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Glyco Results.txt does not have a summary at the top :( #2368

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nbollis opened this issue May 29, 2024 · 0 comments
Open

Glyco Results.txt does not have a summary at the top :( #2368

nbollis opened this issue May 29, 2024 · 0 comments

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@nbollis
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nbollis commented May 29, 2024

Describing the issue
Here is an example from a classic search task. The All target XXX is what Jenkins looks for

All target PSMs with q-value = 0.01: 7784
All target proteoforms with q-value = 0.01 : 1865
All target protein groups with q-value = 0.01 (1% FDR): 148

MS2 spectra in 02-17-20_jurkat_td_rep2_fract4-calib: 2923
Precursors fragmented in 02-17-20_jurkat_td_rep2_fract4-calib: 68167
02-17-20_jurkat_td_rep2_fract4-calib target PSMs with q-value = 0.01: 4228

MS2 spectra in 02-18-20_jurkat_td_rep2_fract5-calib: 2455
Precursors fragmented in 02-18-20_jurkat_td_rep2_fract5-calib: 60533
02-18-20_jurkat_td_rep2_fract5-calib target PSMs with q-value = 0.01: 3556

Target protein groups within 1 % FDR in 02-17-20_jurkat_td_rep2_fract4-calib: 108
Target protein groups within 1 % FDR in 02-18-20_jurkat_td_rep2_fract5-calib: 130
02-17-20_jurkat_td_rep2_fract4-calib Target proteoforms with q-value = 0.01 : 1266

02-18-20_jurkat_td_rep2_fract5-calib Target proteoforms with q-value = 0.01 : 1150

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