diff --git a/CHANGELOG.md b/CHANGELOG.md index a7df805a6..0d3043885 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,12 +8,12 @@ and this project adheres to [Semantic Versioning][]. [keep a changelog]: https://keepachangelog.com/en/1.0.0/ [semantic versioning]: https://semver.org/spec/v2.0.0.html -## Unreleased +## v0.16.0 ### Backwards-incompatible changes - Use the `umi_count` field instead of `duplicate_count` to store UMI counts. The field `umi_count` has been added to - the AIRR Rearrangement standard in [version 1.4](https://docs.airr-community.org/en/latest/news.html#version-1-4-1-august-27-2022). + the AIRR Rearrangement standard in [version 1.4](https://docs.airr-community.org/en/latest/news.html#version-1-4-1-august-27-2022) ([#487](https://github.com/scverse/scirpy/pull/487)). Use of `duplicate_count` for UMI counts is now discouraged. Scirpy will use `umi_count` in all `scirpy.io` functions. It will _not_ change AIRR data that is read through `scirpy.io.read_airr` that still uses the `duplicate_count` column. Scirpy remains compatible with datasets that still use `duplicate_count`. You can update your dataset using @@ -22,6 +22,10 @@ and this project adheres to [Semantic Versioning][]. adata.obsm["airr"]["umi_count"] = adata.obsm["airr"]["duplicate_count"] ``` +### Other + +- the `io.to_dandelion` and `io.from_dandelion` interoperability functions now rely on the implementation provided by Dandelion itself ([#483](https://github.com/scverse/scirpy/pull/483)). + ## v0.15.0 ### Fixes