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Change erosion to a 2D slicewise #1

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jcohenadad opened this issue Feb 28, 2020 · 0 comments · May be fixed by #3
Open

Change erosion to a 2D slicewise #1

jcohenadad opened this issue Feb 28, 2020 · 0 comments · May be fixed by #3

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@jcohenadad
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The current script: Outside.in_Erosion.Script.sh is performing a 3D kernel operation, which produces partial volume.

To fix that: we need to switch the operation to a 2D erosion.

Things to check/fix:

  • redefinition of selem variable in erosion/dilation kernel.
  • use the iteration feature from scikit-image to get multi-step erosion
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Refactoring to get the erosion script working sct-pipeline/cord-erosion
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@jcohenadad