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buildspec_master.yml
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buildspec_master.yml
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version: 0.2
phases:
pre_build:
commands:
- bash docker/preflight.sh
- cd docker/alignment/ && bash build.sh quay.io wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../
- cd docker/copynumber/ && bash build.sh quay.io wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../
- cd docker/breakpoint/ && bash build.sh quay.io wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../
- cd docker/germline/ && bash build.sh quay.io wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../
- cd docker/somatic/ && bash build.sh quay.io wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../
- cd docker/qc/ && bash build.sh quay.io wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../
- cd docker/remixt_hg38/ && bash build.sh quay.io wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../
post_build:
commands:
- if [ $CODEBUILD_BUILD_SUCCEEDING = 1 ]; then cd docker/alignment/ && bash deploy.sh quay.io wgspipeline wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../; fi
- if [ $CODEBUILD_BUILD_SUCCEEDING = 1 ]; then cd docker/copynumber/ && bash deploy.sh quay.io wgspipeline wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../; fi
- if [ $CODEBUILD_BUILD_SUCCEEDING = 1 ]; then cd docker/breakpoint/ && bash deploy.sh quay.io wgspipeline wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../; fi
- if [ $CODEBUILD_BUILD_SUCCEEDING = 1 ]; then cd docker/germline/ && bash deploy.sh quay.io wgspipeline wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../; fi
- if [ $CODEBUILD_BUILD_SUCCEEDING = 1 ]; then cd docker/somatic/ && bash deploy.sh quay.io wgspipeline wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../; fi
- if [ $CODEBUILD_BUILD_SUCCEEDING = 1 ]; then cd docker/qc/ && bash deploy.sh quay.io wgspipeline wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../; fi
- if [ $CODEBUILD_BUILD_SUCCEEDING = 1 ]; then cd docker/remixt_hg38/ && bash deploy.sh quay.io wgspipeline wgspipelinetest $QUAY_USR $QUAY_PSW && cd ../../; fi