.jconfig

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%% FILE: .jconfig
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%% DESCRIPTION: Sample configuration file to be distributed with jtag
%%              application.
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%% CVS: $Id: .jconfig,v 1.13 2005-12-22 15:49:58 scottl Exp $
%%
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% H E A D E R  I N F O %
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% B O D Y  I N F O %
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% config_style
% 'global' means these settings will be used for all files opened.
% 'per_file' means each jtag file's config settings will be loaded.
config_style = global

% mode:
% Set the default selection mode.  Valid choices are 'crop' or
% 'simple'.  Crop allows the user to create a bounding box with the mouse,
% whereas simple only allows the user to select vertical boundaries by
% clicking with the mouse (horizontal boundaries are the image width
% boundaries)
%mode = simple
mode = crop

% window_size:
% Set the default size of the window containing the application.  Must be a
% value of the form <width> <height> where each <width> and <height> are
% replaced with positive numerical values specifying the number of pixels for
% the width and height respectively.
window_size = 900 900

% window_pos:
% Set the default initial position (top left corner) of the window containing
% the application.  Must be a value of the form <left> <top> where
% each of the two arguments are numerical integers specifying the number of
% pixels to move in from the left, top respectively edges before placing the
% window on the screen
window_pos = 0 0

% canvas_size:
% Set the default size of the canvas upon which the image will be displayed.
% Must be a value of the form <width> <height> where each <width> and <height>
% are replaced with positive numerical values specifying the number of pixels
% for the width and height respectively.  These values should be smaller than
% those specified in the window_size
canvas_size = 620 825

% bucket_size:
% Set the default size of each classification bucket displayed around the
% canvas.  These are initial guidelines only, and the application will
% automatically expand them to fit in the available space (if there is room
% for them).
bucket_size = 50 50

% snap_threshold:
% Sets the required percentage of non-background pixels that must be found
% when scanning a single line of a selection rectangle to prohibit it from
% being passed over when snapping it to text.  This value must lie in the
% range [0...100] and can take on fractions if neccessary
snap_threshold = 0.001

% learner:
% The name of the learning algorithm to be used during automatic "prediction"
% by the application.  See the matlab/README file for more information on
% available learners.
% learner = knn_fn
learner = lr_fn
% learner = memm_fn

% learner_args:
% Any additional arguments that the learning algorithm expects to be passed to
% perform classification.  Note that the learner will require a list of class
% names as its second argument.  This is generated automatically by the JTAG
% application from the list of classes below, so it should *not* be specified
% as an argument.  Each argument you do specify should be separated by
% whitespace.  For more information see the matlab file associated with the
% learner specified above and the matlab/README file.
%learner_args = './matlab/results/withmarks/marks-jmlr-train.lr.mat'
learner_args = './matlab/results/withmarks/marks-nips-train.lr.mat'

% classes:
% List of possible classification types based on the component of the journal
% that they represent.  Each item will contain a string specifying its name
% and a string giving its colour (symbolic equivalent of the 8-bit RGB
% values).  Each classifier will be separted by whitespace/newlines, and the
% component name and colour can not contain any spaces.
classes = (
               abstract             #FF0000
               authour_list         #FFE600
               bullet_item          #33FF00
               code_block           #00FFB3
               decoration           #0066FF
               editor_list          #8000FF
               equation             #DC0000
               eq_number            #A37C90
               figure               #1983F2
               figure_caption       #2CDC00
               figure_label         #00DC9A
               footer               #0058DC
               footnote             #6E00DC
               graph                #DC0084
               header               #B80000
               image                #B8A500
               main_title           #00B881
               pg_number            #0049B8
               references           #5C00B8
               section_heading      #B8006E
               subsection_heading   #940000
               table                #948500
               table_label          #1D9400
               table_caption        #009467
               text                 #003B94
               % the following 2 classes will not actually appear as buckets
               start_of_page        #00FF00
               end_of_page          #0000FF 
          )