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DESCRIPTION
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Package: chipenrich.data
Title: Companion package to chipenrich
Version: 2.25.0
Date: 2023-03-29
Authors@R: c(
person(c("Ryan P."),"Welch",role = c("aut","cph"),email = "[email protected]"),
person("Chee","Lee",role = c("aut"),email = "[email protected]"),
person("Raymond G.","Cavalcante",role = c("aut"),email = "[email protected]"),
person("Kai","Wang",role = c("cre"),email = "[email protected]"),
person(c("Laura J."),"Scott",role = c("ths"), email = "[email protected]"),
person(c("Maureen A."),"Sartor",role = c("ths"),email = "[email protected]"))
Description: Supporting data for the chipenrich package. Includes pre-defined gene sets, gene locus definitions, and mappability estimates.
biocViews: ChIPSeq, Epigenetics, FunctionalGenomics, GeneSetEnrichment, HistoneModification, Regression
Depends:
R (>= 3.4.0)
Imports:
AnnotationDbi,
BiocGenerics,
methods,
GenomicRanges,
GenomeInfoDb,
IRanges,
readr,
rtracklayer,
S4Vectors,
utils
License: GPL-3
Encoding: UTF-8
LazyData: true
Suggests:
BiocStyle,
devtools,
knitr,
rmarkdown,
roxygen2,
testthat,
GO.db,
org.Dm.eg.db,
org.Dr.eg.db,
org.Hs.eg.db,
org.Mm.eg.db,
org.Rn.eg.db,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
TxDb.Dmelanogaster.UCSC.dm6.ensGene,
TxDb.Drerio.UCSC.danRer10.refGene,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm9.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
TxDb.Rnorvegicus.UCSC.rn4.ensGene,
TxDb.Rnorvegicus.UCSC.rn5.refGene,
TxDb.Rnorvegicus.UCSC.rn6.refGene
VignetteBuilder: knitr
RoxygenNote: 6.1.1
Maintainer: Kai Wang <[email protected]>