rb_detectedSampleSet"; this.rb_detectedSampleSet.Size = new System.Drawing.Size(126, 17); this.rb_detectedSampleSet.TabIndex = 19; @@ -502,8 +1037,9 @@ private void InitializeComponent() // // btn_customBackgroundBrowse // + this.btn_customBackgroundBrowse.Anchor = System.Windows.Forms.AnchorStyles.Left; this.btn_customBackgroundBrowse.Enabled = false; - this.btn_customBackgroundBrowse.Location = new System.Drawing.Point(212, 73); + this.btn_customBackgroundBrowse.Location = new System.Drawing.Point(212, 77); this.btn_customBackgroundBrowse.Name = "btn_customBackgroundBrowse"; this.btn_customBackgroundBrowse.Size = new System.Drawing.Size(75, 23); this.btn_customBackgroundBrowse.TabIndex = 18; @@ -514,7 +1050,7 @@ private void InitializeComponent() // tb_goTermCustomBackground // this.tb_goTermCustomBackground.Enabled = false; - this.tb_goTermCustomBackground.Location = new System.Drawing.Point(23, 76); + this.tb_goTermCustomBackground.Location = new System.Drawing.Point(23, 80); this.tb_goTermCustomBackground.Name = "tb_goTermCustomBackground"; this.tb_goTermCustomBackground.Size = new System.Drawing.Size(183, 20); this.tb_goTermCustomBackground.TabIndex = 17; @@ -522,19 +1058,19 @@ private void InitializeComponent() // rb_customBackgroundSet // this.rb_customBackgroundSet.AutoSize = true; - this.rb_customBackgroundSet.Location = new System.Drawing.Point(23, 58); + this.rb_customBackgroundSet.Location = new System.Drawing.Point(23, 62); this.rb_customBackgroundSet.Name = "rb_customBackgroundSet"; - this.rb_customBackgroundSet.Size = new System.Drawing.Size(77, 17); + this.rb_customBackgroundSet.Size = new System.Drawing.Size(126, 17); this.rb_customBackgroundSet.TabIndex = 2; this.rb_customBackgroundSet.TabStop = true; - this.rb_customBackgroundSet.Text = "Protein List"; + this.rb_customBackgroundSet.Text = "Protein List (Text File)"; this.rb_customBackgroundSet.UseVisualStyleBackColor = true; this.rb_customBackgroundSet.CheckedChanged += new System.EventHandler(this.rb_customBackgroundSet_CheckedChanged); // // rb_allTheoreticalProteins // this.rb_allTheoreticalProteins.AutoSize = true; - this.rb_allTheoreticalProteins.Location = new System.Drawing.Point(23, 98); + this.rb_allTheoreticalProteins.Location = new System.Drawing.Point(23, 102); this.rb_allTheoreticalProteins.Name = "rb_allTheoreticalProteins"; this.rb_allTheoreticalProteins.Size = new System.Drawing.Size(97, 17); this.rb_allTheoreticalProteins.TabIndex = 1; @@ -546,7 +1082,7 @@ private void InitializeComponent() // rb_quantifiedSampleSet // this.rb_quantifiedSampleSet.AutoSize = true; - this.rb_quantifiedSampleSet.Location = new System.Drawing.Point(23, 19); + this.rb_quantifiedSampleSet.Location = new System.Drawing.Point(23, 23); this.rb_quantifiedSampleSet.Name = "rb_quantifiedSampleSet"; this.rb_quantifiedSampleSet.Size = new System.Drawing.Size(130, 17); this.rb_quantifiedSampleSet.TabIndex = 0; @@ -557,146 +1093,245 @@ private void InitializeComponent() // // groupBox4 // - this.groupBox4.Controls.Add(this.label7); - this.groupBox4.Controls.Add(this.cmbx_nodeLabel); - this.groupBox4.Controls.Add(this.cb_geneCentric); - this.groupBox4.Controls.Add(this.label14); - this.groupBox4.Controls.Add(this.btn_buildFamiliesWithSignificantChange); - this.groupBox4.Controls.Add(this.cmbx_geneLabel); - this.groupBox4.Controls.Add(this.btn_buildFamiliesAllGO); - this.groupBox4.Controls.Add(this.label11); - this.groupBox4.Controls.Add(this.btn_buildFromSelectedGoTerms); - this.groupBox4.Controls.Add(this.cmbx_edgeLabel); - this.groupBox4.Controls.Add(this.groupBox5); - this.groupBox4.Controls.Add(this.label8); - this.groupBox4.Controls.Add(this.label9); - this.groupBox4.Controls.Add(this.label10); - this.groupBox4.Controls.Add(this.cmbx_nodeLabelPositioning); - this.groupBox4.Controls.Add(this.cmbx_nodeLayout); - this.groupBox4.Controls.Add(this.cmbx_colorScheme); - this.groupBox4.Controls.Add(this.lb_timeStamp); - this.groupBox4.Controls.Add(this.tb_recentTimeStamp); - this.groupBox4.Controls.Add(this.btn_buildSelectedQuantFamilies); - this.groupBox4.Controls.Add(this.btn_buildAllFamilies); - this.groupBox4.Controls.Add(this.label_tempFileFolder); - this.groupBox4.Controls.Add(this.tb_familyBuildFolder); - this.groupBox4.Controls.Add(this.btn_browseTempFolder); - this.groupBox4.Location = new System.Drawing.Point(1010, 518); + this.groupBox4.AutoSizeMode = System.Windows.Forms.AutoSizeMode.GrowAndShrink; + this.groupBox4.Controls.Add(this.splitContainer14); + this.groupBox4.Dock = System.Windows.Forms.DockStyle.Fill; + this.groupBox4.Location = new System.Drawing.Point(0, 0); this.groupBox4.Name = "groupBox4"; - this.groupBox4.Size = new System.Drawing.Size(473, 357); - this.groupBox4.TabIndex = 13; + this.groupBox4.Size = new System.Drawing.Size(477, 360); + this.groupBox4.TabIndex = 28; this.groupBox4.TabStop = false; this.groupBox4.Text = "Quantified Family Display with Cytoscape"; // - // label7 + // splitContainer14 + // + this.splitContainer14.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer14.Location = new System.Drawing.Point(3, 16); + this.splitContainer14.Name = "splitContainer14"; + // + // splitContainer14.Panel1 + // + this.splitContainer14.Panel1.Controls.Add(this.btn_buildFamiliesWithSignificantChange); + this.splitContainer14.Panel1.Controls.Add(this.btn_buildFamiliesAllGO); + this.splitContainer14.Panel1.Controls.Add(this.cb_geneCentric); + this.splitContainer14.Panel1.Controls.Add(this.btn_buildFromSelectedGoTerms); + this.splitContainer14.Panel1.Controls.Add(this.lb_timeStamp); + this.splitContainer14.Panel1.Controls.Add(this.tb_recentTimeStamp); + this.splitContainer14.Panel1.Controls.Add(this.btn_buildSelectedQuantFamilies); + this.splitContainer14.Panel1.Controls.Add(this.btn_buildAllFamilies); + this.splitContainer14.Panel1.Controls.Add(this.label_tempFileFolder); + this.splitContainer14.Panel1.Controls.Add(this.tb_familyBuildFolder); + this.splitContainer14.Panel1.Controls.Add(this.btn_browseTempFolder); + // + // splitContainer14.Panel2 + // + this.splitContainer14.Panel2.Controls.Add(this.label7); + this.splitContainer14.Panel2.Controls.Add(this.cmbx_nodeLabel); + this.splitContainer14.Panel2.Controls.Add(this.label14); + this.splitContainer14.Panel2.Controls.Add(this.cmbx_geneLabel); + this.splitContainer14.Panel2.Controls.Add(this.label11); + this.splitContainer14.Panel2.Controls.Add(this.cmbx_edgeLabel); + this.splitContainer14.Panel2.Controls.Add(this.groupBox5); + this.splitContainer14.Panel2.Controls.Add(this.label8); + this.splitContainer14.Panel2.Controls.Add(this.label9); + this.splitContainer14.Panel2.Controls.Add(this.label10); + this.splitContainer14.Panel2.Controls.Add(this.cmbx_nodeLabelPositioning); + this.splitContainer14.Panel2.Controls.Add(this.cmbx_nodeLayout); + this.splitContainer14.Panel2.Controls.Add(this.cmbx_colorScheme); + this.splitContainer14.Size = new System.Drawing.Size(471, 341); + this.splitContainer14.SplitterDistance = 267; + this.splitContainer14.TabIndex = 0; // - this.label7.AutoSize = true; - this.label7.BackColor = System.Drawing.SystemColors.Control; - this.label7.Location = new System.Drawing.Point(347, 107); - this.label7.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); - this.label7.Name = "label7"; - this.label7.Size = new System.Drawing.Size(117, 13); - this.label7.TabIndex = 64; - this.label7.Text = "Node Label Information"; + // btn_buildFamiliesWithSignificantChange // - // cmbx_nodeLabel + this.btn_buildFamiliesWithSignificantChange.Anchor = System.Windows.Forms.AnchorStyles.Left; + this.btn_buildFamiliesWithSignificantChange.Location = new System.Drawing.Point(4, 207); + this.btn_buildFamiliesWithSignificantChange.Name = "btn_buildFamiliesWithSignificantChange"; + this.btn_buildFamiliesWithSignificantChange.Size = new System.Drawing.Size(255, 23); + this.btn_buildFamiliesWithSignificantChange.TabIndex = 85; + this.btn_buildFamiliesWithSignificantChange.Text = "Build All Quantified Families w/ Significant Change"; + this.btn_buildFamiliesWithSignificantChange.UseVisualStyleBackColor = true; + this.btn_buildFamiliesWithSignificantChange.Click += new System.EventHandler(this.btn_buildFamiliesWithSignificantChange_Click); // - this.cmbx_nodeLabel.FormattingEnabled = true; - this.cmbx_nodeLabel.Location = new System.Drawing.Point(267, 101); - this.cmbx_nodeLabel.Name = "cmbx_nodeLabel"; - this.cmbx_nodeLabel.Size = new System.Drawing.Size(75, 21); - this.cmbx_nodeLabel.TabIndex = 63; + // btn_buildFamiliesAllGO + // + this.btn_buildFamiliesAllGO.Anchor = System.Windows.Forms.AnchorStyles.Left; + this.btn_buildFamiliesAllGO.Location = new System.Drawing.Point(4, 274); + this.btn_buildFamiliesAllGO.Name = "btn_buildFamiliesAllGO"; + this.btn_buildFamiliesAllGO.Size = new System.Drawing.Size(255, 23); + this.btn_buildFamiliesAllGO.TabIndex = 84; + this.btn_buildFamiliesAllGO.Text = "Build Families with All GO Terms Above Thresholds"; + this.btn_buildFamiliesAllGO.UseVisualStyleBackColor = true; + this.btn_buildFamiliesAllGO.Click += new System.EventHandler(this.btn_buildFamiliesAllGO_Click); // // cb_geneCentric // + this.cb_geneCentric.Anchor = System.Windows.Forms.AnchorStyles.Right; this.cb_geneCentric.AutoSize = true; this.cb_geneCentric.Checked = true; this.cb_geneCentric.CheckState = System.Windows.Forms.CheckState.Checked; - this.cb_geneCentric.Location = new System.Drawing.Point(283, 219); + this.cb_geneCentric.Location = new System.Drawing.Point(68, 127); this.cb_geneCentric.Name = "cb_geneCentric"; this.cb_geneCentric.Size = new System.Drawing.Size(154, 17); - this.cb_geneCentric.TabIndex = 62; + this.cb_geneCentric.TabIndex = 100; this.cb_geneCentric.Text = "Build Gene-Centric Families"; this.cb_geneCentric.UseVisualStyleBackColor = true; this.cb_geneCentric.CheckedChanged += new System.EventHandler(this.cb_geneCentric_CheckedChanged); // + // btn_buildFromSelectedGoTerms + // + this.btn_buildFromSelectedGoTerms.Anchor = System.Windows.Forms.AnchorStyles.Left; + this.btn_buildFromSelectedGoTerms.Location = new System.Drawing.Point(4, 303); + this.btn_buildFromSelectedGoTerms.Name = "btn_buildFromSelectedGoTerms"; + this.btn_buildFromSelectedGoTerms.Size = new System.Drawing.Size(255, 23); + this.btn_buildFromSelectedGoTerms.TabIndex = 81; + this.btn_buildFromSelectedGoTerms.Text = "Build Families with Selected GO Terms"; + this.btn_buildFromSelectedGoTerms.UseVisualStyleBackColor = true; + this.btn_buildFromSelectedGoTerms.Click += new System.EventHandler(this.btn_buildFromSelectedGoTerms_Click); + // + // lb_timeStamp + // + this.lb_timeStamp.Anchor = System.Windows.Forms.AnchorStyles.Left; + this.lb_timeStamp.AutoSize = true; + this.lb_timeStamp.Location = new System.Drawing.Point(22, 83); + this.lb_timeStamp.Name = "lb_timeStamp"; + this.lb_timeStamp.Size = new System.Drawing.Size(127, 13); + this.lb_timeStamp.TabIndex = 71; + this.lb_timeStamp.Text = "Most Recent Time Stamp"; + // + // tb_recentTimeStamp + // + this.tb_recentTimeStamp.Anchor = System.Windows.Forms.AnchorStyles.Left; + this.tb_recentTimeStamp.Location = new System.Drawing.Point(157, 80); + this.tb_recentTimeStamp.Name = "tb_recentTimeStamp"; + this.tb_recentTimeStamp.ReadOnly = true; + this.tb_recentTimeStamp.Size = new System.Drawing.Size(100, 20); + this.tb_recentTimeStamp.TabIndex = 70; + // + // btn_buildSelectedQuantFamilies + // + this.btn_buildSelectedQuantFamilies.Anchor = System.Windows.Forms.AnchorStyles.Left; + this.btn_buildSelectedQuantFamilies.Location = new System.Drawing.Point(4, 235); + this.btn_buildSelectedQuantFamilies.Name = "btn_buildSelectedQuantFamilies"; + this.btn_buildSelectedQuantFamilies.Size = new System.Drawing.Size(255, 23); + this.btn_buildSelectedQuantFamilies.TabIndex = 69; + this.btn_buildSelectedQuantFamilies.Text = "Build Selected Quantified Families"; + this.btn_buildSelectedQuantFamilies.UseVisualStyleBackColor = true; + this.btn_buildSelectedQuantFamilies.Click += new System.EventHandler(this.btn_buildSelectedQuantFamilies_Click); + // + // btn_buildAllFamilies + // + this.btn_buildAllFamilies.Anchor = System.Windows.Forms.AnchorStyles.Left; + this.btn_buildAllFamilies.Location = new System.Drawing.Point(4, 181); + this.btn_buildAllFamilies.Name = "btn_buildAllFamilies"; + this.btn_buildAllFamilies.Size = new System.Drawing.Size(255, 23); + this.btn_buildAllFamilies.TabIndex = 68; + this.btn_buildAllFamilies.Text = "Build All Quantified Families"; + this.btn_buildAllFamilies.UseVisualStyleBackColor = true; + this.btn_buildAllFamilies.Click += new System.EventHandler(this.btn_buildAllQuantifiedFamilies_Click); + // + // label_tempFileFolder + // + this.label_tempFileFolder.Anchor = System.Windows.Forms.AnchorStyles.Left; + this.label_tempFileFolder.AutoSize = true; + this.label_tempFileFolder.Location = new System.Drawing.Point(15, 24); + this.label_tempFileFolder.Name = "label_tempFileFolder"; + this.label_tempFileFolder.Size = new System.Drawing.Size(109, 13); + this.label_tempFileFolder.TabIndex = 67; + this.label_tempFileFolder.Text = "Folder for Family Build"; + // + // tb_familyBuildFolder + // + this.tb_familyBuildFolder.Anchor = System.Windows.Forms.AnchorStyles.Left; + this.tb_familyBuildFolder.Location = new System.Drawing.Point(157, 21); + this.tb_familyBuildFolder.Name = "tb_familyBuildFolder"; + this.tb_familyBuildFolder.Size = new System.Drawing.Size(100, 20); + this.tb_familyBuildFolder.TabIndex = 66; + this.tb_familyBuildFolder.TextChanged += new System.EventHandler(this.tb_familyBuildFolder_TextChanged); + // + // btn_browseTempFolder + // + this.btn_browseTempFolder.Anchor = System.Windows.Forms.AnchorStyles.Left; + this.btn_browseTempFolder.Location = new System.Drawing.Point(157, 51); + this.btn_browseTempFolder.Name = "btn_browseTempFolder"; + this.btn_browseTempFolder.Size = new System.Drawing.Size(100, 23); + this.btn_browseTempFolder.TabIndex = 65; + this.btn_browseTempFolder.Text = "Browse"; + this.btn_browseTempFolder.UseVisualStyleBackColor = true; + this.btn_browseTempFolder.Click += new System.EventHandler(this.btn_browseTempFolder_Click); + // + // label7 + // + this.label7.AutoSize = true; + this.label7.BackColor = System.Drawing.SystemColors.Control; + this.label7.Location = new System.Drawing.Point(81, 101); + this.label7.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); + this.label7.Name = "label7"; + this.label7.Size = new System.Drawing.Size(117, 13); + this.label7.TabIndex = 102; + this.label7.Text = "Node Label Information"; + // + // cmbx_nodeLabel + // + this.cmbx_nodeLabel.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; + this.cmbx_nodeLabel.FormattingEnabled = true; + this.cmbx_nodeLabel.Location = new System.Drawing.Point(4, 95); + this.cmbx_nodeLabel.Name = "cmbx_nodeLabel"; + this.cmbx_nodeLabel.Size = new System.Drawing.Size(75, 21); + this.cmbx_nodeLabel.TabIndex = 101; + this.cmbx_nodeLabel.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); + // // label14 // this.label14.AutoSize = true; this.label14.BackColor = System.Drawing.SystemColors.Control; - this.label14.Location = new System.Drawing.Point(347, 157); + this.label14.Location = new System.Drawing.Point(81, 151); this.label14.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); this.label14.Name = "label14"; this.label14.Size = new System.Drawing.Size(62, 13); - this.label14.TabIndex = 52; + this.label14.TabIndex = 96; this.label14.Text = "Gene Label"; // - // btn_buildFamiliesWithSignificantChange - // - this.btn_buildFamiliesWithSignificantChange.Location = new System.Drawing.Point(6, 215); - this.btn_buildFamiliesWithSignificantChange.Name = "btn_buildFamiliesWithSignificantChange"; - this.btn_buildFamiliesWithSignificantChange.Size = new System.Drawing.Size(255, 23); - this.btn_buildFamiliesWithSignificantChange.TabIndex = 62; - this.btn_buildFamiliesWithSignificantChange.Text = "Build All Quantified Families w/ Significant Change"; - this.btn_buildFamiliesWithSignificantChange.UseVisualStyleBackColor = true; - this.btn_buildFamiliesWithSignificantChange.Click += new System.EventHandler(this.btn_buildFamiliesWithSignificantChange_Click); - // // cmbx_geneLabel // + this.cmbx_geneLabel.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_geneLabel.FormattingEnabled = true; - this.cmbx_geneLabel.Location = new System.Drawing.Point(267, 154); + this.cmbx_geneLabel.Location = new System.Drawing.Point(4, 148); this.cmbx_geneLabel.Name = "cmbx_geneLabel"; this.cmbx_geneLabel.Size = new System.Drawing.Size(75, 21); - this.cmbx_geneLabel.TabIndex = 51; + this.cmbx_geneLabel.TabIndex = 93; this.cmbx_geneLabel.SelectedIndexChanged += new System.EventHandler(this.cmbx_geneLabel_SelectedIndexChanged); - // - // btn_buildFamiliesAllGO - // - this.btn_buildFamiliesAllGO.Location = new System.Drawing.Point(6, 282); - this.btn_buildFamiliesAllGO.Name = "btn_buildFamiliesAllGO"; - this.btn_buildFamiliesAllGO.Size = new System.Drawing.Size(255, 23); - this.btn_buildFamiliesAllGO.TabIndex = 61; - this.btn_buildFamiliesAllGO.Text = "Build Families with All GO Terms Above Thresholds"; - this.btn_buildFamiliesAllGO.UseVisualStyleBackColor = true; - this.btn_buildFamiliesAllGO.Click += new System.EventHandler(this.btn_buildFamiliesAllGO_Click); + this.cmbx_geneLabel.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // label11 // this.label11.AutoSize = true; - this.label11.BackColor = System.Drawing.SystemColors.Control; - this.label11.Location = new System.Drawing.Point(347, 133); - this.label11.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); - this.label11.Name = "label11"; - this.label11.Size = new System.Drawing.Size(116, 13); - this.label11.TabIndex = 60; - this.label11.Text = "Edge Label Information"; - // - // btn_buildFromSelectedGoTerms - // - this.btn_buildFromSelectedGoTerms.Location = new System.Drawing.Point(6, 311); - this.btn_buildFromSelectedGoTerms.Name = "btn_buildFromSelectedGoTerms"; - this.btn_buildFromSelectedGoTerms.Size = new System.Drawing.Size(255, 23); - this.btn_buildFromSelectedGoTerms.TabIndex = 57; - this.btn_buildFromSelectedGoTerms.Text = "Build Families with Selected GO Terms"; - this.btn_buildFromSelectedGoTerms.UseVisualStyleBackColor = true; - this.btn_buildFromSelectedGoTerms.Click += new System.EventHandler(this.btn_buildFromSelectedGoTerms_Click); + this.label11.BackColor = System.Drawing.SystemColors.Control; + this.label11.Location = new System.Drawing.Point(81, 127); + this.label11.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); + this.label11.Name = "label11"; + this.label11.Size = new System.Drawing.Size(116, 13); + this.label11.TabIndex = 99; + this.label11.Text = "Edge Label Information"; // // cmbx_edgeLabel // + this.cmbx_edgeLabel.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_edgeLabel.FormattingEnabled = true; - this.cmbx_edgeLabel.Location = new System.Drawing.Point(267, 127); + this.cmbx_edgeLabel.Location = new System.Drawing.Point(4, 121); this.cmbx_edgeLabel.Name = "cmbx_edgeLabel"; this.cmbx_edgeLabel.Size = new System.Drawing.Size(75, 21); - this.cmbx_edgeLabel.TabIndex = 59; + this.cmbx_edgeLabel.TabIndex = 98; + this.cmbx_edgeLabel.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // groupBox5 // this.groupBox5.Controls.Add(this.cb_boldLabel); this.groupBox5.Controls.Add(this.cb_redBorder); - this.groupBox5.Location = new System.Drawing.Point(267, 266); + this.groupBox5.Location = new System.Drawing.Point(0, 190); this.groupBox5.Name = "groupBox5"; this.groupBox5.Size = new System.Drawing.Size(200, 68); - this.groupBox5.TabIndex = 56; + this.groupBox5.TabIndex = 97; this.groupBox5.TabStop = false; this.groupBox5.Text = "Highlights for Significant Differences"; // @@ -722,308 +1357,216 @@ private void InitializeComponent() // // label8 // - this.label8.Anchor = System.Windows.Forms.AnchorStyles.Bottom; this.label8.AutoSize = true; this.label8.BackColor = System.Drawing.SystemColors.Control; - this.label8.Location = new System.Drawing.Point(347, 79); + this.label8.Location = new System.Drawing.Point(81, 73); this.label8.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); this.label8.Name = "label8"; this.label8.Size = new System.Drawing.Size(116, 13); - this.label8.TabIndex = 52; + this.label8.TabIndex = 95; this.label8.Text = "Node Label Positioning"; // // label9 // - this.label9.Anchor = System.Windows.Forms.AnchorStyles.Bottom; this.label9.AutoSize = true; this.label9.BackColor = System.Drawing.SystemColors.Control; - this.label9.Location = new System.Drawing.Point(347, 57); + this.label9.Location = new System.Drawing.Point(83, 51); this.label9.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); this.label9.Name = "label9"; this.label9.Size = new System.Drawing.Size(68, 13); - this.label9.TabIndex = 51; + this.label9.TabIndex = 94; this.label9.Text = "Node Layout"; // // label10 // - this.label10.Anchor = System.Windows.Forms.AnchorStyles.Bottom; this.label10.AutoSize = true; - this.label10.Location = new System.Drawing.Point(347, 29); + this.label10.Location = new System.Drawing.Point(83, 23); this.label10.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); this.label10.Name = "label10"; this.label10.Size = new System.Drawing.Size(102, 13); - this.label10.TabIndex = 50; + this.label10.TabIndex = 92; this.label10.Text = "Node Color Scheme"; // // cmbx_nodeLabelPositioning // + this.cmbx_nodeLabelPositioning.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_nodeLabelPositioning.FormattingEnabled = true; - this.cmbx_nodeLabelPositioning.Location = new System.Drawing.Point(267, 73); + this.cmbx_nodeLabelPositioning.Location = new System.Drawing.Point(4, 67); this.cmbx_nodeLabelPositioning.Name = "cmbx_nodeLabelPositioning"; this.cmbx_nodeLabelPositioning.Size = new System.Drawing.Size(75, 21); - this.cmbx_nodeLabelPositioning.TabIndex = 49; + this.cmbx_nodeLabelPositioning.TabIndex = 91; + this.cmbx_nodeLabelPositioning.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // cmbx_nodeLayout // + this.cmbx_nodeLayout.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_nodeLayout.FormattingEnabled = true; - this.cmbx_nodeLayout.Location = new System.Drawing.Point(267, 46); + this.cmbx_nodeLayout.Location = new System.Drawing.Point(4, 40); this.cmbx_nodeLayout.Name = "cmbx_nodeLayout"; this.cmbx_nodeLayout.Size = new System.Drawing.Size(75, 21); - this.cmbx_nodeLayout.TabIndex = 48; + this.cmbx_nodeLayout.TabIndex = 90; + this.cmbx_nodeLayout.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // cmbx_colorScheme // + this.cmbx_colorScheme.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_colorScheme.FormattingEnabled = true; - this.cmbx_colorScheme.Location = new System.Drawing.Point(267, 19); + this.cmbx_colorScheme.Location = new System.Drawing.Point(4, 13); this.cmbx_colorScheme.Name = "cmbx_colorScheme"; this.cmbx_colorScheme.Size = new System.Drawing.Size(75, 21); - this.cmbx_colorScheme.TabIndex = 47; - // - // lb_timeStamp - // - this.lb_timeStamp.AutoSize = true; - this.lb_timeStamp.Location = new System.Drawing.Point(24, 150); - this.lb_timeStamp.Name = "lb_timeStamp"; - this.lb_timeStamp.Size = new System.Drawing.Size(127, 13); - this.lb_timeStamp.TabIndex = 46; - this.lb_timeStamp.Text = "Most Recent Time Stamp"; - // - // tb_recentTimeStamp - // - this.tb_recentTimeStamp.Location = new System.Drawing.Point(159, 147); - this.tb_recentTimeStamp.Name = "tb_recentTimeStamp"; - this.tb_recentTimeStamp.ReadOnly = true; - this.tb_recentTimeStamp.Size = new System.Drawing.Size(100, 20); - this.tb_recentTimeStamp.TabIndex = 45; - // - // btn_buildSelectedQuantFamilies - // - this.btn_buildSelectedQuantFamilies.Location = new System.Drawing.Point(6, 243); - this.btn_buildSelectedQuantFamilies.Name = "btn_buildSelectedQuantFamilies"; - this.btn_buildSelectedQuantFamilies.Size = new System.Drawing.Size(255, 23); - this.btn_buildSelectedQuantFamilies.TabIndex = 44; - this.btn_buildSelectedQuantFamilies.Text = "Build Selected Quantified Families"; - this.btn_buildSelectedQuantFamilies.UseVisualStyleBackColor = true; - this.btn_buildSelectedQuantFamilies.Click += new System.EventHandler(this.btn_buildSelectedQuantFamilies_Click); - // - // btn_buildAllFamilies - // - this.btn_buildAllFamilies.Location = new System.Drawing.Point(6, 189); - this.btn_buildAllFamilies.Name = "btn_buildAllFamilies"; - this.btn_buildAllFamilies.Size = new System.Drawing.Size(255, 23); - this.btn_buildAllFamilies.TabIndex = 43; - this.btn_buildAllFamilies.Text = "Build All Quantified Families"; - this.btn_buildAllFamilies.UseVisualStyleBackColor = true; - this.btn_buildAllFamilies.Click += new System.EventHandler(this.btn_buildAllQuantifiedFamilies_Click); - // - // label_tempFileFolder - // - this.label_tempFileFolder.AutoSize = true; - this.label_tempFileFolder.Location = new System.Drawing.Point(17, 32); - this.label_tempFileFolder.Name = "label_tempFileFolder"; - this.label_tempFileFolder.Size = new System.Drawing.Size(109, 13); - this.label_tempFileFolder.TabIndex = 42; - this.label_tempFileFolder.Text = "Folder for Family Build"; - // - // tb_familyBuildFolder - // - this.tb_familyBuildFolder.Location = new System.Drawing.Point(159, 29); - this.tb_familyBuildFolder.Name = "tb_familyBuildFolder"; - this.tb_familyBuildFolder.Size = new System.Drawing.Size(100, 20); - this.tb_familyBuildFolder.TabIndex = 41; - this.tb_familyBuildFolder.TextChanged += new System.EventHandler(this.tb_familyBuildFolder_TextChanged); - // - // btn_browseTempFolder - // - this.btn_browseTempFolder.Location = new System.Drawing.Point(159, 59); - this.btn_browseTempFolder.Name = "btn_browseTempFolder"; - this.btn_browseTempFolder.Size = new System.Drawing.Size(100, 23); - this.btn_browseTempFolder.TabIndex = 40; - this.btn_browseTempFolder.Text = "Browse"; - this.btn_browseTempFolder.UseVisualStyleBackColor = true; - this.btn_browseTempFolder.Click += new System.EventHandler(this.btn_browseTempFolder_Click); - // - // ct_relativeDifference - // - chartArea3.Name = "ChartArea1"; - this.ct_relativeDifference.ChartAreas.Add(chartArea3); - this.ct_relativeDifference.Location = new System.Drawing.Point(523, 518); - this.ct_relativeDifference.Name = "ct_relativeDifference"; - series4.ChartArea = "ChartArea1"; - series4.ChartType = System.Windows.Forms.DataVisualization.Charting.SeriesChartType.Point; - series4.Name = "obsVSexp"; - series5.ChartArea = "ChartArea1"; - series5.ChartType = System.Windows.Forms.DataVisualization.Charting.SeriesChartType.Line; - series5.Name = "positiveOffset"; - series6.ChartArea = "ChartArea1"; - series6.ChartType = System.Windows.Forms.DataVisualization.Charting.SeriesChartType.Line; - series6.Name = "negativeOffset"; - this.ct_relativeDifference.Series.Add(series4); - this.ct_relativeDifference.Series.Add(series5); - this.ct_relativeDifference.Series.Add(series6); - this.ct_relativeDifference.Size = new System.Drawing.Size(476, 357); - this.ct_relativeDifference.TabIndex = 15; - this.ct_relativeDifference.Text = "Observed vs. Expected Relative Difference"; - // - // groupBox6 - // - this.groupBox6.Controls.Add(this.label15); - this.groupBox6.Controls.Add(this.tb_FDR); - this.groupBox6.Controls.Add(this.label13); - this.groupBox6.Controls.Add(this.nud_Offset); - this.groupBox6.Controls.Add(this.label12); - this.groupBox6.Controls.Add(this.nud_sKnot_minFoldChange); - this.groupBox6.Location = new System.Drawing.Point(513, 462); - this.groupBox6.Name = "groupBox6"; - this.groupBox6.Size = new System.Drawing.Size(486, 48); - this.groupBox6.TabIndex = 16; - this.groupBox6.TabStop = false; - this.groupBox6.Text = "FDR Determination Via Permutation"; - // - // label15 - // - this.label15.AutoSize = true; - this.label15.Location = new System.Drawing.Point(381, 22); - this.label15.Name = "label15"; - this.label15.Size = new System.Drawing.Size(29, 13); - this.label15.TabIndex = 7; - this.label15.Text = "FDR"; - // - // tb_FDR - // - this.tb_FDR.Location = new System.Drawing.Point(416, 19); - this.tb_FDR.Name = "tb_FDR"; - this.tb_FDR.Size = new System.Drawing.Size(64, 20); - this.tb_FDR.TabIndex = 6; - // - // label13 - // - this.label13.AutoSize = true; - this.label13.Location = new System.Drawing.Point(203, 22); - this.label13.Name = "label13"; - this.label13.Size = new System.Drawing.Size(35, 13); - this.label13.TabIndex = 3; - this.label13.Text = "Offset"; - // - // nud_Offset - // - this.nud_Offset.DecimalPlaces = 1; - this.nud_Offset.Increment = new decimal(new int[] { - 1, - 0, - 0, - 65536}); - this.nud_Offset.InterceptArrowKeys = false; - this.nud_Offset.Location = new System.Drawing.Point(258, 20); - this.nud_Offset.Maximum = new decimal(new int[] { - 5, - 0, - 0, - 0}); - this.nud_Offset.Name = "nud_Offset"; - this.nud_Offset.Size = new System.Drawing.Size(60, 20); - this.nud_Offset.TabIndex = 2; - this.nud_Offset.ValueChanged += new System.EventHandler(this.nud_Offset_ValueChanged); - // - // label12 - // - this.label12.AutoSize = true; - this.label12.Location = new System.Drawing.Point(7, 22); - this.label12.Name = "label12"; - this.label12.Size = new System.Drawing.Size(20, 13); - this.label12.TabIndex = 1; - this.label12.Text = "S0"; - // - // nud_sKnot_minFoldChange - // - this.nud_sKnot_minFoldChange.DecimalPlaces = 1; - this.nud_sKnot_minFoldChange.Increment = new decimal(new int[] { - 1, - 0, - 0, - 65536}); - this.nud_sKnot_minFoldChange.Location = new System.Drawing.Point(46, 20); - this.nud_sKnot_minFoldChange.Maximum = new decimal(new int[] { - 5, - 0, - 0, - 0}); - this.nud_sKnot_minFoldChange.Name = "nud_sKnot_minFoldChange"; - this.nud_sKnot_minFoldChange.Size = new System.Drawing.Size(66, 20); - this.nud_sKnot_minFoldChange.TabIndex = 0; - this.nud_sKnot_minFoldChange.ValueChanged += new System.EventHandler(this.nud_sKnot_minFoldChange_ValueChanged); - // - // btn_refreshCalculation - // - this.btn_refreshCalculation.Location = new System.Drawing.Point(517, 432); - this.btn_refreshCalculation.Name = "btn_refreshCalculation"; - this.btn_refreshCalculation.Size = new System.Drawing.Size(482, 23); - this.btn_refreshCalculation.TabIndex = 17; - this.btn_refreshCalculation.Text = "Refresh Calculations"; - this.btn_refreshCalculation.UseVisualStyleBackColor = true; - this.btn_refreshCalculation.Click += new System.EventHandler(this.btn_refreshCalculation_Click); + this.cmbx_colorScheme.TabIndex = 89; + this.cmbx_colorScheme.TextChanged += new System.EventHandler(this.cmbx_empty_TextChanged); // // Quantification // this.AutoScaleDimensions = new System.Drawing.SizeF(6F, 13F); this.AutoScaleMode = System.Windows.Forms.AutoScaleMode.Font; - this.ClientSize = new System.Drawing.Size(2099, 892); + this.AutoSize = true; + this.AutoSizeMode = System.Windows.Forms.AutoSizeMode.GrowAndShrink; + this.ClientSize = new System.Drawing.Size(1454, 861); this.ControlBox = false; - this.Controls.Add(this.btn_refreshCalculation); - this.Controls.Add(this.groupBox6); - this.Controls.Add(this.ct_relativeDifference); - this.Controls.Add(this.groupBox4); - this.Controls.Add(this.gb_backgroundGoTerms); - this.Controls.Add(this.groupBox2); - this.Controls.Add(this.groupBox1); - this.Controls.Add(this.ct_proteoformIntensities); - this.Controls.Add(this.gb_goThresholds); - this.Controls.Add(this.cmbx_goAspect); - this.Controls.Add(this.dgv_goAnalysis); - this.Controls.Add(this.ct_volcano_logFold_logP); - this.Controls.Add(this.gb_quantDataDisplaySelection); - this.Controls.Add(this.dgv_quantification_results); + this.Controls.Add(this.splitContainer1); this.Icon = ((System.Drawing.Icon)(resources.GetObject("$this.Icon"))); this.Margin = new System.Windows.Forms.Padding(2); this.Name = "Quantification"; this.Text = "Quantification"; + this.splitContainer1.Panel1.ResumeLayout(false); + this.splitContainer1.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer1)).EndInit(); + this.splitContainer1.ResumeLayout(false); + this.splitContainer3.Panel1.ResumeLayout(false); + this.splitContainer3.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer3)).EndInit(); + this.splitContainer3.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.dgv_quantification_results)).EndInit(); + this.splitContainer4.Panel1.ResumeLayout(false); + this.splitContainer4.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer4)).EndInit(); + this.splitContainer4.ResumeLayout(false); + this.groupBox1.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.nud_minObservations)).EndInit(); + this.splitContainer5.Panel1.ResumeLayout(false); + this.splitContainer5.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer5)).EndInit(); + this.splitContainer5.ResumeLayout(false); this.gb_quantDataDisplaySelection.ResumeLayout(false); this.gb_quantDataDisplaySelection.PerformLayout(); ((System.ComponentModel.ISupportInitialize)(this.nud_bkgdWidth)).EndInit(); ((System.ComponentModel.ISupportInitialize)(this.nud_bkgdShift)).EndInit(); + ((System.ComponentModel.ISupportInitialize)(this.ct_proteoformIntensities)).EndInit(); + this.splitContainer2.Panel1.ResumeLayout(false); + this.splitContainer2.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer2)).EndInit(); + this.splitContainer2.ResumeLayout(false); + this.splitContainer6.Panel1.ResumeLayout(false); + this.splitContainer6.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer6)).EndInit(); + this.splitContainer6.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.ct_volcano_logFold_logP)).EndInit(); + this.splitContainer7.Panel1.ResumeLayout(false); + this.splitContainer7.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer7)).EndInit(); + this.splitContainer7.ResumeLayout(false); + this.splitContainer8.Panel1.ResumeLayout(false); + this.splitContainer8.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer8)).EndInit(); + this.splitContainer8.ResumeLayout(false); + this.groupBox2.ResumeLayout(false); + this.splitContainer15.Panel1.ResumeLayout(false); + this.splitContainer15.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer15)).EndInit(); + this.splitContainer15.ResumeLayout(false); + this.splitContainer16.Panel1.ResumeLayout(false); + this.splitContainer16.Panel1.PerformLayout(); + this.splitContainer16.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer16)).EndInit(); + this.splitContainer16.ResumeLayout(false); + this.splitContainer9.Panel1.ResumeLayout(false); + this.splitContainer9.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer9)).EndInit(); + this.splitContainer9.ResumeLayout(false); + this.groupBox6.ResumeLayout(false); + this.groupBox6.PerformLayout(); + ((System.ComponentModel.ISupportInitialize)(this.nud_Offset)).EndInit(); + ((System.ComponentModel.ISupportInitialize)(this.nud_sKnot_minFoldChange)).EndInit(); + ((System.ComponentModel.ISupportInitialize)(this.ct_relativeDifference)).EndInit(); + this.splitContainer10.Panel1.ResumeLayout(false); + this.splitContainer10.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer10)).EndInit(); + this.splitContainer10.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.dgv_goAnalysis)).EndInit(); + this.splitContainer11.Panel1.ResumeLayout(false); + this.splitContainer11.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer11)).EndInit(); + this.splitContainer11.ResumeLayout(false); + this.splitContainer12.Panel1.ResumeLayout(false); + this.splitContainer12.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer12)).EndInit(); + this.splitContainer12.ResumeLayout(false); + this.splitContainer13.Panel1.ResumeLayout(false); + this.splitContainer13.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer13)).EndInit(); + this.splitContainer13.ResumeLayout(false); this.gb_goThresholds.ResumeLayout(false); this.gb_goThresholds.PerformLayout(); ((System.ComponentModel.ISupportInitialize)(this.nud_intensity)).EndInit(); ((System.ComponentModel.ISupportInitialize)(this.nud_ratio)).EndInit(); ((System.ComponentModel.ISupportInitialize)(this.nud_FDR)).EndInit(); - ((System.ComponentModel.ISupportInitialize)(this.ct_proteoformIntensities)).EndInit(); - this.groupBox1.ResumeLayout(false); - ((System.ComponentModel.ISupportInitialize)(this.nud_minObservations)).EndInit(); - this.groupBox2.ResumeLayout(false); - this.groupBox2.PerformLayout(); this.gb_backgroundGoTerms.ResumeLayout(false); this.gb_backgroundGoTerms.PerformLayout(); this.groupBox4.ResumeLayout(false); - this.groupBox4.PerformLayout(); + this.splitContainer14.Panel1.ResumeLayout(false); + this.splitContainer14.Panel1.PerformLayout(); + this.splitContainer14.Panel2.ResumeLayout(false); + this.splitContainer14.Panel2.PerformLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer14)).EndInit(); + this.splitContainer14.ResumeLayout(false); this.groupBox5.ResumeLayout(false); this.groupBox5.PerformLayout(); - ((System.ComponentModel.ISupportInitialize)(this.ct_relativeDifference)).EndInit(); - this.groupBox6.ResumeLayout(false); - this.groupBox6.PerformLayout(); - ((System.ComponentModel.ISupportInitialize)(this.nud_Offset)).EndInit(); - ((System.ComponentModel.ISupportInitialize)(this.nud_sKnot_minFoldChange)).EndInit(); this.ResumeLayout(false); } #endregion + private System.Windows.Forms.SplitContainer splitContainer1; + private System.Windows.Forms.SplitContainer splitContainer3; + private System.Windows.Forms.SplitContainer splitContainer4; + private System.Windows.Forms.SplitContainer splitContainer5; + private System.Windows.Forms.SplitContainer splitContainer2; + private System.Windows.Forms.SplitContainer splitContainer6; + private System.Windows.Forms.SplitContainer splitContainer7; + private System.Windows.Forms.SplitContainer splitContainer8; + private System.Windows.Forms.SplitContainer splitContainer9; + private System.Windows.Forms.SplitContainer splitContainer10; + private System.Windows.Forms.SplitContainer splitContainer11; + private System.Windows.Forms.SplitContainer splitContainer12; + private System.Windows.Forms.SplitContainer splitContainer13; private System.Windows.Forms.DataGridView dgv_quantification_results; + private System.Windows.Forms.GroupBox groupBox1; + private System.Windows.Forms.NumericUpDown nud_minObservations; + private System.Windows.Forms.ComboBox cmbx_observationsTypeRequired; private System.Windows.Forms.GroupBox gb_quantDataDisplaySelection; + private System.Windows.Forms.TextBox tb_stdevIntensity; + private System.Windows.Forms.TextBox tb_avgIntensity; + private System.Windows.Forms.Label label16; + private System.Windows.Forms.Label label17; + private System.Windows.Forms.Label label5; + private System.Windows.Forms.Label label4; + private System.Windows.Forms.NumericUpDown nud_bkgdWidth; + private System.Windows.Forms.NumericUpDown nud_bkgdShift; + public System.Windows.Forms.DataVisualization.Charting.Chart ct_proteoformIntensities; public System.Windows.Forms.DataVisualization.Charting.Chart ct_volcano_logFold_logP; + private System.Windows.Forms.Button btn_refreshCalculation; + private System.Windows.Forms.GroupBox groupBox2; + private System.Windows.Forms.GroupBox groupBox6; + private System.Windows.Forms.Label label15; + private System.Windows.Forms.TextBox tb_FDR; + private System.Windows.Forms.Label label13; + private System.Windows.Forms.NumericUpDown nud_Offset; + private System.Windows.Forms.Label label12; + private System.Windows.Forms.NumericUpDown nud_sKnot_minFoldChange; + public System.Windows.Forms.DataVisualization.Charting.Chart ct_relativeDifference; private System.Windows.Forms.DataGridView dgv_goAnalysis; private System.Windows.Forms.ComboBox cmbx_goAspect; private System.Windows.Forms.GroupBox gb_goThresholds; @@ -1033,22 +1576,19 @@ private void InitializeComponent() private System.Windows.Forms.NumericUpDown nud_ratio; private System.Windows.Forms.Label label1; private System.Windows.Forms.NumericUpDown nud_FDR; - public System.Windows.Forms.DataVisualization.Charting.Chart ct_proteoformIntensities; - private System.Windows.Forms.Label label5; - private System.Windows.Forms.Label label4; - private System.Windows.Forms.NumericUpDown nud_bkgdWidth; - private System.Windows.Forms.NumericUpDown nud_bkgdShift; - private System.Windows.Forms.GroupBox groupBox1; - private System.Windows.Forms.NumericUpDown nud_minObservations; - private System.Windows.Forms.ComboBox cmbx_observationsTypeRequired; - private System.Windows.Forms.GroupBox groupBox2; - private System.Windows.Forms.Label label6; - private System.Windows.Forms.ComboBox cmbx_ratioDenominator; - private System.Windows.Forms.ComboBox cmbx_ratioNumerator; private System.Windows.Forms.GroupBox gb_backgroundGoTerms; + private System.Windows.Forms.RadioButton rb_detectedSampleSet; + private System.Windows.Forms.Button btn_customBackgroundBrowse; + private System.Windows.Forms.TextBox tb_goTermCustomBackground; + private System.Windows.Forms.RadioButton rb_customBackgroundSet; private System.Windows.Forms.RadioButton rb_allTheoreticalProteins; private System.Windows.Forms.RadioButton rb_quantifiedSampleSet; private System.Windows.Forms.GroupBox groupBox4; + private System.Windows.Forms.SplitContainer splitContainer14; + private System.Windows.Forms.Button btn_buildFamiliesWithSignificantChange; + private System.Windows.Forms.Button btn_buildFamiliesAllGO; + private System.Windows.Forms.CheckBox cb_geneCentric; + private System.Windows.Forms.Button btn_buildFromSelectedGoTerms; private System.Windows.Forms.Label lb_timeStamp; private System.Windows.Forms.TextBox tb_recentTimeStamp; private System.Windows.Forms.Button btn_buildSelectedQuantFamilies; @@ -1056,37 +1596,25 @@ private void InitializeComponent() private System.Windows.Forms.Label label_tempFileFolder; private System.Windows.Forms.TextBox tb_familyBuildFolder; private System.Windows.Forms.Button btn_browseTempFolder; + private System.Windows.Forms.Label label7; + private System.Windows.Forms.ComboBox cmbx_nodeLabel; + private System.Windows.Forms.Label label14; + private System.Windows.Forms.ComboBox cmbx_geneLabel; + private System.Windows.Forms.Label label11; + private System.Windows.Forms.ComboBox cmbx_edgeLabel; + private System.Windows.Forms.GroupBox groupBox5; + private System.Windows.Forms.CheckBox cb_boldLabel; + private System.Windows.Forms.CheckBox cb_redBorder; private System.Windows.Forms.Label label8; private System.Windows.Forms.Label label9; private System.Windows.Forms.Label label10; private System.Windows.Forms.ComboBox cmbx_nodeLabelPositioning; private System.Windows.Forms.ComboBox cmbx_nodeLayout; private System.Windows.Forms.ComboBox cmbx_colorScheme; - private System.Windows.Forms.GroupBox groupBox5; - private System.Windows.Forms.CheckBox cb_boldLabel; - private System.Windows.Forms.CheckBox cb_redBorder; - private System.Windows.Forms.Button btn_buildFromSelectedGoTerms; - private System.Windows.Forms.Label label11; - private System.Windows.Forms.ComboBox cmbx_edgeLabel; - private System.Windows.Forms.Button btn_buildFamiliesAllGO; - public System.Windows.Forms.DataVisualization.Charting.Chart ct_relativeDifference; - private System.Windows.Forms.GroupBox groupBox6; - private System.Windows.Forms.Label label15; - private System.Windows.Forms.TextBox tb_FDR; - private System.Windows.Forms.Label label13; - private System.Windows.Forms.NumericUpDown nud_Offset; - private System.Windows.Forms.Label label12; - private System.Windows.Forms.NumericUpDown nud_sKnot_minFoldChange; - private System.Windows.Forms.Button btn_buildFamiliesWithSignificantChange; - private System.Windows.Forms.TextBox tb_goTermCustomBackground; - private System.Windows.Forms.RadioButton rb_customBackgroundSet; - private System.Windows.Forms.Button btn_customBackgroundBrowse; - private System.Windows.Forms.Label label14; - private System.Windows.Forms.ComboBox cmbx_geneLabel; - private System.Windows.Forms.CheckBox cb_geneCentric; - private System.Windows.Forms.Label label7; - private System.Windows.Forms.ComboBox cmbx_nodeLabel; - private System.Windows.Forms.RadioButton rb_detectedSampleSet; - private System.Windows.Forms.Button btn_refreshCalculation; + private System.Windows.Forms.SplitContainer splitContainer15; + private System.Windows.Forms.ComboBox cmbx_ratioNumerator; + private System.Windows.Forms.SplitContainer splitContainer16; + private System.Windows.Forms.Label label6; + private System.Windows.Forms.ComboBox cmbx_ratioDenominator; } } \ No newline at end of file diff --git a/ProteoformSuiteGUI/Quantification.cs b/ProteoformSuiteGUI/Quantification.cs index 85a6e8e6..6bc47b27 100755 --- a/ProteoformSuiteGUI/Quantification.cs +++ b/ProteoformSuiteGUI/Quantification.cs @@ -76,6 +76,8 @@ public void FillTablesAndCharts() plotObservedVsExpectedRelativeDifference(); DisplayUtility.FillDataGridView(dgv_quantification_results, SaveState.lollipop.qVals.Select(q => new DisplayQuantitativeValues(q))); DisplayQuantitativeValues.FormatGridView(dgv_quantification_results); + tb_avgIntensity.Text = Math.Round(SaveState.lollipop.selectAverageIntensity, 1).ToString(); + tb_stdevIntensity.Text = Math.Round(SaveState.lollipop.selectStDev, 3).ToString(); volcanoPlot(); plotBiorepIntensities(); updateGoTermsTable(); @@ -578,6 +580,8 @@ private void cb_geneCentric_CheckedChanged(object sender, EventArgs e) ProteoformCommunity.gene_centric_families = cb_geneCentric.Checked; } + private void cmbx_empty_TextChanged(object sender, EventArgs e) { } + #endregion Cytoscape Visualization Private Methods } diff --git a/ProteoformSuiteGUI/TheoreticalDatabase.Designer.cs b/ProteoformSuiteGUI/TheoreticalDatabase.Designer.cs index d1fae190..2774ab30 100644 --- a/ProteoformSuiteGUI/TheoreticalDatabase.Designer.cs +++ b/ProteoformSuiteGUI/TheoreticalDatabase.Designer.cs @@ -31,6 +31,7 @@ private void InitializeComponent() System.ComponentModel.ComponentResourceManager resources = new System.ComponentModel.ComponentResourceManager(typeof(TheoreticalDatabase)); this.splitContainer1 = new System.Windows.Forms.SplitContainer(); this.groupBox2 = new System.Windows.Forms.GroupBox(); + this.btn_amendModNames = new System.Windows.Forms.Button(); this.label5 = new System.Windows.Forms.Label(); this.tb_modTableFilter = new System.Windows.Forms.TextBox(); this.btn_loadModNames = new System.Windows.Forms.Button(); @@ -69,7 +70,6 @@ private void InitializeComponent() this.dgv_Database = new System.Windows.Forms.DataGridView(); this.dgv_unlocalizedModifications = new System.Windows.Forms.DataGridView(); this.splitter1 = new System.Windows.Forms.Splitter(); - this.btn_amendModNames = new System.Windows.Forms.Button(); ((System.ComponentModel.ISupportInitialize)(this.splitContainer1)).BeginInit(); this.splitContainer1.Panel1.SuspendLayout(); this.splitContainer1.Panel2.SuspendLayout(); @@ -150,6 +150,17 @@ private void InitializeComponent() this.groupBox2.TabStop = false; this.groupBox2.Text = "Modification Names"; // + // btn_amendModNames + // + this.btn_amendModNames.Font = new System.Drawing.Font("Microsoft Sans Serif", 8.25F); + this.btn_amendModNames.Location = new System.Drawing.Point(4, 49); + this.btn_amendModNames.Name = "btn_amendModNames"; + this.btn_amendModNames.Size = new System.Drawing.Size(189, 26); + this.btn_amendModNames.TabIndex = 56; + this.btn_amendModNames.Text = "Amend Stored Mod Names"; + this.btn_amendModNames.UseVisualStyleBackColor = true; + this.btn_amendModNames.Click += new System.EventHandler(this.btn_amendModNames_Click); + // // label5 // this.label5.AutoSize = true; @@ -270,13 +281,15 @@ private void InitializeComponent() // // cmb_loadTable // + this.cmb_loadTable.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmb_loadTable.Font = new System.Drawing.Font("Microsoft Sans Serif", 12F, System.Drawing.FontStyle.Regular, System.Drawing.GraphicsUnit.Point, ((byte)(0))); this.cmb_loadTable.FormattingEnabled = true; this.cmb_loadTable.Location = new System.Drawing.Point(11, 10); this.cmb_loadTable.Name = "cmb_loadTable"; this.cmb_loadTable.Size = new System.Drawing.Size(429, 28); this.cmb_loadTable.TabIndex = 34; - this.cmb_loadTable.SelectedIndexChanged += new System.EventHandler(this.cmb_loadTable_SelectedIndexChanged); + this.cmb_loadTable.SelectedIndexChanged += new System.EventHandler(this.cmbx_DisplayWhichDB_SelectedIndexChanged); + this.cmb_loadTable.TextChanged += new System.EventHandler(this.cmb_empty_TextChanged); // // dgv_loadFiles // @@ -381,6 +394,7 @@ private void InitializeComponent() // // cmbx_DisplayWhichDB // + this.cmbx_DisplayWhichDB.DropDownStyle = System.Windows.Forms.ComboBoxStyle.DropDownList; this.cmbx_DisplayWhichDB.FormattingEnabled = true; this.cmbx_DisplayWhichDB.Location = new System.Drawing.Point(9, 603); this.cmbx_DisplayWhichDB.Margin = new System.Windows.Forms.Padding(2); @@ -388,6 +402,7 @@ private void InitializeComponent() this.cmbx_DisplayWhichDB.Size = new System.Drawing.Size(201, 21); this.cmbx_DisplayWhichDB.TabIndex = 10; this.cmbx_DisplayWhichDB.SelectedIndexChanged += new System.EventHandler(this.cmbx_DisplayWhichDB_SelectedIndexChanged); + this.cmbx_DisplayWhichDB.TextChanged += new System.EventHandler(this.cmb_empty_TextChanged); // // label2 // @@ -588,17 +603,6 @@ private void InitializeComponent() this.splitter1.TabIndex = 1; this.splitter1.TabStop = false; // - // btn_amendModNames - // - this.btn_amendModNames.Font = new System.Drawing.Font("Microsoft Sans Serif", 8.25F); - this.btn_amendModNames.Location = new System.Drawing.Point(4, 49); - this.btn_amendModNames.Name = "btn_amendModNames"; - this.btn_amendModNames.Size = new System.Drawing.Size(189, 26); - this.btn_amendModNames.TabIndex = 56; - this.btn_amendModNames.Text = "Amend Stored Mod Names"; - this.btn_amendModNames.UseVisualStyleBackColor = true; - this.btn_amendModNames.Click += new System.EventHandler(this.btn_amendModNames_Click); - // // TheoreticalDatabase // this.AutoScaleDimensions = new System.Drawing.SizeF(6F, 13F); diff --git a/ProteoformSuiteGUI/TheoreticalDatabase.cs b/ProteoformSuiteGUI/TheoreticalDatabase.cs index b6afdc8b..d738d2aa 100644 --- a/ProteoformSuiteGUI/TheoreticalDatabase.cs +++ b/ProteoformSuiteGUI/TheoreticalDatabase.cs @@ -63,6 +63,8 @@ private void cmbx_DisplayWhichDB_SelectedIndexChanged(object sender, EventArgs e DisplayTheoreticalProteoform.FormatTheoreticalProteoformTable(dgv_Database); } + private void cmb_empty_TextChanged(object sender, EventArgs e) { } + #endregion Private Methods #region Public Methods @@ -244,12 +246,6 @@ private void cb_limitLargePtmSets_CheckedChanged(object sender, EventArgs e) #region LOAD DATABASES GRID VIEW Private Methods - private void cmb_loadTable_SelectedIndexChanged(object sender, EventArgs e) - { - if (cmb_loadTable.SelectedIndex != 2) MessageBox.Show("Use the Load Deconvolution Results page to load data."); - cmb_loadTable.SelectedIndex = 2; - } - private void dgv_loadFiles_DragDrop(object sender, DragEventArgs e) { drag_drop(e, cmb_loadTable, dgv_loadFiles); @@ -378,6 +374,5 @@ private void tb_modTableFilter_TextChanged(object sender, EventArgs e) } #endregion Modification Names Private Methods - } } diff --git a/ProteoformSuiteGUI/neuCodePairs.Designer.cs b/ProteoformSuiteGUI/neuCodePairs.Designer.cs index d8a63987..81a972ff 100644 --- a/ProteoformSuiteGUI/neuCodePairs.Designer.cs +++ b/ProteoformSuiteGUI/neuCodePairs.Designer.cs @@ -40,26 +40,50 @@ private void InitializeComponent() this.splitContainer2 = new System.Windows.Forms.SplitContainer(); this.splitContainer3 = new System.Windows.Forms.SplitContainer(); this.ct_LysineCount = new System.Windows.Forms.DataVisualization.Charting.Chart(); + this.splitContainer5 = new System.Windows.Forms.SplitContainer(); this.kCtAcceptRange = new System.Windows.Forms.GroupBox(); - this.KMaxAcceptable = new System.Windows.Forms.NumericUpDown(); + this.splitContainer21 = new System.Windows.Forms.SplitContainer(); + this.splitContainer22 = new System.Windows.Forms.SplitContainer(); + this.label1 = new System.Windows.Forms.Label(); this.label2 = new System.Windows.Forms.Label(); + this.splitContainer23 = new System.Windows.Forms.SplitContainer(); this.KMinAcceptable = new System.Windows.Forms.NumericUpDown(); - this.label1 = new System.Windows.Forms.Label(); - this.yMaxKCt = new System.Windows.Forms.NumericUpDown(); - this.xMaxKCt = new System.Windows.Forms.NumericUpDown(); - this.yMinKCt = new System.Windows.Forms.NumericUpDown(); - this.xMinKCt = new System.Windows.Forms.NumericUpDown(); + this.KMaxAcceptable = new System.Windows.Forms.NumericUpDown(); this.splitContainer4 = new System.Windows.Forms.SplitContainer(); this.ct_IntensityRatio = new System.Windows.Forms.DataVisualization.Charting.Chart(); + this.splitContainer9 = new System.Windows.Forms.SplitContainer(); this.groupBox1 = new System.Windows.Forms.GroupBox(); this.IRatMaxAcceptable = new System.Windows.Forms.NumericUpDown(); this.label3 = new System.Windows.Forms.Label(); this.IRatMinAcceptable = new System.Windows.Forms.NumericUpDown(); this.label4 = new System.Windows.Forms.Label(); + this.groupBox3 = new System.Windows.Forms.GroupBox(); + this.splitContainer10 = new System.Windows.Forms.SplitContainer(); + this.splitContainer11 = new System.Windows.Forms.SplitContainer(); + this.splitContainer17 = new System.Windows.Forms.SplitContainer(); + this.splitContainer18 = new System.Windows.Forms.SplitContainer(); this.yMaxIRat = new System.Windows.Forms.NumericUpDown(); + this.splitContainer12 = new System.Windows.Forms.SplitContainer(); + this.xMinIRat = new System.Windows.Forms.NumericUpDown(); this.xMaxIRat = new System.Windows.Forms.NumericUpDown(); + this.splitContainer19 = new System.Windows.Forms.SplitContainer(); + this.splitContainer20 = new System.Windows.Forms.SplitContainer(); this.yMinIRat = new System.Windows.Forms.NumericUpDown(); - this.xMinIRat = new System.Windows.Forms.NumericUpDown(); + this.groupBox2 = new System.Windows.Forms.GroupBox(); + this.splitContainer6 = new System.Windows.Forms.SplitContainer(); + this.splitContainer7 = new System.Windows.Forms.SplitContainer(); + this.splitContainer13 = new System.Windows.Forms.SplitContainer(); + this.splitContainer14 = new System.Windows.Forms.SplitContainer(); + this.yMaxKCt = new System.Windows.Forms.NumericUpDown(); + this.splitContainer8 = new System.Windows.Forms.SplitContainer(); + this.xMinKCt = new System.Windows.Forms.NumericUpDown(); + this.xMaxKCt = new System.Windows.Forms.NumericUpDown(); + this.splitContainer15 = new System.Windows.Forms.SplitContainer(); + this.splitContainer16 = new System.Windows.Forms.SplitContainer(); + this.yMinKCt = new System.Windows.Forms.NumericUpDown(); + this.splitContainer24 = new System.Windows.Forms.SplitContainer(); + this.splitContainer25 = new System.Windows.Forms.SplitContainer(); + this.splitContainer26 = new System.Windows.Forms.SplitContainer(); ((System.ComponentModel.ISupportInitialize)(this.splitContainer1)).BeginInit(); this.splitContainer1.Panel1.SuspendLayout(); this.splitContainer1.Panel2.SuspendLayout(); @@ -74,25 +98,107 @@ private void InitializeComponent() this.splitContainer3.Panel2.SuspendLayout(); this.splitContainer3.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.ct_LysineCount)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer5)).BeginInit(); + this.splitContainer5.Panel1.SuspendLayout(); + this.splitContainer5.Panel2.SuspendLayout(); + this.splitContainer5.SuspendLayout(); this.kCtAcceptRange.SuspendLayout(); - ((System.ComponentModel.ISupportInitialize)(this.KMaxAcceptable)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer21)).BeginInit(); + this.splitContainer21.Panel1.SuspendLayout(); + this.splitContainer21.Panel2.SuspendLayout(); + this.splitContainer21.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer22)).BeginInit(); + this.splitContainer22.Panel1.SuspendLayout(); + this.splitContainer22.Panel2.SuspendLayout(); + this.splitContainer22.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer23)).BeginInit(); + this.splitContainer23.Panel1.SuspendLayout(); + this.splitContainer23.Panel2.SuspendLayout(); + this.splitContainer23.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.KMinAcceptable)).BeginInit(); - ((System.ComponentModel.ISupportInitialize)(this.yMaxKCt)).BeginInit(); - ((System.ComponentModel.ISupportInitialize)(this.xMaxKCt)).BeginInit(); - ((System.ComponentModel.ISupportInitialize)(this.yMinKCt)).BeginInit(); - ((System.ComponentModel.ISupportInitialize)(this.xMinKCt)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.KMaxAcceptable)).BeginInit(); ((System.ComponentModel.ISupportInitialize)(this.splitContainer4)).BeginInit(); this.splitContainer4.Panel1.SuspendLayout(); this.splitContainer4.Panel2.SuspendLayout(); this.splitContainer4.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.ct_IntensityRatio)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer9)).BeginInit(); + this.splitContainer9.Panel1.SuspendLayout(); + this.splitContainer9.Panel2.SuspendLayout(); + this.splitContainer9.SuspendLayout(); this.groupBox1.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.IRatMaxAcceptable)).BeginInit(); ((System.ComponentModel.ISupportInitialize)(this.IRatMinAcceptable)).BeginInit(); + this.groupBox3.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer10)).BeginInit(); + this.splitContainer10.Panel1.SuspendLayout(); + this.splitContainer10.Panel2.SuspendLayout(); + this.splitContainer10.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer11)).BeginInit(); + this.splitContainer11.Panel1.SuspendLayout(); + this.splitContainer11.Panel2.SuspendLayout(); + this.splitContainer11.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer17)).BeginInit(); + this.splitContainer17.Panel2.SuspendLayout(); + this.splitContainer17.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer18)).BeginInit(); + this.splitContainer18.Panel1.SuspendLayout(); + this.splitContainer18.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.yMaxIRat)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer12)).BeginInit(); + this.splitContainer12.Panel1.SuspendLayout(); + this.splitContainer12.Panel2.SuspendLayout(); + this.splitContainer12.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.xMinIRat)).BeginInit(); ((System.ComponentModel.ISupportInitialize)(this.xMaxIRat)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer19)).BeginInit(); + this.splitContainer19.Panel2.SuspendLayout(); + this.splitContainer19.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer20)).BeginInit(); + this.splitContainer20.Panel1.SuspendLayout(); + this.splitContainer20.SuspendLayout(); ((System.ComponentModel.ISupportInitialize)(this.yMinIRat)).BeginInit(); - ((System.ComponentModel.ISupportInitialize)(this.xMinIRat)).BeginInit(); + this.groupBox2.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer6)).BeginInit(); + this.splitContainer6.Panel1.SuspendLayout(); + this.splitContainer6.Panel2.SuspendLayout(); + this.splitContainer6.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer7)).BeginInit(); + this.splitContainer7.Panel1.SuspendLayout(); + this.splitContainer7.Panel2.SuspendLayout(); + this.splitContainer7.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer13)).BeginInit(); + this.splitContainer13.Panel2.SuspendLayout(); + this.splitContainer13.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer14)).BeginInit(); + this.splitContainer14.Panel1.SuspendLayout(); + this.splitContainer14.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.yMaxKCt)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer8)).BeginInit(); + this.splitContainer8.Panel1.SuspendLayout(); + this.splitContainer8.Panel2.SuspendLayout(); + this.splitContainer8.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.xMinKCt)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.xMaxKCt)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer15)).BeginInit(); + this.splitContainer15.Panel2.SuspendLayout(); + this.splitContainer15.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer16)).BeginInit(); + this.splitContainer16.Panel1.SuspendLayout(); + this.splitContainer16.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.yMinKCt)).BeginInit(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer24)).BeginInit(); + this.splitContainer24.Panel1.SuspendLayout(); + this.splitContainer24.Panel2.SuspendLayout(); + this.splitContainer24.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer25)).BeginInit(); + this.splitContainer25.Panel1.SuspendLayout(); + this.splitContainer25.Panel2.SuspendLayout(); + this.splitContainer25.SuspendLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer26)).BeginInit(); + this.splitContainer26.Panel1.SuspendLayout(); + this.splitContainer26.Panel2.SuspendLayout(); + this.splitContainer26.SuspendLayout(); this.SuspendLayout(); // // splitContainer1 @@ -133,7 +239,6 @@ private void InitializeComponent() this.splitContainer2.BorderStyle = System.Windows.Forms.BorderStyle.Fixed3D; this.splitContainer2.Dock = System.Windows.Forms.DockStyle.Fill; this.splitContainer2.Location = new System.Drawing.Point(0, 0); - this.splitContainer2.Margin = new System.Windows.Forms.Padding(2); this.splitContainer2.Name = "splitContainer2"; // // splitContainer2.Panel1 @@ -144,8 +249,7 @@ private void InitializeComponent() // this.splitContainer2.Panel2.Controls.Add(this.splitContainer4); this.splitContainer2.Size = new System.Drawing.Size(1595, 507); - this.splitContainer2.SplitterDistance = 742; - this.splitContainer2.SplitterWidth = 3; + this.splitContainer2.SplitterDistance = 741; this.splitContainer2.TabIndex = 0; // // splitContainer3 @@ -163,16 +267,12 @@ private void InitializeComponent() // // splitContainer3.Panel2 // - this.splitContainer3.Panel2.Controls.Add(this.kCtAcceptRange); - this.splitContainer3.Panel2.Controls.Add(this.yMaxKCt); - this.splitContainer3.Panel2.Controls.Add(this.xMaxKCt); - this.splitContainer3.Panel2.Controls.Add(this.yMinKCt); - this.splitContainer3.Panel2.Controls.Add(this.xMinKCt); + this.splitContainer3.Panel2.Controls.Add(this.splitContainer5); this.splitContainer3.Panel2MinSize = 75; - this.splitContainer3.Size = new System.Drawing.Size(742, 507); - this.splitContainer3.SplitterDistance = 317; + this.splitContainer3.Size = new System.Drawing.Size(741, 507); + this.splitContainer3.SplitterDistance = 397; this.splitContainer3.SplitterWidth = 3; - this.splitContainer3.TabIndex = 0; + this.splitContainer3.TabIndex = 2; // // ct_LysineCount // @@ -190,64 +290,124 @@ private void InitializeComponent() series1.Legend = "Legend1"; series1.Name = "lysineCount"; this.ct_LysineCount.Series.Add(series1); - this.ct_LysineCount.Size = new System.Drawing.Size(738, 313); + this.ct_LysineCount.Size = new System.Drawing.Size(737, 393); this.ct_LysineCount.TabIndex = 0; this.ct_LysineCount.Text = "chart1"; + this.ct_LysineCount.MouseClick += new System.Windows.Forms.MouseEventHandler(this.ct_LysineCount_MouseClick); + // + // splitContainer5 + // + this.splitContainer5.Location = new System.Drawing.Point(0, 0); + this.splitContainer5.Name = "splitContainer5"; + // + // splitContainer5.Panel1 + // + this.splitContainer5.Panel1.Controls.Add(this.kCtAcceptRange); + // + // splitContainer5.Panel2 + // + this.splitContainer5.Panel2.Controls.Add(this.groupBox2); + this.splitContainer5.Size = new System.Drawing.Size(738, 103); + this.splitContainer5.SplitterDistance = 358; + this.splitContainer5.TabIndex = 0; // // kCtAcceptRange // - this.kCtAcceptRange.Controls.Add(this.KMaxAcceptable); - this.kCtAcceptRange.Controls.Add(this.label2); - this.kCtAcceptRange.Controls.Add(this.KMinAcceptable); - this.kCtAcceptRange.Controls.Add(this.label1); - this.kCtAcceptRange.Location = new System.Drawing.Point(7, 8); + this.kCtAcceptRange.AutoSize = true; + this.kCtAcceptRange.Controls.Add(this.splitContainer21); + this.kCtAcceptRange.Dock = System.Windows.Forms.DockStyle.Fill; + this.kCtAcceptRange.Location = new System.Drawing.Point(0, 0); this.kCtAcceptRange.Margin = new System.Windows.Forms.Padding(2); this.kCtAcceptRange.Name = "kCtAcceptRange"; this.kCtAcceptRange.Padding = new System.Windows.Forms.Padding(2); - this.kCtAcceptRange.Size = new System.Drawing.Size(152, 65); - this.kCtAcceptRange.TabIndex = 4; + this.kCtAcceptRange.Size = new System.Drawing.Size(358, 103); + this.kCtAcceptRange.TabIndex = 12; this.kCtAcceptRange.TabStop = false; this.kCtAcceptRange.Text = "Acceptable Lysine Counts"; // - // KMaxAcceptable + // splitContainer21 // - this.KMaxAcceptable.DecimalPlaces = 2; - this.KMaxAcceptable.Increment = new decimal(new int[] { - 1, - 0, - 0, - 65536}); - this.KMaxAcceptable.Location = new System.Drawing.Point(55, 40); - this.KMaxAcceptable.Margin = new System.Windows.Forms.Padding(2); - this.KMaxAcceptable.Minimum = new decimal(new int[] { - 100, - 0, - 0, - -2147483648}); - this.KMaxAcceptable.Name = "KMaxAcceptable"; - this.KMaxAcceptable.Size = new System.Drawing.Size(80, 20); - this.KMaxAcceptable.TabIndex = 7; - this.KMaxAcceptable.ValueChanged += new System.EventHandler(this.KMaxAcceptable_ValueChanged); + this.splitContainer21.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer21.Location = new System.Drawing.Point(2, 15); + this.splitContainer21.Name = "splitContainer21"; + // + // splitContainer21.Panel1 + // + this.splitContainer21.Panel1.Controls.Add(this.splitContainer22); + // + // splitContainer21.Panel2 + // + this.splitContainer21.Panel2.Controls.Add(this.splitContainer23); + this.splitContainer21.Size = new System.Drawing.Size(354, 86); + this.splitContainer21.SplitterDistance = 115; + this.splitContainer21.TabIndex = 1; + // + // splitContainer22 + // + this.splitContainer22.Location = new System.Drawing.Point(0, 0); + this.splitContainer22.Name = "splitContainer22"; + this.splitContainer22.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer22.Panel1 + // + this.splitContainer22.Panel1.Controls.Add(this.label1); + // + // splitContainer22.Panel2 + // + this.splitContainer22.Panel2.Controls.Add(this.label2); + this.splitContainer22.Size = new System.Drawing.Size(116, 86); + this.splitContainer22.SplitterDistance = 25; + this.splitContainer22.TabIndex = 0; + // + // label1 + // + this.label1.AutoSize = true; + this.label1.Dock = System.Windows.Forms.DockStyle.Fill; + this.label1.Location = new System.Drawing.Point(0, 0); + this.label1.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); + this.label1.Name = "label1"; + this.label1.Size = new System.Drawing.Size(34, 13); + this.label1.TabIndex = 9; + this.label1.Text = "K-Min"; // // label2 // this.label2.AutoSize = true; - this.label2.Location = new System.Drawing.Point(5, 44); + this.label2.Dock = System.Windows.Forms.DockStyle.Fill; + this.label2.Location = new System.Drawing.Point(0, 0); this.label2.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); this.label2.Name = "label2"; this.label2.Size = new System.Drawing.Size(37, 13); - this.label2.TabIndex = 6; + this.label2.TabIndex = 11; this.label2.Text = "K-Max"; // + // splitContainer23 + // + this.splitContainer23.Location = new System.Drawing.Point(0, 0); + this.splitContainer23.Name = "splitContainer23"; + this.splitContainer23.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer23.Panel1 + // + this.splitContainer23.Panel1.Controls.Add(this.KMinAcceptable); + // + // splitContainer23.Panel2 + // + this.splitContainer23.Panel2.Controls.Add(this.KMaxAcceptable); + this.splitContainer23.Size = new System.Drawing.Size(234, 86); + this.splitContainer23.SplitterDistance = 26; + this.splitContainer23.TabIndex = 0; + // // KMinAcceptable // this.KMinAcceptable.DecimalPlaces = 2; + this.KMinAcceptable.Dock = System.Windows.Forms.DockStyle.Fill; this.KMinAcceptable.Increment = new decimal(new int[] { 1, 0, 0, 65536}); - this.KMinAcceptable.Location = new System.Drawing.Point(55, 16); + this.KMinAcceptable.Location = new System.Drawing.Point(0, 0); this.KMinAcceptable.Margin = new System.Windows.Forms.Padding(2); this.KMinAcceptable.Minimum = new decimal(new int[] { 100, @@ -255,77 +415,30 @@ private void InitializeComponent() 0, -2147483648}); this.KMinAcceptable.Name = "KMinAcceptable"; - this.KMinAcceptable.Size = new System.Drawing.Size(80, 20); - this.KMinAcceptable.TabIndex = 5; + this.KMinAcceptable.Size = new System.Drawing.Size(234, 20); + this.KMinAcceptable.TabIndex = 12; this.KMinAcceptable.ValueChanged += new System.EventHandler(this.KMinAcceptable_ValueChanged); // - // label1 - // - this.label1.AutoSize = true; - this.label1.Location = new System.Drawing.Point(5, 19); - this.label1.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); - this.label1.Name = "label1"; - this.label1.Size = new System.Drawing.Size(34, 13); - this.label1.TabIndex = 0; - this.label1.Text = "K-Min"; - // - // yMaxKCt - // - this.yMaxKCt.Location = new System.Drawing.Point(250, 8); - this.yMaxKCt.Margin = new System.Windows.Forms.Padding(2); - this.yMaxKCt.Name = "yMaxKCt"; - this.yMaxKCt.Size = new System.Drawing.Size(80, 20); - this.yMaxKCt.TabIndex = 0; - this.yMaxKCt.ValueChanged += new System.EventHandler(this.yMaxKCt_ValueChanged); - // - // xMaxKCt - // - this.xMaxKCt.DecimalPlaces = 1; - this.xMaxKCt.Increment = new decimal(new int[] { - 1, - 0, - 0, - 65536}); - this.xMaxKCt.Location = new System.Drawing.Point(295, 29); - this.xMaxKCt.Margin = new System.Windows.Forms.Padding(2); - this.xMaxKCt.Name = "xMaxKCt"; - this.xMaxKCt.Size = new System.Drawing.Size(80, 20); - this.xMaxKCt.TabIndex = 3; - this.xMaxKCt.ValueChanged += new System.EventHandler(this.xMaxKCt_ValueChanged); - // - // yMinKCt - // - this.yMinKCt.Location = new System.Drawing.Point(259, 48); - this.yMinKCt.Margin = new System.Windows.Forms.Padding(2); - this.yMinKCt.Minimum = new decimal(new int[] { - 100, - 0, - 0, - -2147483648}); - this.yMinKCt.Name = "yMinKCt"; - this.yMinKCt.Size = new System.Drawing.Size(80, 20); - this.yMinKCt.TabIndex = 1; - this.yMinKCt.ValueChanged += new System.EventHandler(this.yMinKCt_ValueChanged); - // - // xMinKCt + // KMaxAcceptable // - this.xMinKCt.DecimalPlaces = 1; - this.xMinKCt.Increment = new decimal(new int[] { + this.KMaxAcceptable.DecimalPlaces = 2; + this.KMaxAcceptable.Dock = System.Windows.Forms.DockStyle.Fill; + this.KMaxAcceptable.Increment = new decimal(new int[] { 1, 0, 0, 65536}); - this.xMinKCt.Location = new System.Drawing.Point(211, 29); - this.xMinKCt.Margin = new System.Windows.Forms.Padding(2); - this.xMinKCt.Minimum = new decimal(new int[] { + this.KMaxAcceptable.Location = new System.Drawing.Point(0, 0); + this.KMaxAcceptable.Margin = new System.Windows.Forms.Padding(2); + this.KMaxAcceptable.Minimum = new decimal(new int[] { 100, 0, 0, -2147483648}); - this.xMinKCt.Name = "xMinKCt"; - this.xMinKCt.Size = new System.Drawing.Size(80, 20); - this.xMinKCt.TabIndex = 2; - this.xMinKCt.ValueChanged += new System.EventHandler(this.xMinKCt_ValueChanged); + this.KMaxAcceptable.Name = "KMaxAcceptable"; + this.KMaxAcceptable.Size = new System.Drawing.Size(234, 20); + this.KMaxAcceptable.TabIndex = 12; + this.KMaxAcceptable.ValueChanged += new System.EventHandler(this.KMaxAcceptable_ValueChanged); // // splitContainer4 // @@ -342,16 +455,12 @@ private void InitializeComponent() // // splitContainer4.Panel2 // - this.splitContainer4.Panel2.Controls.Add(this.groupBox1); - this.splitContainer4.Panel2.Controls.Add(this.yMaxIRat); - this.splitContainer4.Panel2.Controls.Add(this.xMaxIRat); - this.splitContainer4.Panel2.Controls.Add(this.yMinIRat); - this.splitContainer4.Panel2.Controls.Add(this.xMinIRat); + this.splitContainer4.Panel2.Controls.Add(this.splitContainer9); this.splitContainer4.Panel2MinSize = 75; this.splitContainer4.Size = new System.Drawing.Size(850, 507); - this.splitContainer4.SplitterDistance = 321; + this.splitContainer4.SplitterDistance = 396; this.splitContainer4.SplitterWidth = 3; - this.splitContainer4.TabIndex = 0; + this.splitContainer4.TabIndex = 4; // // ct_IntensityRatio // @@ -369,34 +478,51 @@ private void InitializeComponent() series2.Legend = "Legend1"; series2.Name = "intensityRatio"; this.ct_IntensityRatio.Series.Add(series2); - this.ct_IntensityRatio.Size = new System.Drawing.Size(846, 317); + this.ct_IntensityRatio.Size = new System.Drawing.Size(846, 392); this.ct_IntensityRatio.TabIndex = 1; this.ct_IntensityRatio.Text = "chart1"; + this.ct_IntensityRatio.MouseClick += new System.Windows.Forms.MouseEventHandler(this.ct_IntensityRatio_MouseClick); + // + // splitContainer9 + // + this.splitContainer9.Location = new System.Drawing.Point(0, 0); + this.splitContainer9.Name = "splitContainer9"; + // + // splitContainer9.Panel1 + // + this.splitContainer9.Panel1.Controls.Add(this.groupBox1); + // + // splitContainer9.Panel2 + // + this.splitContainer9.Panel2.Controls.Add(this.groupBox3); + this.splitContainer9.Size = new System.Drawing.Size(846, 104); + this.splitContainer9.SplitterDistance = 423; + this.splitContainer9.TabIndex = 0; // // groupBox1 // - this.groupBox1.Controls.Add(this.IRatMaxAcceptable); - this.groupBox1.Controls.Add(this.label3); - this.groupBox1.Controls.Add(this.IRatMinAcceptable); - this.groupBox1.Controls.Add(this.label4); - this.groupBox1.Location = new System.Drawing.Point(13, 6); + this.groupBox1.AutoSize = true; + this.groupBox1.Controls.Add(this.splitContainer24); + this.groupBox1.Dock = System.Windows.Forms.DockStyle.Fill; + this.groupBox1.Location = new System.Drawing.Point(0, 0); this.groupBox1.Margin = new System.Windows.Forms.Padding(2); this.groupBox1.Name = "groupBox1"; this.groupBox1.Padding = new System.Windows.Forms.Padding(2); - this.groupBox1.Size = new System.Drawing.Size(163, 65); - this.groupBox1.TabIndex = 8; + this.groupBox1.Size = new System.Drawing.Size(423, 104); + this.groupBox1.TabIndex = 13; this.groupBox1.TabStop = false; this.groupBox1.Text = "Acceptable Intensity Ratios"; // // IRatMaxAcceptable // this.IRatMaxAcceptable.DecimalPlaces = 2; + this.IRatMaxAcceptable.Dock = System.Windows.Forms.DockStyle.Fill; this.IRatMaxAcceptable.Increment = new decimal(new int[] { 5, 0, 0, 131072}); - this.IRatMaxAcceptable.Location = new System.Drawing.Point(69, 40); + this.IRatMaxAcceptable.Location = new System.Drawing.Point(0, 0); this.IRatMaxAcceptable.Margin = new System.Windows.Forms.Padding(2); this.IRatMaxAcceptable.Minimum = new decimal(new int[] { 100, @@ -404,14 +530,15 @@ private void InitializeComponent() 0, -2147483648}); this.IRatMaxAcceptable.Name = "IRatMaxAcceptable"; - this.IRatMaxAcceptable.Size = new System.Drawing.Size(80, 20); + this.IRatMaxAcceptable.Size = new System.Drawing.Size(234, 20); this.IRatMaxAcceptable.TabIndex = 7; this.IRatMaxAcceptable.ValueChanged += new System.EventHandler(this.IRatMaxAcceptable_ValueChanged); // // label3 // this.label3.AutoSize = true; - this.label3.Location = new System.Drawing.Point(5, 44); + this.label3.Dock = System.Windows.Forms.DockStyle.Fill; + this.label3.Location = new System.Drawing.Point(0, 0); this.label3.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); this.label3.Name = "label3"; this.label3.Size = new System.Drawing.Size(61, 13); @@ -421,12 +548,13 @@ private void InitializeComponent() // IRatMinAcceptable // this.IRatMinAcceptable.DecimalPlaces = 2; + this.IRatMinAcceptable.Dock = System.Windows.Forms.DockStyle.Fill; this.IRatMinAcceptable.Increment = new decimal(new int[] { 5, 0, 0, 131072}); - this.IRatMinAcceptable.Location = new System.Drawing.Point(69, 16); + this.IRatMinAcceptable.Location = new System.Drawing.Point(0, 0); this.IRatMinAcceptable.Margin = new System.Windows.Forms.Padding(2); this.IRatMinAcceptable.Minimum = new decimal(new int[] { 100, @@ -434,29 +562,140 @@ private void InitializeComponent() 0, -2147483648}); this.IRatMinAcceptable.Name = "IRatMinAcceptable"; - this.IRatMinAcceptable.Size = new System.Drawing.Size(80, 20); + this.IRatMinAcceptable.Size = new System.Drawing.Size(234, 20); this.IRatMinAcceptable.TabIndex = 5; this.IRatMinAcceptable.ValueChanged += new System.EventHandler(this.IRatMinAcceptable_ValueChanged); // // label4 // this.label4.AutoSize = true; - this.label4.Location = new System.Drawing.Point(5, 19); + this.label4.Dock = System.Windows.Forms.DockStyle.Fill; + this.label4.Location = new System.Drawing.Point(0, 0); this.label4.Margin = new System.Windows.Forms.Padding(2, 0, 2, 0); this.label4.Name = "label4"; this.label4.Size = new System.Drawing.Size(58, 13); this.label4.TabIndex = 0; this.label4.Text = "I-Ratio Min"; // + // groupBox3 + // + this.groupBox3.AutoSize = true; + this.groupBox3.Controls.Add(this.splitContainer10); + this.groupBox3.Dock = System.Windows.Forms.DockStyle.Fill; + this.groupBox3.Location = new System.Drawing.Point(0, 0); + this.groupBox3.Name = "groupBox3"; + this.groupBox3.Size = new System.Drawing.Size(419, 104); + this.groupBox3.TabIndex = 0; + this.groupBox3.TabStop = false; + this.groupBox3.Text = "Axis Limits"; + // + // splitContainer10 + // + this.splitContainer10.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer10.Location = new System.Drawing.Point(3, 16); + this.splitContainer10.Name = "splitContainer10"; + this.splitContainer10.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer10.Panel1 + // + this.splitContainer10.Panel1.Controls.Add(this.splitContainer11); + // + // splitContainer10.Panel2 + // + this.splitContainer10.Panel2.Controls.Add(this.splitContainer19); + this.splitContainer10.Size = new System.Drawing.Size(413, 85); + this.splitContainer10.SplitterDistance = 56; + this.splitContainer10.TabIndex = 1; + // + // splitContainer11 + // + this.splitContainer11.Location = new System.Drawing.Point(0, 0); + this.splitContainer11.Name = "splitContainer11"; + this.splitContainer11.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer11.Panel1 + // + this.splitContainer11.Panel1.Controls.Add(this.splitContainer17); + // + // splitContainer11.Panel2 + // + this.splitContainer11.Panel2.Controls.Add(this.splitContainer12); + this.splitContainer11.Size = new System.Drawing.Size(413, 56); + this.splitContainer11.SplitterDistance = 27; + this.splitContainer11.TabIndex = 0; + // + // splitContainer17 + // + this.splitContainer17.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer17.Location = new System.Drawing.Point(0, 0); + this.splitContainer17.Name = "splitContainer17"; + // + // splitContainer17.Panel2 + // + this.splitContainer17.Panel2.Controls.Add(this.splitContainer18); + this.splitContainer17.Size = new System.Drawing.Size(413, 27); + this.splitContainer17.SplitterDistance = 137; + this.splitContainer17.TabIndex = 0; + // + // splitContainer18 + // + this.splitContainer18.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer18.Location = new System.Drawing.Point(0, 0); + this.splitContainer18.Name = "splitContainer18"; + // + // splitContainer18.Panel1 + // + this.splitContainer18.Panel1.Controls.Add(this.yMaxIRat); + this.splitContainer18.Size = new System.Drawing.Size(272, 27); + this.splitContainer18.SplitterDistance = 140; + this.splitContainer18.TabIndex = 0; + // // yMaxIRat // - this.yMaxIRat.Location = new System.Drawing.Point(303, 2); + this.yMaxIRat.Location = new System.Drawing.Point(0, 0); this.yMaxIRat.Margin = new System.Windows.Forms.Padding(2); this.yMaxIRat.Name = "yMaxIRat"; - this.yMaxIRat.Size = new System.Drawing.Size(80, 20); - this.yMaxIRat.TabIndex = 4; + this.yMaxIRat.Size = new System.Drawing.Size(140, 20); + this.yMaxIRat.TabIndex = 11; this.yMaxIRat.ValueChanged += new System.EventHandler(this.yMaxIRat_ValueChanged); // + // splitContainer12 + // + this.splitContainer12.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer12.Location = new System.Drawing.Point(0, 0); + this.splitContainer12.Name = "splitContainer12"; + // + // splitContainer12.Panel1 + // + this.splitContainer12.Panel1.Controls.Add(this.xMinIRat); + // + // splitContainer12.Panel2 + // + this.splitContainer12.Panel2.Controls.Add(this.xMaxIRat); + this.splitContainer12.Size = new System.Drawing.Size(413, 25); + this.splitContainer12.SplitterDistance = 205; + this.splitContainer12.TabIndex = 0; + // + // xMinIRat + // + this.xMinIRat.DecimalPlaces = 2; + this.xMinIRat.Increment = new decimal(new int[] { + 5, + 0, + 0, + 131072}); + this.xMinIRat.Location = new System.Drawing.Point(0, 0); + this.xMinIRat.Margin = new System.Windows.Forms.Padding(2); + this.xMinIRat.Minimum = new decimal(new int[] { + 100, + 0, + 0, + -2147483648}); + this.xMinIRat.Name = "xMinIRat"; + this.xMinIRat.Size = new System.Drawing.Size(205, 20); + this.xMinIRat.TabIndex = 12; + this.xMinIRat.ValueChanged += new System.EventHandler(this.xMinIRat_ValueChanged); + // // xMaxIRat // this.xMaxIRat.DecimalPlaces = 2; @@ -465,16 +704,42 @@ private void InitializeComponent() 0, 0, 131072}); - this.xMaxIRat.Location = new System.Drawing.Point(347, 23); + this.xMaxIRat.Location = new System.Drawing.Point(0, 0); this.xMaxIRat.Margin = new System.Windows.Forms.Padding(2); this.xMaxIRat.Name = "xMaxIRat"; - this.xMaxIRat.Size = new System.Drawing.Size(80, 20); - this.xMaxIRat.TabIndex = 7; + this.xMaxIRat.Size = new System.Drawing.Size(204, 20); + this.xMaxIRat.TabIndex = 13; this.xMaxIRat.ValueChanged += new System.EventHandler(this.xMaxIRat_ValueChanged); // + // splitContainer19 + // + this.splitContainer19.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer19.Location = new System.Drawing.Point(0, 0); + this.splitContainer19.Name = "splitContainer19"; + // + // splitContainer19.Panel2 + // + this.splitContainer19.Panel2.Controls.Add(this.splitContainer20); + this.splitContainer19.Size = new System.Drawing.Size(413, 25); + this.splitContainer19.SplitterDistance = 137; + this.splitContainer19.TabIndex = 0; + // + // splitContainer20 + // + this.splitContainer20.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer20.Location = new System.Drawing.Point(0, 0); + this.splitContainer20.Name = "splitContainer20"; + // + // splitContainer20.Panel1 + // + this.splitContainer20.Panel1.Controls.Add(this.yMinIRat); + this.splitContainer20.Size = new System.Drawing.Size(272, 25); + this.splitContainer20.SplitterDistance = 145; + this.splitContainer20.TabIndex = 0; + // // yMinIRat // - this.yMinIRat.Location = new System.Drawing.Point(312, 42); + this.yMinIRat.Location = new System.Drawing.Point(0, 0); this.yMinIRat.Margin = new System.Windows.Forms.Padding(2); this.yMinIRat.Minimum = new decimal(new int[] { 100, @@ -482,29 +747,238 @@ private void InitializeComponent() 0, -2147483648}); this.yMinIRat.Name = "yMinIRat"; - this.yMinIRat.Size = new System.Drawing.Size(80, 20); - this.yMinIRat.TabIndex = 5; + this.yMinIRat.Size = new System.Drawing.Size(145, 20); + this.yMinIRat.TabIndex = 12; this.yMinIRat.ValueChanged += new System.EventHandler(this.yMinIRat_ValueChanged); // - // xMinIRat + // groupBox2 // - this.xMinIRat.DecimalPlaces = 2; - this.xMinIRat.Increment = new decimal(new int[] { - 5, + this.groupBox2.AutoSize = true; + this.groupBox2.Controls.Add(this.splitContainer6); + this.groupBox2.Dock = System.Windows.Forms.DockStyle.Fill; + this.groupBox2.Location = new System.Drawing.Point(0, 0); + this.groupBox2.Name = "groupBox2"; + this.groupBox2.Size = new System.Drawing.Size(376, 103); + this.groupBox2.TabIndex = 1; + this.groupBox2.TabStop = false; + this.groupBox2.Text = "Axis Limits"; + // + // splitContainer6 + // + this.splitContainer6.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer6.Location = new System.Drawing.Point(3, 16); + this.splitContainer6.Name = "splitContainer6"; + this.splitContainer6.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer6.Panel1 + // + this.splitContainer6.Panel1.Controls.Add(this.splitContainer7); + // + // splitContainer6.Panel2 + // + this.splitContainer6.Panel2.Controls.Add(this.splitContainer15); + this.splitContainer6.Size = new System.Drawing.Size(370, 84); + this.splitContainer6.SplitterDistance = 55; + this.splitContainer6.TabIndex = 0; + // + // splitContainer7 + // + this.splitContainer7.Location = new System.Drawing.Point(0, 0); + this.splitContainer7.Name = "splitContainer7"; + this.splitContainer7.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer7.Panel1 + // + this.splitContainer7.Panel1.Controls.Add(this.splitContainer13); + // + // splitContainer7.Panel2 + // + this.splitContainer7.Panel2.Controls.Add(this.splitContainer8); + this.splitContainer7.Size = new System.Drawing.Size(370, 55); + this.splitContainer7.SplitterDistance = 26; + this.splitContainer7.TabIndex = 0; + // + // splitContainer13 + // + this.splitContainer13.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer13.Location = new System.Drawing.Point(0, 0); + this.splitContainer13.Name = "splitContainer13"; + // + // splitContainer13.Panel2 + // + this.splitContainer13.Panel2.Controls.Add(this.splitContainer14); + this.splitContainer13.Size = new System.Drawing.Size(370, 26); + this.splitContainer13.SplitterDistance = 123; + this.splitContainer13.TabIndex = 0; + // + // splitContainer14 + // + this.splitContainer14.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer14.Location = new System.Drawing.Point(0, 0); + this.splitContainer14.Name = "splitContainer14"; + // + // splitContainer14.Panel1 + // + this.splitContainer14.Panel1.Controls.Add(this.yMaxKCt); + this.splitContainer14.Size = new System.Drawing.Size(243, 26); + this.splitContainer14.SplitterDistance = 116; + this.splitContainer14.TabIndex = 0; + // + // yMaxKCt + // + this.yMaxKCt.Dock = System.Windows.Forms.DockStyle.Fill; + this.yMaxKCt.Location = new System.Drawing.Point(0, 0); + this.yMaxKCt.Margin = new System.Windows.Forms.Padding(2); + this.yMaxKCt.Name = "yMaxKCt"; + this.yMaxKCt.Size = new System.Drawing.Size(116, 20); + this.yMaxKCt.TabIndex = 7; + this.yMaxKCt.ValueChanged += new System.EventHandler(this.yMaxKCt_ValueChanged); + // + // splitContainer8 + // + this.splitContainer8.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer8.Location = new System.Drawing.Point(0, 0); + this.splitContainer8.Name = "splitContainer8"; + // + // splitContainer8.Panel1 + // + this.splitContainer8.Panel1.Controls.Add(this.xMinKCt); + // + // splitContainer8.Panel2 + // + this.splitContainer8.Panel2.Controls.Add(this.xMaxKCt); + this.splitContainer8.Size = new System.Drawing.Size(370, 25); + this.splitContainer8.SplitterDistance = 185; + this.splitContainer8.TabIndex = 0; + // + // xMinKCt + // + this.xMinKCt.DecimalPlaces = 1; + this.xMinKCt.Dock = System.Windows.Forms.DockStyle.Fill; + this.xMinKCt.Increment = new decimal(new int[] { + 1, 0, 0, - 131072}); - this.xMinIRat.Location = new System.Drawing.Point(263, 23); - this.xMinIRat.Margin = new System.Windows.Forms.Padding(2); - this.xMinIRat.Minimum = new decimal(new int[] { + 65536}); + this.xMinKCt.Location = new System.Drawing.Point(0, 0); + this.xMinKCt.Margin = new System.Windows.Forms.Padding(2); + this.xMinKCt.Minimum = new decimal(new int[] { 100, 0, 0, -2147483648}); - this.xMinIRat.Name = "xMinIRat"; - this.xMinIRat.Size = new System.Drawing.Size(80, 20); - this.xMinIRat.TabIndex = 6; - this.xMinIRat.ValueChanged += new System.EventHandler(this.xMinIRat_ValueChanged); + this.xMinKCt.Name = "xMinKCt"; + this.xMinKCt.Size = new System.Drawing.Size(185, 20); + this.xMinKCt.TabIndex = 8; + this.xMinKCt.ValueChanged += new System.EventHandler(this.xMinKCt_ValueChanged); + // + // xMaxKCt + // + this.xMaxKCt.DecimalPlaces = 1; + this.xMaxKCt.Dock = System.Windows.Forms.DockStyle.Fill; + this.xMaxKCt.Increment = new decimal(new int[] { + 1, + 0, + 0, + 65536}); + this.xMaxKCt.Location = new System.Drawing.Point(0, 0); + this.xMaxKCt.Margin = new System.Windows.Forms.Padding(2); + this.xMaxKCt.Name = "xMaxKCt"; + this.xMaxKCt.Size = new System.Drawing.Size(181, 20); + this.xMaxKCt.TabIndex = 9; + this.xMaxKCt.ValueChanged += new System.EventHandler(this.xMaxKCt_ValueChanged); + // + // splitContainer15 + // + this.splitContainer15.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer15.Location = new System.Drawing.Point(0, 0); + this.splitContainer15.Name = "splitContainer15"; + // + // splitContainer15.Panel2 + // + this.splitContainer15.Panel2.Controls.Add(this.splitContainer16); + this.splitContainer15.Size = new System.Drawing.Size(370, 25); + this.splitContainer15.SplitterDistance = 123; + this.splitContainer15.TabIndex = 0; + // + // splitContainer16 + // + this.splitContainer16.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer16.Location = new System.Drawing.Point(0, 0); + this.splitContainer16.Name = "splitContainer16"; + // + // splitContainer16.Panel1 + // + this.splitContainer16.Panel1.Controls.Add(this.yMinKCt); + this.splitContainer16.Size = new System.Drawing.Size(243, 25); + this.splitContainer16.SplitterDistance = 118; + this.splitContainer16.TabIndex = 0; + // + // yMinKCt + // + this.yMinKCt.Dock = System.Windows.Forms.DockStyle.Fill; + this.yMinKCt.Location = new System.Drawing.Point(0, 0); + this.yMinKCt.Margin = new System.Windows.Forms.Padding(2); + this.yMinKCt.Minimum = new decimal(new int[] { + 100, + 0, + 0, + -2147483648}); + this.yMinKCt.Name = "yMinKCt"; + this.yMinKCt.Size = new System.Drawing.Size(118, 20); + this.yMinKCt.TabIndex = 8; + this.yMinKCt.ValueChanged += new System.EventHandler(this.yMinKCt_ValueChanged); + // + // splitContainer24 + // + this.splitContainer24.Dock = System.Windows.Forms.DockStyle.Fill; + this.splitContainer24.Location = new System.Drawing.Point(2, 15); + this.splitContainer24.Name = "splitContainer24"; + // + // splitContainer24.Panel1 + // + this.splitContainer24.Panel1.Controls.Add(this.splitContainer25); + // + // splitContainer24.Panel2 + // + this.splitContainer24.Panel2.Controls.Add(this.splitContainer26); + this.splitContainer24.Size = new System.Drawing.Size(419, 87); + this.splitContainer24.SplitterDistance = 136; + this.splitContainer24.TabIndex = 2; + // + // splitContainer25 + // + this.splitContainer25.Location = new System.Drawing.Point(0, 0); + this.splitContainer25.Name = "splitContainer25"; + this.splitContainer25.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer25.Panel1 + // + this.splitContainer25.Panel1.Controls.Add(this.label4); + // + // splitContainer25.Panel2 + // + this.splitContainer25.Panel2.Controls.Add(this.label3); + this.splitContainer25.Size = new System.Drawing.Size(116, 86); + this.splitContainer25.SplitterDistance = 25; + this.splitContainer25.TabIndex = 0; + // + // splitContainer26 + // + this.splitContainer26.Location = new System.Drawing.Point(0, 0); + this.splitContainer26.Name = "splitContainer26"; + this.splitContainer26.Orientation = System.Windows.Forms.Orientation.Horizontal; + // + // splitContainer26.Panel1 + // + this.splitContainer26.Panel1.Controls.Add(this.IRatMinAcceptable); + // + // splitContainer26.Panel2 + // + this.splitContainer26.Panel2.Controls.Add(this.IRatMaxAcceptable); + this.splitContainer26.Size = new System.Drawing.Size(234, 86); + this.splitContainer26.SplitterDistance = 26; + this.splitContainer26.TabIndex = 0; // // NeuCodePairs // @@ -531,27 +1005,115 @@ private void InitializeComponent() ((System.ComponentModel.ISupportInitialize)(this.splitContainer3)).EndInit(); this.splitContainer3.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.ct_LysineCount)).EndInit(); + this.splitContainer5.Panel1.ResumeLayout(false); + this.splitContainer5.Panel1.PerformLayout(); + this.splitContainer5.Panel2.ResumeLayout(false); + this.splitContainer5.Panel2.PerformLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer5)).EndInit(); + this.splitContainer5.ResumeLayout(false); this.kCtAcceptRange.ResumeLayout(false); - this.kCtAcceptRange.PerformLayout(); - ((System.ComponentModel.ISupportInitialize)(this.KMaxAcceptable)).EndInit(); + this.splitContainer21.Panel1.ResumeLayout(false); + this.splitContainer21.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer21)).EndInit(); + this.splitContainer21.ResumeLayout(false); + this.splitContainer22.Panel1.ResumeLayout(false); + this.splitContainer22.Panel1.PerformLayout(); + this.splitContainer22.Panel2.ResumeLayout(false); + this.splitContainer22.Panel2.PerformLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer22)).EndInit(); + this.splitContainer22.ResumeLayout(false); + this.splitContainer23.Panel1.ResumeLayout(false); + this.splitContainer23.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer23)).EndInit(); + this.splitContainer23.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.KMinAcceptable)).EndInit(); - ((System.ComponentModel.ISupportInitialize)(this.yMaxKCt)).EndInit(); - ((System.ComponentModel.ISupportInitialize)(this.xMaxKCt)).EndInit(); - ((System.ComponentModel.ISupportInitialize)(this.yMinKCt)).EndInit(); - ((System.ComponentModel.ISupportInitialize)(this.xMinKCt)).EndInit(); + ((System.ComponentModel.ISupportInitialize)(this.KMaxAcceptable)).EndInit(); this.splitContainer4.Panel1.ResumeLayout(false); this.splitContainer4.Panel2.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.splitContainer4)).EndInit(); this.splitContainer4.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.ct_IntensityRatio)).EndInit(); + this.splitContainer9.Panel1.ResumeLayout(false); + this.splitContainer9.Panel1.PerformLayout(); + this.splitContainer9.Panel2.ResumeLayout(false); + this.splitContainer9.Panel2.PerformLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer9)).EndInit(); + this.splitContainer9.ResumeLayout(false); this.groupBox1.ResumeLayout(false); - this.groupBox1.PerformLayout(); ((System.ComponentModel.ISupportInitialize)(this.IRatMaxAcceptable)).EndInit(); ((System.ComponentModel.ISupportInitialize)(this.IRatMinAcceptable)).EndInit(); + this.groupBox3.ResumeLayout(false); + this.splitContainer10.Panel1.ResumeLayout(false); + this.splitContainer10.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer10)).EndInit(); + this.splitContainer10.ResumeLayout(false); + this.splitContainer11.Panel1.ResumeLayout(false); + this.splitContainer11.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer11)).EndInit(); + this.splitContainer11.ResumeLayout(false); + this.splitContainer17.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer17)).EndInit(); + this.splitContainer17.ResumeLayout(false); + this.splitContainer18.Panel1.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer18)).EndInit(); + this.splitContainer18.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.yMaxIRat)).EndInit(); + this.splitContainer12.Panel1.ResumeLayout(false); + this.splitContainer12.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer12)).EndInit(); + this.splitContainer12.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.xMinIRat)).EndInit(); ((System.ComponentModel.ISupportInitialize)(this.xMaxIRat)).EndInit(); + this.splitContainer19.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer19)).EndInit(); + this.splitContainer19.ResumeLayout(false); + this.splitContainer20.Panel1.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer20)).EndInit(); + this.splitContainer20.ResumeLayout(false); ((System.ComponentModel.ISupportInitialize)(this.yMinIRat)).EndInit(); - ((System.ComponentModel.ISupportInitialize)(this.xMinIRat)).EndInit(); + this.groupBox2.ResumeLayout(false); + this.splitContainer6.Panel1.ResumeLayout(false); + this.splitContainer6.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer6)).EndInit(); + this.splitContainer6.ResumeLayout(false); + this.splitContainer7.Panel1.ResumeLayout(false); + this.splitContainer7.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer7)).EndInit(); + this.splitContainer7.ResumeLayout(false); + this.splitContainer13.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer13)).EndInit(); + this.splitContainer13.ResumeLayout(false); + this.splitContainer14.Panel1.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer14)).EndInit(); + this.splitContainer14.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.yMaxKCt)).EndInit(); + this.splitContainer8.Panel1.ResumeLayout(false); + this.splitContainer8.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer8)).EndInit(); + this.splitContainer8.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.xMinKCt)).EndInit(); + ((System.ComponentModel.ISupportInitialize)(this.xMaxKCt)).EndInit(); + this.splitContainer15.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer15)).EndInit(); + this.splitContainer15.ResumeLayout(false); + this.splitContainer16.Panel1.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer16)).EndInit(); + this.splitContainer16.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.yMinKCt)).EndInit(); + this.splitContainer24.Panel1.ResumeLayout(false); + this.splitContainer24.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer24)).EndInit(); + this.splitContainer24.ResumeLayout(false); + this.splitContainer25.Panel1.ResumeLayout(false); + this.splitContainer25.Panel1.PerformLayout(); + this.splitContainer25.Panel2.ResumeLayout(false); + this.splitContainer25.Panel2.PerformLayout(); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer25)).EndInit(); + this.splitContainer25.ResumeLayout(false); + this.splitContainer26.Panel1.ResumeLayout(false); + this.splitContainer26.Panel2.ResumeLayout(false); + ((System.ComponentModel.ISupportInitialize)(this.splitContainer26)).EndInit(); + this.splitContainer26.ResumeLayout(false); this.ResumeLayout(false); } @@ -563,25 +1125,49 @@ private void InitializeComponent() private System.Windows.Forms.SplitContainer splitContainer2; private System.Windows.Forms.SplitContainer splitContainer3; public System.Windows.Forms.DataVisualization.Charting.Chart ct_LysineCount; - private System.Windows.Forms.SplitContainer splitContainer4; - public System.Windows.Forms.DataVisualization.Charting.Chart ct_IntensityRatio; - private System.Windows.Forms.NumericUpDown xMaxKCt; - private System.Windows.Forms.NumericUpDown xMinKCt; - private System.Windows.Forms.NumericUpDown yMinKCt; - private System.Windows.Forms.NumericUpDown yMaxKCt; - private System.Windows.Forms.NumericUpDown yMaxIRat; - private System.Windows.Forms.NumericUpDown xMaxIRat; - private System.Windows.Forms.NumericUpDown yMinIRat; - private System.Windows.Forms.NumericUpDown xMinIRat; + private System.Windows.Forms.SplitContainer splitContainer5; private System.Windows.Forms.GroupBox kCtAcceptRange; - private System.Windows.Forms.NumericUpDown KMaxAcceptable; + private System.Windows.Forms.SplitContainer splitContainer21; + private System.Windows.Forms.SplitContainer splitContainer22; + private System.Windows.Forms.Label label1; private System.Windows.Forms.Label label2; + private System.Windows.Forms.SplitContainer splitContainer23; private System.Windows.Forms.NumericUpDown KMinAcceptable; - private System.Windows.Forms.Label label1; + private System.Windows.Forms.NumericUpDown KMaxAcceptable; + private System.Windows.Forms.SplitContainer splitContainer4; + public System.Windows.Forms.DataVisualization.Charting.Chart ct_IntensityRatio; + private System.Windows.Forms.SplitContainer splitContainer9; private System.Windows.Forms.GroupBox groupBox1; private System.Windows.Forms.NumericUpDown IRatMaxAcceptable; private System.Windows.Forms.Label label3; private System.Windows.Forms.NumericUpDown IRatMinAcceptable; private System.Windows.Forms.Label label4; + private System.Windows.Forms.GroupBox groupBox3; + private System.Windows.Forms.SplitContainer splitContainer10; + private System.Windows.Forms.SplitContainer splitContainer11; + private System.Windows.Forms.SplitContainer splitContainer17; + private System.Windows.Forms.SplitContainer splitContainer18; + private System.Windows.Forms.NumericUpDown yMaxIRat; + private System.Windows.Forms.SplitContainer splitContainer12; + private System.Windows.Forms.NumericUpDown xMinIRat; + private System.Windows.Forms.NumericUpDown xMaxIRat; + private System.Windows.Forms.SplitContainer splitContainer19; + private System.Windows.Forms.SplitContainer splitContainer20; + private System.Windows.Forms.NumericUpDown yMinIRat; + private System.Windows.Forms.GroupBox groupBox2; + private System.Windows.Forms.SplitContainer splitContainer6; + private System.Windows.Forms.SplitContainer splitContainer7; + private System.Windows.Forms.SplitContainer splitContainer13; + private System.Windows.Forms.SplitContainer splitContainer14; + private System.Windows.Forms.NumericUpDown yMaxKCt; + private System.Windows.Forms.SplitContainer splitContainer8; + private System.Windows.Forms.NumericUpDown xMinKCt; + private System.Windows.Forms.NumericUpDown xMaxKCt; + private System.Windows.Forms.SplitContainer splitContainer15; + private System.Windows.Forms.SplitContainer splitContainer16; + private System.Windows.Forms.NumericUpDown yMinKCt; + private System.Windows.Forms.SplitContainer splitContainer24; + private System.Windows.Forms.SplitContainer splitContainer25; + private System.Windows.Forms.SplitContainer splitContainer26; } } \ No newline at end of file diff --git a/ProteoformSuiteInternal/ResultsSummaryGenerator.cs b/ProteoformSuiteInternal/ResultsSummaryGenerator.cs index 247d6fdd..b53de85d 100644 --- a/ProteoformSuiteInternal/ResultsSummaryGenerator.cs +++ b/ProteoformSuiteInternal/ResultsSummaryGenerator.cs @@ -192,6 +192,8 @@ public static string quant_report() report += SaveState.lollipop.satisfactoryProteoforms.Count.ToString() + "\tQuantified Experimental Proteoforms (Threshold for Quantification: " + SaveState.lollipop.minBiorepsWithObservations.ToString() + " = " + SaveState.lollipop.observation_requirement + ")" + Environment.NewLine; report += SaveState.lollipop.satisfactoryProteoforms.Count(p => p.quant.significant).ToString() + "\tExperimental Proteoforms with Significant Change (Threshold for Significance: Log2FoldChange > " + SaveState.lollipop.minProteoformFoldChange.ToString() + ", & Total Intensity from Quantification > " + SaveState.lollipop.minProteoformIntensity.ToString() + ", & Q-Value < " + SaveState.lollipop.minProteoformFDR.ToString() + ")" + Environment.NewLine; + report += SaveState.lollipop.selectAverageIntensity.ToString() + "\tAverage Intensity Quantified Experimental Proteoform Observations" + Environment.NewLine; + report += SaveState.lollipop.selectStDev.ToString() + "\tIntensity Standard Deviation for Quantified Experimental Proteoform" + Environment.NewLine; report += SaveState.lollipop.getInterestingFamilies(SaveState.lollipop.satisfactoryProteoforms, SaveState.lollipop.minProteoformFoldChange, SaveState.lollipop.minProteoformFDR, SaveState.lollipop.minProteoformIntensity).Count.ToString() + "\tProteoform Families with Significant Change" + Environment.NewLine; report += SaveState.lollipop.inducedOrRepressedProteins.Count.ToString() + "\tIdentified Proteins with Significant Change" + Environment.NewLine; report += SaveState.lollipop.goTermNumbers.Count(g => g.by < (double)SaveState.lollipop.minProteoformFDR).ToString() + "\tGO Terms of Significance (Benjimini-Yekeulti p-value < " + SaveState.lollipop.minProteoformFDR.ToString() + "): " + Environment.NewLine; diff --git a/ProteoformSuiteManual/docs/project_overview.tex b/ProteoformSuiteManual/docs/project_overview.tex index 8db8c0ca..9eb5f130 100644 --- a/ProteoformSuiteManual/docs/project_overview.tex +++ b/ProteoformSuiteManual/docs/project_overview.tex @@ -9,10 +9,13 @@ %[state motivation] %[state problem definition] +\begin{figure}[ht] +\includegraphics[page=1,scale=0.4,angle=270]{figures/AllFamilies.pdf} +\end{figure} + \addcontentsline{toc}{section}{Overview} \section*{Project Overview} Proteoform Suite is a user interface for the analysis of intact proteoform MS data. The source-code is openly available at \url{https://github.com/smith-chem-wisc/proteoform-suite}. This software identifies and quantifies proteoforms by comparing intact mass and lysine count for each observed proteoform to all theoretical proteoforms generated from known protein sequences and annotated PTMs. These comparisons reveal both exact-mass matches and mass differences characteristic of known PTMs. The program also quantifies relative proteoform abundances between two conditions by calculating intensity ratios for each identified proteoform. Finally, it streamlines the visualization of proteoform abundance changes and PTM relationships in the program Cytoscape. The display of constellations of proteoforms can be examined to better understand the biological changes measured in the MS experiment. \\ -Could include a proteoform family figure to make it enticing \ No newline at end of file diff --git a/ProteoformSuiteManual/proteoform_suite_manual.tex b/ProteoformSuiteManual/proteoform_suite_manual.tex index 1b1065ea..459e7ddc 100644 --- a/ProteoformSuiteManual/proteoform_suite_manual.tex +++ b/ProteoformSuiteManual/proteoform_suite_manual.tex @@ -17,6 +17,7 @@ % Project overview ----------------------------------- \maketitle \input{docs/project_overview} +\pagebreak % Table of contents ------------------------------------------------ % \maketitle