From 85ac35723aa741729c627119a474834b8e551d01 Mon Sep 17 00:00:00 2001 From: Lior Shachaf Date: Mon, 4 Nov 2024 21:22:19 -0500 Subject: [PATCH] Add test for mi2_matrix_build function --- tests/InSilicoSize50-Ecoli1_SS_all.tsv | 170 ++++++++++++++++++ ...licoSize50-Ecoli1_SS_all_MI2_FB13_Shan.mat | Bin 0 -> 20200 bytes tests/test_building_mi_matrices.py | 36 ++++ 3 files changed, 206 insertions(+) create mode 100644 tests/InSilicoSize50-Ecoli1_SS_all.tsv create mode 100644 tests/test_InSilicoSize50-Ecoli1_SS_all_MI2_FB13_Shan.mat create mode 100644 tests/test_building_mi_matrices.py diff --git a/tests/InSilicoSize50-Ecoli1_SS_all.tsv b/tests/InSilicoSize50-Ecoli1_SS_all.tsv new file mode 100644 index 0000000..030982e --- /dev/null +++ b/tests/InSilicoSize50-Ecoli1_SS_all.tsv @@ -0,0 +1,170 @@ +0.6019951 0.6373792 0.7384316 0.7382356 0.6900599 0.6269091 0.6318888 0.7217762 0.7394258 0.5166423 0.6850817 0.0750921 0.1272723 0.7280017 0.6479695 0.0018087 0.7090541 0.6672469 0.8378208 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scipy.io + +# Ensure the root directory is in the PYTHONPATH +sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '../CODE'))) +from Building_MI_matrices import import_and_clean_input_file, get_dict_name, mi2_matrix_build # noqa: E402 + + +def test_mi2_matrix_build(): + # Define the input parameters + input_file_name = 'tests/InSilicoSize50-Ecoli1_SS_all.tsv' + bins_or_neighbors = 13 + mi_est = 'Shannon' + + # Load the data + in1_data_array = import_and_clean_input_file(input_file_name) + + # Load the expected result + dict_name = get_dict_name("MI2", bins_or_neighbors, mi_est) + expected_result = scipy.io.loadmat('tests/test_InSilicoSize50-Ecoli1_SS_all_MI2_FB13_Shan.mat') + expected_result = expected_result[dict_name] + + # Compute the result + mi2_matrix_build(input_file_name, in1_data_array, bins_or_neighbors, mi_est, self_info=False) + result = scipy.io.loadmat('tests/InSilicoSize50-Ecoli1_SS_all_MI2_FB13_Shan.mat') + result = result[dict_name] + + # Check the result + assert np.allclose(result, expected_result, atol=1e-10) + + +if __name__ == "__main__": + pytest.main()