From 34e82be1b00a8191e49625628647a21b627b4ba2 Mon Sep 17 00:00:00 2001 From: Casey Icenhour Date: Sun, 11 Feb 2024 11:41:12 -0700 Subject: [PATCH 1/4] Update some website content - Remove dead Graves Lab link on homepage - Replace INL HPC acknowledgement with updated one - Replace Zapdos citation bibtex in 'Citing' with better one from the zapdos_journal_articles.bib file. --- doc/content/citing.md | 11 ++++++----- doc/content/index.md | 10 +++++----- 2 files changed, 11 insertions(+), 10 deletions(-) diff --git a/doc/content/citing.md b/doc/content/citing.md index e2a7b5da560..6f5fb1f9832 100644 --- a/doc/content/citing.md +++ b/doc/content/citing.md @@ -6,15 +6,16 @@ If you use Zapdos for your publication, please cite the following: ``` -@Article{zapdos-paper, - author = {Alexander D Lindsay and David B Graves and Steven C Shannon}, - title = {Fully coupled simulation of the plasma liquid interface and interfacial coefficient effects}, - journal = {J. Phys. D: Appl Phys.}, +@article{zapdos-paper, + doi = {10.1088/0022-3727/49/23/235204}, year = {2016}, + publisher = {IOP Publishing}, volume = {49}, number = {23}, pages = {235204}, - note = {\url{http://dx.doi.org/10.1088/0022-3727/49/23/235204}} + author = {Alexander D. Lindsay and David B. Graves and Steven C. Shannon}, + title = {Fully coupled simulation of the plasma liquid interface and interfacial coefficient effects}, + journal = {Journal of Physics D: Applied Physics} } ``` diff --git a/doc/content/index.md b/doc/content/index.md index c0a41c2034a..676a2cbd10c 100644 --- a/doc/content/index.md +++ b/doc/content/index.md @@ -44,9 +44,9 @@ Begin by exploring [our installation page](getting_started/installation.md). # Collaborators (current and former) class=center style=font-weight:200;font-size:200% - [Laboratory of Computational Plasma Physics (University of Illinois Urbana-Champaign)](https://curreli.npre.illinois.edu/) -- [Go Research Group (University of Notre Dame)](https://gogroup.nd.edu/) -- [Graves Lab (University of California, Berkeley)](http://www.graveslab.org/) - [Oak Ridge National Laboratory, Fusion Energy Division](https://www.ornl.gov/division/fed) +- [Go Research Group (University of Notre Dame)](https://gogroup.nd.edu/) +- Graves Lab (University of California, Berkeley) # Funding Acknowledgements class=center style=font-weight:200;font-size:200% @@ -63,9 +63,9 @@ Begin by exploring [our installation page](getting_started/installation.md). - This research is being performed using funding received from the DOE Office of Nuclear Energy's [Nuclear Energy University Programs](https://neup.inl.gov/SitePages/Home.aspx). -- This research made use of [Idaho National Laboratory computing resources](https://hpc.inl.gov/) - which are supported by the Office of Nuclear Energy of the U.S. Department of - Energy and the Nuclear Science User Facilities under Contract No. DE-AC07-05ID14517. +- This research made use of [Idaho National Laboratory's High Performance Computing systems](https://hpc.inl.gov/) + located at the Collaborative Computing Center and supported by the Office of Nuclear Energy of + the U.S. Department of Energy and the Nuclear Science User Facilities under Contract No. DE-AC07-05ID14517. - This research was supported by the [Idaho National Laboratory Graduate Fellowship Program](https://inl.gov/inl-initiatives/education/graduate-fellowship-program/) which is supported by the U.S. Department of Energy under Contract No. From 1b8143dfbd478a96455e8c917d8767e3f80857b9 Mon Sep 17 00:00:00 2001 From: "Icenhour, Casey Tyler" Date: Wed, 14 Feb 2024 16:05:36 -0700 Subject: [PATCH 2/4] Add a mailmap file --- .mailmap | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) create mode 100644 .mailmap diff --git a/.mailmap b/.mailmap new file mode 100644 index 00000000000..470a28dc16f --- /dev/null +++ b/.mailmap @@ -0,0 +1,23 @@ +Alex Lindsay +Alex Lindsay +Alex Lindsay +Casey Icenhour +Casey Icenhour +Casey Icenhour +Shane Keniley +Corey DeChant +Corey DeChant <37221357+csdechant@users.noreply.github.com> +Corey DeChant +John Ryan Haase +John Ryan Haase +Cody Permann +Cody Permann +Cody Permann +Derek Gaston +Derek Gaston +Grayson Gall +Grayson Gall <66559200+gsgall@users.noreply.github.com> +Daniel Schwen +Daniel Schwen +MOOSE maintenance +Mengnan Li <118846840+MengnanLi91@users.noreply.github.com> From 4f6c63f3458c3da58c4f621e23a4884ae10d60e7 Mon Sep 17 00:00:00 2001 From: "Icenhour, Casey Tyler" Date: Tue, 5 Mar 2024 15:03:12 -0700 Subject: [PATCH 3/4] Add documentation bibtex file and replace two citation instances with bibtex extension calls --- doc/content/bib/documentation.bib | 24 ++++++++++++++++++++ doc/content/source/kernels/ShootMethodLog.md | 2 +- 2 files changed, 25 insertions(+), 1 deletion(-) create mode 100644 doc/content/bib/documentation.bib diff --git a/doc/content/bib/documentation.bib b/doc/content/bib/documentation.bib new file mode 100644 index 00000000000..ed3008408d3 --- /dev/null +++ b/doc/content/bib/documentation.bib @@ -0,0 +1,24 @@ +@article{Lymberopoulos1993, + author = {Lymberopoulos, Dimitris P. and Economou, Demetre J.}, + title = {Fluid simulations of glow discharges: Effect of metastable atoms in argon}, + journal = {Journal of Applied Physics}, + volume = {73}, + number = {8}, + pages = {3668-3679}, + year = {1993}, + month = {04}, + issn = {0021-8979}, + doi = {10.1063/1.352926} +} + +@article{Gogolides1992, + author = {E. Gogolides and H.H. Sawin and R.A. Brown}, + title = {Direct calculation of time-periodic states of continuum models of radio-frequency plasmas}, + journal = {Chemical Engineering Science}, + volume = {47}, + number = {15}, + pages = {3839-3855}, + year = {1992}, + issn = {0009-2509}, + doi = {10.1016/0009-2509(92)85133-V} +} diff --git a/doc/content/source/kernels/ShootMethodLog.md b/doc/content/source/kernels/ShootMethodLog.md index 1c6af963a49..528afc92628 100644 --- a/doc/content/source/kernels/ShootMethodLog.md +++ b/doc/content/source/kernels/ShootMethodLog.md @@ -4,7 +4,7 @@ ## Overview -To reduce the run time of simulations of radio frequency discharges involving neutral particles (such as metastable species), acceleration by shooting method can be implemented. Zapdos' version of the shooting method scheme is based on work presented by [Lymberopoulos and Economou](https://doi.org/10.1063/1.352926), but a more general description of the method can be found by [Gogolides, Sawin and Brown](https://www.sciencedirect.com/science/article/abs/pii/000925099285133V?via%3Dihub). This scheme takes advantage of the fact that a RF discharge will eventually have a periodic steady-state, in the form of: +To reduce the run time of simulations of radio frequency discharges involving neutral particles (such as metastable species), acceleration by shooting method can be implemented. Zapdos' version of the shooting method scheme is based on work presented by [!cite](Lymberopoulos1993), but a more general description of the method can be found by [!cite](Gogolides1992). This scheme takes advantage of the fact that a RF discharge will eventually have a periodic steady-state, in the form of: \begin{equation} N_{j}(0)-N_{j}(T)=0 From 155fef2f5cbd13440e449d40a50d9ba6fb7ca964 Mon Sep 17 00:00:00 2001 From: Casey Icenhour Date: Tue, 5 Mar 2024 15:32:09 -0700 Subject: [PATCH 4/4] Fixup duplicate in mailmap --- .mailmap | 1 - 1 file changed, 1 deletion(-) diff --git a/.mailmap b/.mailmap index 470a28dc16f..7ff9b0dcc7e 100644 --- a/.mailmap +++ b/.mailmap @@ -7,7 +7,6 @@ Casey Icenhour Shane Keniley Corey DeChant Corey DeChant <37221357+csdechant@users.noreply.github.com> -Corey DeChant John Ryan Haase John Ryan Haase Cody Permann