CI-mac-x86_64.yml

name: CI macOS 11 x86_64

on:
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]
  release:
    types: [ published ]
  workflow_dispatch:

env:
  BUILD_TYPE: Release
  MACOSX_DEPLOYMENT_TARGET: 10.13

jobs:
  build:
    runs-on: macos-11
    steps:
    - uses: actions/checkout@v2   
    
    - name: Install dependencies
      run: |
        brew reinstall zlib
        brew install openslide pcre libomp
        # Install a specific version of libomp (14.0.6) since newer versions fail with cmake
        #curl https://raw.githubusercontent.com/Homebrew/homebrew-core/c87d6a0c8360c4684e3375ce6c4576214acdd71b/Formula/libomp.rb > $(find $(brew --repository) -name libomp.rb) && brew reinstall libomp
    
    - name: Setup pyenv
      env:
        ACTIONS_ALLOW_UNSECURE_COMMANDS: true
        MACOSX_DEPLOYMENT_TARGET: 10.13
        PYTHON_CONFIGURE_OPTS: "--enable-framework"
        CFLAGS: "-Wno-implicit-function-declaration"
        LDFLAGS: "-L/usr/local/opt/zlib/lib"
        CPPFLAGS: "-I/usr/local/opt/zlib/include"
        PKG_CONFIG_PATH: "/usr/local/opt/zlib/lib/pkgconfig"
      uses: "gabrielfalcao/pyenv-action@v5"
      with:
          default: 3.6.9
        
    - name: Install pip dependencies
      run: |
        pip3 install --upgrade pip
        pip3 install numpy==1.19.5 twine wheel==0.37.1

    - name: Configure CMake
      run: |
        cmake -B ${{github.workspace}}/build \
            -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}}\
            -DCMAKE_OSX_ARCHITECTURES:STRING="x86_64" \
            -DFAST_MODULE_OpenVINO=ON \
            -DFAST_MODULE_Dicom=ON \
            -DFAST_MODULE_WholeSlideImaging=ON \
            -DFAST_MODULE_OpenIGTLink=ON \
            -DFAST_MODULE_Clarius=ON \
            -DFAST_MODULE_TensorFlow=ON \
            -DFAST_MODULE_HDF5=ON \
            -DFAST_MODULE_Plotting=ON \
            -DFAST_MODULE_Python=ON \
            -DFAST_Python_Version="3.6" \
            -DFAST_Python_Include="$(dirname $(pyenv which python))/../include/python3.6m/" \
            -DFAST_Python_Library="$(dirname $(pyenv which python))/../lib/libpython3.6.dylib" \
            -DFAST_MODULE_RealSense=OFF \
            -DFAST_BUILD_EXAMPLES=ON

    - name: Build
      run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -j 4

    - name: Build Python wheel
      env:
        MACOSX_DEPLOYMENT_TARGET: 10.13
      run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} --target python-wheel -j 4

    - name: Package
      run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} --target package -j 4

    - name: Upload archive package
      uses: actions/upload-artifact@v2
      with:
        name: Archive package (tar.xz)
        path: ${{github.workspace}}/build/fast_*.tar.xz
        if-no-files-found: error

    - name: Upload Python wheel
      uses: actions/upload-artifact@v2
      with:
        name: Python wheel
        path: ${{github.workspace}}/build/python/dist/pyFAST-*.whl
        if-no-files-found: error

    - name: Upload archive package to release
      if: ${{ github.event_name == 'release' }}
      uses: svenstaro/upload-release-action@v2
      with:
        repo_token: ${{ secrets.GITHUB_TOKEN }}
        file: ${{github.workspace}}/build/fast_*.tar.xz
        file_glob: true
        tag: ${{ github.ref }}
        overwrite: true

    - name: Upload Python wheel to release
      if: ${{ github.event_name == 'release' }}
      uses: svenstaro/upload-release-action@v2
      with:
        repo_token: ${{ secrets.GITHUB_TOKEN }}
        file: ${{github.workspace}}/build/python/dist/pyFAST-*.whl
        file_glob: true
        tag: ${{ github.ref }}
        overwrite: true

    - name: Upload Python wheel to PyPi
      if: ${{ github.event_name == 'release' && !contains(github.ref, 'rc') }}
      run: |
        twine upload --username __token__ --password ${{ secrets.PYPI_API_TOKEN }} ${{github.workspace}}/build/python/dist/pyFAST-*.whl

    - name: Test PyPi upload
      if: ${{ github.event_name == 'release' && !contains(github.ref, 'rc') }}
      run: |
        sleep 30
        pip3 install pyfast==${GITHUB_REF#refs/tags/v}
      shell: bash

#  test-cpp:
#    name: Run C++ Tests
#    needs: [build]
#    runs-on: [self-hosted, macos]
#    steps:
#      - name: Download artifacts
#        uses: actions/download-artifact@v3
#        with:
#          name: 'Archive package (tar.xz)'
#          path: ${{github.workspace}}/download/
#      - name: Extract artifact
#        run: |
#          mkdir -p ${{github.workspace}}/download/
#          cd ${{github.workspace}}/download/
#          tar -xf fast_*.tar.xz -C ${{github.workspace}}
#      - name: Download test data
#        run: |
#          cd ${{github.workspace}}
#          cd fast*
#          cd fast/bin/
#          ./downloadTestData
#      - name: Run tests
#        run: |
#          cd ${{github.workspace}}
#          cd fast_*
#          cd fast/bin/
#          ./testFAST ~[visual]~[unstablemac]
#      - name: Cleanup
#        if: always()
#        run: |
#          rm -Rf ${{github.workspace}}
#          rm -Rf $HOME/FAST/kernel_binaries/*
#
#  test-python:
#    name: Run Python Tests
#    needs: [build]
#    runs-on: [self-hosted, macos]
#    steps:
#      - uses: actions/checkout@v2
#      - name: Download artifacts
#        uses: actions/download-artifact@v3
#        with:
#          name: 'Python wheel'
#          path: ${{github.workspace}}/download/
#      - name: Create environment and install python packages
#        run: |
#          cd ${{github.workspace}}
#          mkdir tmp
#          cd tmp
#          virtualenv -p python3 venv
#          source venv/bin/activate
#          pip3 install pytest
#          pip3 install ${{github.workspace}}/download/pyFAST-*.whl
#      - name: Run tests
#        run: |
#          cd ${{github.workspace}}/tmp/
#          source venv/bin/activate
#          pytest ../source/FAST/
#      - name: Cleanup
#        if: always()
#        run: |
#          rm -Rf ${{github.workspace}}/download/
#          rm -Rf ${{github.workspace}}/tmp/
#          rm -Rf $HOME/FAST/kernel_binaries/*